mRNA_P-wetherbeei_contig51083.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51083.2.1
Unique NamemRNA_P-wetherbeei_contig51083.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A521M797_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M797_9HYPH)

HSP 1 Score: 75.1 bits (183), Expect = 5.970e-15
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   16 YPLLILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            + L++LLA  A+ PAF Q+ GG+SS+A+SRCAG++G D RQ+D AFG +ALDGMPW
Sbjct:    5 FSLMLLLAAVAA-PAFGQDVGGLSSTALSRCAGRVGLDMRQSDAAFGVIALDGMPW 59
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A512N7I9_9HYPH (Uncharacterized protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512N7I9_9HYPH)

HSP 1 Score: 73.2 bits (178), Expect = 3.080e-14
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   28 ILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            +LLA   + PA A++ GGISS AISRCAGK+G DTRQ+D AFG +ALDG+PW
Sbjct:    9 VLLAFGLAAPALARDEGGISSLAISRCAGKVGIDTRQSDAAFGLIALDGIPW 60
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A512NHA3_9HYPH (Uncharacterized protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NHA3_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 3.160e-13
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 MKVLYPLLILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            M +L  ++ LL   AS  A AQEAGGISSSAISRCAGKIG DTR+AD AF  + LDG PW
Sbjct:    1 MYLLNLVVTLLVAIASTTALAQEAGGISSSAISRCAGKIGLDTREADAAFSAILLDG-PW 59
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A1F3AE04_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3AE04_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 9.460e-13
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   25 LILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            L+L A   + PA AQ+A G+SS AISRCAG++G DTRQ+D AFG +ALDG PW
Sbjct:   17 LVLPACIVAAPAPAQDARGLSSPAISRCAGRVGLDTRQSDAAFGIIALDGRPW 69
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A6N6ZEZ4_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N6ZEZ4_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 9.350e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    4 MKVLYPLL-ILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            M +++ LL +LLA   + PA A   GGIS+  +SRCAGK G +TRQAD AFG +ALDG+PW
Sbjct:    1 MTIIHRLLPVLLATAIASPALAGPDGGISTPMLSRCAGKAGLETRQADAAFGLLALDGVPW 61
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BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Match: A0A512NEB4_9HYPH (Uncharacterized protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NEB4_9HYPH)

HSP 1 Score: 61.6 bits (148), Expect = 6.840e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   16 YPLLILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAFGFVALDGMPW 183
            + L +L A   + PA AQ+     SS ISRCAGK+G D RQ+DPAFG + +DG PW
Sbjct:    3 HTLPVLTAIVLATPALAQDPADRDSSTISRCAGKVGRDMRQSDPAFGIIMIDGRPW 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A521M797_9HYPH5.970e-1560.71Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A512N7I9_9HYPH3.080e-1465.38Uncharacterized protein n=1 Tax=Reyranella soli Ta... [more]
A0A512NHA3_9HYPH3.160e-1365.00Uncharacterized protein n=1 Tax=Reyranella soli Ta... [more]
A0A1F3AE04_9PROT9.460e-1362.26Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6N6ZEZ4_9PROT9.350e-1255.74Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A512NEB4_9HYPH6.840e-1051.79Uncharacterized protein n=1 Tax=Reyranella soli Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51083contigP-wetherbeei_contig51083:374..556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size183
Hectar predicted targeting categorysignal peptide
Exons1
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186767.9911628-UTR-P-wetherbeei_contig51083:373..3761683186767.9911628-UTR-P-wetherbeei_contig51083:373..376Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51083 374..376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.0013804-CDS-P-wetherbeei_contig51083:376..5561683186768.0013804-CDS-P-wetherbeei_contig51083:376..556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51083 377..556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51083.2.1prot_P-wetherbeei_contig51083.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51083 377..556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51083.2.1

>prot_P-wetherbeei_contig51083.2.1 ID=prot_P-wetherbeei_contig51083.2.1|Name=mRNA_P-wetherbeei_contig51083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MKVLYPLLILLAGTASVPAFAQEAGGISSSAISRCAGKIGFDTRQADPAF
GFVALDGMPW
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mRNA from alignment at P-wetherbeei_contig51083:374..556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51083.2.1 ID=mRNA_P-wetherbeei_contig51083.2.1|Name=mRNA_P-wetherbeei_contig51083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig51083:374..556+ (Phaeothamnion wetherbeei SAG_119_79)
CCTATGAAGGTCTTGTACCCGCTTTTGATCCTGCTTGCCGGCACGGCGAG
CGTGCCCGCTTTCGCCCAGGAGGCTGGCGGCATCTCGTCATCGGCGATTT
CCCGCTGCGCGGGCAAGATCGGCTTCGACACGCGCCAGGCCGATCCGGCT
TTCGGTTTCGTGGCACTCGATGGCATGCCGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51083:374..556+

>mRNA_P-wetherbeei_contig51083.2.1 ID=mRNA_P-wetherbeei_contig51083.2.1|Name=mRNA_P-wetherbeei_contig51083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig51083:374..556+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCTTGTACCCGCTTTTGATCCTGCTTGCCGGCACGGCGAGCGT
GCCCGCTTTCGCCCAGGAGGCTGGCGGCATCTCGTCATCGGCGATTTCCC
GCTGCGCGGGCAAGATCGGCTTCGACACGCGCCAGGCCGATCCGGCTTTC
GGTTTCGTGGCACTCGATGGCATGCCGTGG
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