mRNA_P-wetherbeei_contig51140.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51140.1.1
Unique NamemRNA_P-wetherbeei_contig51140.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A2E3L674_9PROT (Methionyl-tRNA formyltransferase n=2 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E3L674_9PROT)

HSP 1 Score: 118 bits (295), Expect = 9.460e-31
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHV-STRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            MP EI+LLTG+ E P+L   L+ + P  R++H  + R  LDA   + +  RRLI F T V+VP   + A    AYNFHPGP +YPG +  SFA+++ A  FGATAHEM  +VD+G IV  EWF
Sbjct:   21 MPSEIVLLTGDAEAPHLGSVLRRYNPRLRIVHARNRRELLDACPADGIHTRRLIAFCTPVIVPEEILNAVMPPAYNFHPGPPTYPGSHVASFAIYDDANMFGATAHEMASKVDSGLIVGVEWF 143
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A2E6XAM1_9PROT (Methionyl-tRNA formyltransferase n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6XAM1_9PROT)

HSP 1 Score: 116 bits (291), Expect = 2.710e-30
Identity = 61/125 (48.80%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPR---RRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            M  EIILLTGE E P+L+  L  H     ++HV T   L AA    +P    RRLI F T  +VP R +      AYNFHPGP +YPG +P SFA++E+A ++G T HEM  QVD G IVA +WF
Sbjct:    6 MLAEIILLTGEVEAPHLSSMLHSHNSMINIVHVDTADQLSAACEIALPHGKNRRLIAFCTRAIVPERILNNLNGPAYNFHPGPPTYPGSHPASFAIYEKARKYGVTVHEMTAQVDTGPIVAVKWF 130
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A2S6UKZ3_9PROT (Formyl_trans_N domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin4 TaxID=2013070 RepID=A0A2S6UKZ3_9PROT)

HSP 1 Score: 115 bits (289), Expect = 4.770e-30
Identity = 63/125 (50.40%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPR---RRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            MP EIILLTGE E P+LA  L+ H P+  V     R  ++A  L   P    RRLI + T+V+VP   I      AYNFHPGP +YPG    SFA++E A RFGATAH M  +VDAG IV  +WF
Sbjct:    1 MPEEIILLTGEAEAPHLASVLQNHRPELPVFIAQNRDQVEATCLAPEPAGGSRRLIAYCTSVIVPAAVIDEMSGPAYNFHPGPPTYPGARAASFAIYEGAGRFGATAHVMEERVDAGPIVGVDWF 125
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A2D8YSU4_9PROT (Methionyl-tRNA formyltransferase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D8YSU4_9PROT)

HSP 1 Score: 113 bits (282), Expect = 6.120e-29
Identity = 67/127 (52.76%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAAL-DAAFL----EKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            MP EIILLTGE EGP+LA  L  H P   V HV   A+L DA  L    +    RRL+ F T  VVP   +AA    AYNFHPGP +YPG    SFA++E A RFGAT H M R+VD G+IV   WF
Sbjct:    1 MPHEIILLTGEVEGPHLAAALMAHNPTIHVNHVDGAASLRDALDLTGGADANAGRRLVAFCTGAVVPADVLAALPGPAYNFHPGPPTYPGSRAASFALYEGADRFGATLHVMERRVDEGAIVDVAWF 127
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A2M7GIN4_9PROT (Methionyl-tRNA formyltransferase n=1 Tax=Rhodospirillales bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_66_15 TaxID=1974092 RepID=A0A2M7GIN4_9PROT)

HSP 1 Score: 111 bits (278), Expect = 2.440e-28
Identity = 65/127 (51.18%), Postives = 76/127 (59.84%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHV----STRAALDA-AFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            MP EIILLTG+ EGP+LA  L  H P   V HV    S R ALD        P RRL+ F T VVVP   +AA    AYNFHPGP +YPG +   FA+++ A RFGAT H M  +VD G+IV   WF
Sbjct:    1 MPSEIILLTGDVEGPHLAAALAAHNPALHVNHVDGADSLRDALDLKGGSAANPGRRLVAFCTGVVVPPEVLAALPGPAYNFHPGPPTYPGSWAAGFALYDGARRFGATLHVMEDRVDEGAIVDVAWF 127
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A512DT04_9PROT (Formyl_trans_N domain-containing protein n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DT04_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.800e-27
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            M   +ILLTG RE PYL ++L+ ++    +IH +    L+    E +P R LI F T V+VP   +   +  A+NFHPGP +YPG +PESFA ++  TRFGAT+H M+ +VD G IV  EWF
Sbjct:    1 MSSALILLTGHREAPYLIDYLRGYSTTLPIIHATDLEDLER---ECLPGRVLIAFCTAVIVPVGLLDRLERPAFNFHPGPPTYPGRHPESFAAYDGVTRFGATSHVMVPRVDEGPIVGVEWF 119
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: UPI0013018E82 (methionyl-tRNA formyltransferase n=4 Tax=Skermanella TaxID=204447 RepID=UPI0013018E82)

HSP 1 Score: 109 bits (272), Expect = 2.550e-27
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            M   +ILLTG RE PYL ++L+ ++    + HV+    L+    E +P R LI F T V+VP   +      A+NFHPGP +YPG  PESFAV++ ATRFGAT+H M  +VD G IV  EWF
Sbjct:    1 MASALILLTGHREAPYLIDYLRGYSDTLPIHHVADHGDLER---ECLPGRVLIAFCTAVIVPRHLLDRLGRPAFNFHPGPPTYPGRSPESFAVYDGATRFGATSHVMAPRVDEGPIVGVEWF 119
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: W9GWA8_9PROT (Methionyl-tRNA formyltransferase n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9GWA8_9PROT)

HSP 1 Score: 107 bits (268), Expect = 1.010e-26
Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            M   +ILLTG RE PYL ++L+ ++    + HV+    LD    E +P R LI F T V+VP R +      A+NFHPGP +YPG  PESFA ++  TRFGAT+H M  +VD G IV  EWF
Sbjct:    1 MASALILLTGYREAPYLIDYLRGYSDTLPIHHVTDLEELDR---ECLPGRVLIAFCTAVIVPKRVLDRLGRPAFNFHPGPPTYPGRSPESFATYDGVTRFGATSHIMAPRVDEGPIVGVEWF 119
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: A0A3M1GI21_9PROT (Formyl_trans_N domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1GI21_9PROT)

HSP 1 Score: 104 bits (260), Expect = 1.040e-25
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1 
Query:    1 MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            MP  I++LTG+RE   LA ++   A    V   +TRA L AA  + M   RLI F ++V+VP   +A     AYN HPG   +PG+ PE+FA+   A RFGATAHEM R+VDAG+IVA E F
Sbjct:    1 MPQRILILTGQREAKALARYVTARASALDVAVATTRADLTAAAAD-MRGTRLIAFLSSVIVPAEILARAPMPAYNIHPGSPDFPGLCPEAFALAAGARRFGATAHEMTREVDAGAIVAVEDF 121
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BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Match: UPI001BCB6F9B (methionyl-tRNA formyltransferase n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCB6F9B)

HSP 1 Score: 105 bits (261), Expect = 1.460e-25
Identity = 57/118 (48.31%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:   13 IILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRRRLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRFGATAHEMIRQVDAGSIVASEWF 366
            IILLT   E    A  L  H PD  ++ V T   L+A   + + R RLI + T VVVP   +     GAYNFHPGP ++PG  P  FA++ RAT FGATAH MI +VDAG IV  E F
Sbjct:   15 IILLTSNLERSIFASVLSAHNPDLTILPVETLTDLNALDQDALARARLIAYATGVVVPASVLDRLGYGAYNFHPGPPAFPGWAPAHFALYARATEFGATAHVMIDRVDAGPIVGVEMF 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51140.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3L674_9PROT9.460e-3148.78Methionyl-tRNA formyltransferase n=2 Tax=Magnetovi... [more]
A0A2E6XAM1_9PROT2.710e-3048.80Methionyl-tRNA formyltransferase n=1 Tax=Magnetovi... [more]
A0A2S6UKZ3_9PROT4.770e-3050.40Formyl_trans_N domain-containing protein n=1 Tax=A... [more]
A0A2D8YSU4_9PROT6.120e-2952.76Methionyl-tRNA formyltransferase n=2 Tax=Rhodospir... [more]
A0A2M7GIN4_9PROT2.440e-2851.18Methionyl-tRNA formyltransferase n=1 Tax=Rhodospir... [more]
A0A512DT04_9PROT1.800e-2745.90Formyl_trans_N domain-containing protein n=1 Tax=S... [more]
UPI0013018E822.550e-2747.54methionyl-tRNA formyltransferase n=4 Tax=Skermanel... [more]
W9GWA8_9PROT1.010e-2647.54Methionyl-tRNA formyltransferase n=1 Tax=Skermanel... [more]
A0A3M1GI21_9PROT1.040e-2548.36Formyl_trans_N domain-containing protein n=1 Tax=A... [more]
UPI001BCB6F9B1.460e-2548.31methionyl-tRNA formyltransferase n=1 Tax=Bradyrhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51140contigP-wetherbeei_contig51140:1..366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog113395.AXAI01000006_gene1660
PFAMsFormyl_trans_N
Model size366
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-23
EggNOG OGsCOG0223@1|root,COG0223@2|Bacteria,1R6XR@1224|Proteobacteria,2TTKX@28211|Alphaproteobacteria,3JUUZ@41294|Bradyrhizobiaceae
DescriptionAttaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
Cds size366
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.8215427-CDS-P-wetherbeei_contig51140:0..3661683186768.8215427-CDS-P-wetherbeei_contig51140:0..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51140 1..366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51140.1.1prot_P-wetherbeei_contig51140.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51140 1..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51140.1.1

>prot_P-wetherbeei_contig51140.1.1 ID=prot_P-wetherbeei_contig51140.1.1|Name=mRNA_P-wetherbeei_contig51140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MPGEIILLTGEREGPYLAEHLKIHAPDQRVIHVSTRAALDAAFLEKMPRR
RLIGFTTNVVVPGRHIAACQCGAYNFHPGPSSYPGVYPESFAVWERATRF
GATAHEMIRQVDAGSIVASEWF
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mRNA from alignment at P-wetherbeei_contig51140:1..366-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51140.1.1 ID=mRNA_P-wetherbeei_contig51140.1.1|Name=mRNA_P-wetherbeei_contig51140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig51140:1..366- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGGCGAAATCATCCTGCTGACCGGCGAGCGCGAAGGCCCGTACCT
GGCGGAGCACCTGAAGATCCACGCCCCCGACCAGCGCGTCATCCACGTGT
CGACGCGCGCGGCCCTCGACGCGGCGTTCCTCGAAAAGATGCCGCGCCGC
CGGCTGATCGGCTTCACGACCAACGTCGTCGTGCCCGGCCGCCACATCGC
CGCGTGCCAGTGCGGCGCCTACAATTTTCATCCCGGTCCGTCGAGCTATC
CGGGCGTCTATCCGGAAAGTTTCGCGGTGTGGGAGCGCGCGACGCGCTTC
GGCGCCACCGCGCACGAGATGATCCGGCAGGTCGATGCCGGCAGCATCGT
CGCCAGCGAATGGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51140:1..366-

>mRNA_P-wetherbeei_contig51140.1.1 ID=mRNA_P-wetherbeei_contig51140.1.1|Name=mRNA_P-wetherbeei_contig51140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig51140:1..366- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGGCGAAATCATCCTGCTGACCGGCGAGCGCGAAGGCCCGTACCT
GGCGGAGCACCTGAAGATCCACGCCCCCGACCAGCGCGTCATCCACGTGT
CGACGCGCGCGGCCCTCGACGCGGCGTTCCTCGAAAAGATGCCGCGCCGC
CGGCTGATCGGCTTCACGACCAACGTCGTCGTGCCCGGCCGCCACATCGC
CGCGTGCCAGTGCGGCGCCTACAATTTTCATCCCGGTCCGTCGAGCTATC
CGGGCGTCTATCCGGAAAGTTTCGCGGTGTGGGAGCGCGCGACGCGCTTC
GGCGCCACCGCGCACGAGATGATCCGGCAGGTCGATGCCGGCAGCATCGT
CGCCAGCGAATGGTTC
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