mRNA_P-wetherbeei_contig5112.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5112.2.1
Unique NamemRNA_P-wetherbeei_contig5112.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5112.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5112contigP-wetherbeei_contig5112:2378..3472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.5104382-UTR-P-wetherbeei_contig5112:2377..27741683186768.5104382-UTR-P-wetherbeei_contig5112:2377..2774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5112 2378..2774 +
1683186768.5307543-UTR-P-wetherbeei_contig5112:3353..34721683186768.5307543-UTR-P-wetherbeei_contig5112:3353..3472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5112 3354..3472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.5209332-CDS-P-wetherbeei_contig5112:2774..33531683186768.5209332-CDS-P-wetherbeei_contig5112:2774..3353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5112 2775..3353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5112.2.1prot_P-wetherbeei_contig5112.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5112 2775..3353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5112.2.1

>prot_P-wetherbeei_contig5112.2.1 ID=prot_P-wetherbeei_contig5112.2.1|Name=mRNA_P-wetherbeei_contig5112.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MAAPAPRVSAAAAARPPSAVGGGGSGGDELATAASTTAAMTAAAAAAAAA
TAMTTTVAQFERVQRRPPGSAPTAASPTRPSPRRSVYAPREGGTGRSGET
ASPGELSATAAAASTSSWRAAQRETRAPSDGSRGTLVEIGGGVGGGGGGG
GGGEGGGDGGGGGRGFSDRSTVDKAAQAAAVRPRRSRGSIQL*
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mRNA from alignment at P-wetherbeei_contig5112:2378..3472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5112.2.1 ID=mRNA_P-wetherbeei_contig5112.2.1|Name=mRNA_P-wetherbeei_contig5112.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig5112:2378..3472+ (Phaeothamnion wetherbeei SAG_119_79)
TAGGGCCGGCCGCAGCGAAAGTGGAGGCGGCGGTGGCAGCGGCGGAGGCG
GCAATGGCGCTGGAGCCAACGGCACCGGAGCCAACGGCACCGGAGCCAAC
GGCGGAGGCAGCAGCAGCAGCAGTGGCGGCGGTCGGGGAGACCGCGGTTT
GGCAAGCCGGGGCAAAGAGCGCGCCGTCGGTGCATTTGGCGGCGGCGCCG
GCGGCGGCAGCGGCGGCGGGAGCGGTGAAAGCGGCGTGTCTCCATACGTG
GAGGACTATCGGGTGGTGCCGGACGAATTCCACGAGTTTAGCTTTGTCAA
CATAAACACCGTCCGAAACCTGAAAGACCGGAGTATCGCCAGCCCCTCTG
GCGTTCCAGTGTACGGATCTTCCTCGGCGGCGGCGGCGACCGCAGCGATG
GCGGCGCCTGCTCCAAGGGTGTCGGCGGCGGCAGCCGCCAGGCCGCCGTC
GGCGGTTGGCGGCGGTGGCAGCGGCGGCGACGAGCTCGCGACGGCGGCTT
CGACAACAGCCGCGATGACGGCGGCAGCTGCGGCGGCGGCTGCAGCGACA
GCGATGACAACGACGGTGGCGCAATTCGAACGAGTGCAGCGCCGGCCACC
GGGTTCGGCGCCGACCGCAGCGTCGCCGACGAGGCCGTCGCCACGGCGGT
CCGTTTATGCGCCGCGGGAAGGCGGCACGGGGCGCTCCGGCGAGACGGCG
TCCCCCGGAGAGCTGAGTGCCACAGCGGCTGCGGCGTCAACGTCGTCGTG
GCGTGCCGCCCAGCGTGAGACGCGCGCTCCTTCGGACGGCTCGCGGGGCA
CCCTGGTGGAAATCGGCGGCGGTGTCGGCGGCGGTGGCGGCGGCGGCGGC
GGCGGCGAAGGAGGAGGTGACGGCGGCGGTGGCGGCAGGGGGTTCTCGGA
CAGATCAACAGTCGACAAGGCTGCGCAGGCAGCGGCCGTTCGGCCTCGGC
GGTCAAGGGGCAGCATTCAGCTATAAATAGACCAGACAGACTATTAGAAG
CACCCAGCAGGCTAACGATTGACCTCTATGTGACCTCTAAGAACTACCTT
GCCGAAATCAGCTCTTGATTTTTTCCTTGCGAGGCCACACAAACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5112:2378..3472+

>mRNA_P-wetherbeei_contig5112.2.1 ID=mRNA_P-wetherbeei_contig5112.2.1|Name=mRNA_P-wetherbeei_contig5112.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig5112:2378..3472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGCCTGCTCCAAGGGTGTCGGCGGCGGCAGCCGCCAGGCCGCC
GTCGGCGGTTGGCGGCGGTGGCAGCGGCGGCGACGAGCTCGCGACGGCGG
CTTCGACAACAGCCGCGATGACGGCGGCAGCTGCGGCGGCGGCTGCAGCG
ACAGCGATGACAACGACGGTGGCGCAATTCGAACGAGTGCAGCGCCGGCC
ACCGGGTTCGGCGCCGACCGCAGCGTCGCCGACGAGGCCGTCGCCACGGC
GGTCCGTTTATGCGCCGCGGGAAGGCGGCACGGGGCGCTCCGGCGAGACG
GCGTCCCCCGGAGAGCTGAGTGCCACAGCGGCTGCGGCGTCAACGTCGTC
GTGGCGTGCCGCCCAGCGTGAGACGCGCGCTCCTTCGGACGGCTCGCGGG
GCACCCTGGTGGAAATCGGCGGCGGTGTCGGCGGCGGTGGCGGCGGCGGC
GGCGGCGGCGAAGGAGGAGGTGACGGCGGCGGTGGCGGCAGGGGGTTCTC
GGACAGATCAACAGTCGACAAGGCTGCGCAGGCAGCGGCCGTTCGGCCTC
GGCGGTCAAGGGGCAGCATTCAGCTATAA
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