mRNA_P-wetherbeei_contig51324.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51324.1.1
Unique NamemRNA_P-wetherbeei_contig51324.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A7V2M789_9PROT (DctP family TRAP transporter solute-binding subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7V2M789_9PROT)

HSP 1 Score: 247 bits (630), Expect = 4.010e-79
Identity = 123/162 (75.93%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF  LGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVG KF T+WGYV DPL FVVNKEVW SWTPADR+ VR AAI+AGKQE+A+AR G+ +  Q   K++E  GVK+TRLTPAERE+FV ATR VY +WK QIG DLV  AEQSIA RK
Sbjct:  180 LFLDTFRALGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGQKFVTMWGYVADPLIFVVNKEVWESWTPADREIVRQAAIDAGKQEIAIARKGLDEPGQPLLKEIEALGVKVTRLTPAEREEFVKATRGVYEQWKKQIGADLVTKAEQSIAARK 341
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: UPI0005A708EC (DctP family TRAP transporter solute-binding subunit n=1 Tax=Comamonas granuli TaxID=290309 RepID=UPI0005A708EC)

HSP 1 Score: 241 bits (615), Expect = 8.150e-77
Identity = 119/162 (73.46%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLH V  K+ TLWGYV DPL FVVNKEVW SWTPADR+AVR AAIEAGK+++A+AR G+ +  Q  +K +E  GV +TRL+P ERE FV ATR VYA+WKAQIG DLVD AE++IA RK
Sbjct:  182 LFVDTFTALGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHNVNQKYLTLWGYVADPLVFVVNKEVWNSWTPADREAVRQAAIEAGKEQIAIARKGLVEPGQPLFKDIEANGVTVTRLSPQEREAFVKATRPVYAKWKAQIGADLVDKAEKAIAARK 343
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A2S0MXS0_9BURK (C4-dicarboxylate ABC transporter n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A2S0MXS0_9BURK)

HSP 1 Score: 236 bits (602), Expect = 7.760e-75
Identity = 113/162 (69.75%), Postives = 136/162 (83.95%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQMSWADAQPA ASGAVDGQENP++IFTAAKLH+V  K+ TLWGY+ DPL FVVNKEVW SWTPADR+ VR AAI+AGK+E+ALAR G+ + D+   KQ+EG GV +T+LTPAER+ FV ATR VY +WK Q+G DLV++AE++IA RK
Sbjct:  183 LFLDTFTALGANPTQMSWADAQPAMASGAVDGQENPLAIFTAAKLHSVAQKYLTLWGYIADPLIFVVNKEVWNSWTPADREIVRQAAIDAGKEEIALARKGVIEADKPLLKQIEGLGVTVTQLTPAERDAFVQATRPVYNKWKGQVGADLVNMAEKAIAARK 344
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A433BDS1_9BURK (DctP family TRAP transporter solute-binding subunit n=3 Tax=Curvibacter TaxID=281915 RepID=A0A433BDS1_9BURK)

HSP 1 Score: 235 bits (599), Expect = 2.480e-74
Identity = 113/162 (69.75%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTFS LGANPTQMSWADAQPA ASGAVDGQENP+SIFTAAKLHTVG K+ T+WGY+CDPL FVVNK++W SWTPADR+ VR AAI+AGK+E ALAR G+ + D+   K++ G GV +T+L+PAERE FV ATR VY +WK+ IG DLV+ AE++IA RK
Sbjct:  188 LFLDTFSALGANPTQMSWADAQPALASGAVDGQENPISIFTAAKLHTVGQKYVTMWGYICDPLVFVVNKDIWNSWTPADREIVRQAAIDAGKEETALARKGLVEADKPLLKEIAGHGVTVTQLSPAEREAFVKATRPVYDKWKSTIGADLVNQAEKAIASRK 349
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A2U1CB77_9BURK (Tripartite ATP-independent transporter DctP family solute receptor n=2 Tax=Simplicispira TaxID=352450 RepID=A0A2U1CB77_9BURK)

HSP 1 Score: 234 bits (597), Expect = 4.420e-74
Identity = 111/162 (68.52%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTFS LGANPTQMSWADAQPA ASGAVDGQENP++IFTAAKLH+V  K+ TLWGY+ DPL FVVNK++W SWTPADR+ VR AAIEAGK+E+A+AR G+ + D+   KQ+EG GV +T+LTP ER  FV ATR VY +WK+Q+G DLV++AE++IA RK
Sbjct:  183 LFLDTFSALGANPTQMSWADAQPAMASGAVDGQENPLAIFTAAKLHSVAQKYLTLWGYIADPLIFVVNKDIWNSWTPADREIVRQAAIEAGKEEIAIARKGVIEADKPLLKQIEGLGVTVTQLTPTERAAFVKATRPVYDKWKSQVGNDLVNMAEKAIAARK 344
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: F3LS86_9BURK (TRAP dicarboxylate transporter subunit DctP n=6 Tax=Rubrivivax TaxID=28067 RepID=F3LS86_9BURK)

HSP 1 Score: 234 bits (596), Expect = 6.260e-74
Identity = 115/162 (70.99%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQMSWADAQPA ASGAVDGQENP+SIFTAAKLHTVG K  TLWGYV DPL FVVNK+VW SWTPAD+  VR AAI+AGKQ++A+AR G+ + DQ   K++   GV +T+LTPAERE FV ATR VY +WK QIG DLVD AE++IA RK
Sbjct:  184 LFLDTFTALGANPTQMSWADAQPALASGAVDGQENPLSIFTAAKLHTVGQKHLTLWGYVADPLIFVVNKDVWKSWTPADQAIVRQAAIDAGKQQIAIARKGVVEADQPLLKEIGALGVTVTKLTPAEREAFVKATRPVYDKWKKQIGSDLVDAAEKAIAARK 345
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A1Q3R1G5_9BURK (C4-dicarboxylate ABC transporter n=1 Tax=Burkholderiales bacterium 68-10 TaxID=1895730 RepID=A0A1Q3R1G5_9BURK)

HSP 1 Score: 233 bits (595), Expect = 9.130e-74
Identity = 114/162 (70.37%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQM+WADAQPAFASGAVDGQENPMSIFTAAKLH VG K  T+WGYV DPL FVVNK++W SWTPADR+AVR AAIEAGK+E+A+AR G+ +  Q   K +   GV I +LTPAERE FV ATR VY +WK QIG DLV++AE++IA RK
Sbjct:  184 LFLDTFTALGANPTQMTWADAQPAFASGAVDGQENPMSIFTAAKLHNVGQKNVTMWGYVADPLVFVVNKDIWNSWTPADREAVRQAAIEAGKEEIAIARKGLAEPGQPLLKDIAALGVNIVQLTPAEREAFVKATRPVYTKWKGQIGADLVNMAEKAIAARK 345
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A2S0MDQ2_9BURK (C4-dicarboxylate ABC transporter n=2 Tax=Ottowia TaxID=219181 RepID=A0A2S0MDQ2_9BURK)

HSP 1 Score: 232 bits (592), Expect = 2.590e-73
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF +TF+ LGANPTQMSWADAQPA ASGAVDGQENPMSIFTAAKLHTVG K+ T+WGY+ DPL FVVNK+VW SWTPADR+ VR AA+EAG ++  +AR G+ +  Q   K++EG GV++TRLTP ERE FV ATR VY +WKAQ+G DLV  AE+SIA RK
Sbjct:  184 LFLETFTALGANPTQMSWADAQPALASGAVDGQENPMSIFTAAKLHTVGQKYLTMWGYIADPLVFVVNKDVWNSWTPADRELVRQAAVEAGVEQNVIARKGLVEPGQPLLKEIEGLGVQVTRLTPTEREAFVKATRPVYDKWKAQVGADLVTAAEKSIAARK 345
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: A0A1G6N1V7_9BURK (Tripartite ATP-independent transporter solute receptor, DctP family n=4 Tax=Variovorax TaxID=34072 RepID=A0A1G6N1V7_9BURK)

HSP 1 Score: 232 bits (591), Expect = 3.460e-73
Identity = 115/162 (70.99%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVG K  T+WGYV DPL FVVNKE+W SWTPAD+  VR AAI+AGKQE+ +AR G+ + DQ   K +   GV +T+L+PAERE FV ATR VYA+WK  IG DLV  AEQ+IA RK
Sbjct:  182 LFVDTFTALGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGQKNVTMWGYVADPLVFVVNKEIWNSWTPADQAIVRQAAIDAGKQEIVIARKGLAEADQPLLKDIAALGVTVTKLSPAEREAFVKATRPVYAKWKPTIGNDLVAKAEQAIASRK 343
[Close]
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Match: I0HPI2_RUBGI (TRAP dicarboxylate transporter-DctP subunit n=4 Tax=Rubrivivax gelatinosus TaxID=28068 RepID=I0HPI2_RUBGI)

HSP 1 Score: 231 bits (588), Expect = 1.010e-72
Identity = 115/162 (70.99%), Postives = 131/162 (80.86%), Query Frame = 1 
Query:    1 LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGHKFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARAGITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDLVDLAEQSIARRK 486
            LF DTF+ LGANPTQMSWADAQPA ASGAVDGQENP+SIFTAAKLHTVG K  TLWGYV DPL FVVNK+VW SWTPAD+  VR AAI+AGK+E A+AR G+ + D    K++ G GV +T+LTPAERE FV ATR VY +WKAQIG DLV  AE++IA RK
Sbjct:  184 LFLDTFTALGANPTQMSWADAQPALASGAVDGQENPLSIFTAAKLHTVGQKHLTLWGYVADPLIFVVNKDVWKSWTPADQAIVRQAAIDAGKEETAIARKGLVEADHPLLKEIGGHGVTVTQLTPAEREAFVKATRPVYDKWKAQIGADLVGAAEKAIAARK 345
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51324.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2M789_9PROT4.010e-7975.93DctP family TRAP transporter solute-binding subuni... [more]
UPI0005A708EC8.150e-7773.46DctP family TRAP transporter solute-binding subuni... [more]
A0A2S0MXS0_9BURK7.760e-7569.75C4-dicarboxylate ABC transporter n=4 Tax=Burkholde... [more]
A0A433BDS1_9BURK2.480e-7469.75DctP family TRAP transporter solute-binding subuni... [more]
A0A2U1CB77_9BURK4.420e-7468.52Tripartite ATP-independent transporter DctP family... [more]
F3LS86_9BURK6.260e-7470.99TRAP dicarboxylate transporter subunit DctP n=6 Ta... [more]
A0A1Q3R1G5_9BURK9.130e-7470.37C4-dicarboxylate ABC transporter n=1 Tax=Burkholde... [more]
A0A2S0MDQ2_9BURK2.590e-7369.14C4-dicarboxylate ABC transporter n=2 Tax=Ottowia T... [more]
A0A1G6N1V7_9BURK3.460e-7370.99Tripartite ATP-independent transporter solute rece... [more]
I0HPI2_RUBGI1.010e-7270.99TRAP dicarboxylate transporter-DctP subunit n=4 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51324contigP-wetherbeei_contig51324:2..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1223521.BBJX01000001_gene884
PFAMsDctP
Model size492
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-77
EggNOG OGsCOG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2VIJ6@28216|Betaproteobacteria,4AA2C@80864|Comamonadaceae
DescriptionTIGRFAM TRAP dicarboxylate transporter, DctP subunit
Cds size492
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.9807365-CDS-P-wetherbeei_contig51324:1..4931683186770.9807365-CDS-P-wetherbeei_contig51324:1..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51324 2..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51324.1.1prot_P-wetherbeei_contig51324.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51324 2..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51324.1.1

>prot_P-wetherbeei_contig51324.1.1 ID=prot_P-wetherbeei_contig51324.1.1|Name=mRNA_P-wetherbeei_contig51324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
LFNDTFSDLGANPTQMSWADAQPAFASGAVDGQENPMSIFTAAKLHTVGH
KFCTLWGYVCDPLAFVVNKEVWASWTPADRDAVRAAAIEAGKQELALARA
GITKEDQSTYKQVEGFGVKITRLTPAEREQFVIATRRVYARWKAQIGKDL
VDLAEQSIARRKV*
back to top

mRNA from alignment at P-wetherbeei_contig51324:2..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51324.1.1 ID=mRNA_P-wetherbeei_contig51324.1.1|Name=mRNA_P-wetherbeei_contig51324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig51324:2..493+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCAACGATACCTTCAGCGACCTCGGTGCCAACCCCACCCAGATGAG
CTGGGCCGATGCCCAGCCGGCGTTTGCATCCGGTGCGGTGGACGGCCAGG
AAAACCCGATGTCGATCTTCACGGCGGCCAAGCTGCACACCGTGGGCCAC
AAGTTCTGCACCCTGTGGGGCTATGTGTGCGATCCGCTGGCATTCGTGGT
CAACAAGGAAGTGTGGGCCAGTTGGACCCCGGCCGACCGCGATGCAGTTC
GTGCGGCGGCTATCGAGGCCGGCAAGCAGGAACTGGCACTGGCACGCGCC
GGCATCACCAAGGAAGACCAGTCGACTTACAAGCAGGTCGAAGGGTTCGG
CGTAAAGATCACCCGCCTGACGCCAGCCGAGCGCGAGCAGTTCGTCATCG
CTACCCGGCGCGTGTATGCGCGCTGGAAAGCGCAGATCGGCAAGGACCTG
GTGGACCTGGCCGAACAGTCCATCGCCAGGCGCAAAGTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51324:2..493+

>mRNA_P-wetherbeei_contig51324.1.1 ID=mRNA_P-wetherbeei_contig51324.1.1|Name=mRNA_P-wetherbeei_contig51324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig51324:2..493+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCAACGATACCTTCAGCGACCTCGGTGCCAACCCCACCCAGATGAG
CTGGGCCGATGCCCAGCCGGCGTTTGCATCCGGTGCGGTGGACGGCCAGG
AAAACCCGATGTCGATCTTCACGGCGGCCAAGCTGCACACCGTGGGCCAC
AAGTTCTGCACCCTGTGGGGCTATGTGTGCGATCCGCTGGCATTCGTGGT
CAACAAGGAAGTGTGGGCCAGTTGGACCCCGGCCGACCGCGATGCAGTTC
GTGCGGCGGCTATCGAGGCCGGCAAGCAGGAACTGGCACTGGCACGCGCC
GGCATCACCAAGGAAGACCAGTCGACTTACAAGCAGGTCGAAGGGTTCGG
CGTAAAGATCACCCGCCTGACGCCAGCCGAGCGCGAGCAGTTCGTCATCG
CTACCCGGCGCGTGTATGCGCGCTGGAAAGCGCAGATCGGCAAGGACCTG
GTGGACCTGGCCGAACAGTCCATCGCCAGGCGCAAAGTCTGA
back to top