mRNA_P-wetherbeei_contig51.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51.8.1
Unique NamemRNA_P-wetherbeei_contig51.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51.8.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-10
Identity = 46/117 (39.32%), Postives = 57/117 (48.72%), Query Frame = 1 
Query:  160 QLAMHTSLLEAASIFYVQLWADSGKDDGGKALAE------------------WRQAHAEALAALPA-AGRCDPHQWTFEERKMLCAGLLAQGAPGGGVEDAIDVGAWHLMEGRAPED 453
            +L + T   E+A+I  VQ WA++G +     L+E                  WR A A AL  LP       P  WTF ERKMLCA LLAQGAP    +D +  G   LM+GR P D
Sbjct: 2146 RLGVVTDRQESAAIGLVQAWAETGSE---APLSEEPSRSPSPSPPSVPDHQAWRAALASALEVLPKQTAESTPATWTFWERKMLCAALLAQGAPSSNNDDTVHPGVIRLMQGREPFD 2259
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BLAST of mRNA_P-wetherbeei_contig51.8.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-10
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:  160 QLAMHTSLLEAASIFYVQLWADSGKD-----DGGKALAE----------WRQAHAEALAALPA-AGRCDPHQWTFEERKMLCAGLLAQGAPGGGVEDAIDVGAWHLMEGRAPED 453
            +L + T   E+A+I  VQ WA++G +     +  ++ +           WR A A AL  LP       P  WTF ERKMLCA LLAQGAP    +D +  G   LM+GR P D
Sbjct: 2191 RLGVVTDRQESAAIGLVQAWAETGSEAPPSEESSRSPSPSPPSVPDHQAWRAALASALKVLPKQTAESTPATWTFWERKMLCAALLAQGAPSSNNDDTVHPGVIRLMQGREPFD 2304
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDU9_ECTSI1.840e-1039.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE1.840e-1038.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51contigP-wetherbeei_contig51:14126..14602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDU9
PFAMsChromo,FYRC,FYRN,Helicase_C,SNF2_N
Model size477
Max annot lvl2759|Eukaryota
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.02e-11
EggNOG OGsCOG0553@1|root,KOG0384@2759|Eukaryota
EC3.6.4.12
Descriptionhelicase activity
Cds size477
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.7000377-CDS-P-wetherbeei_contig51:14125..146021683186766.7000377-CDS-P-wetherbeei_contig51:14125..14602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51 14126..14602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51.8.1prot_P-wetherbeei_contig51.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51 14126..14602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51.8.1

>prot_P-wetherbeei_contig51.8.1 ID=prot_P-wetherbeei_contig51.8.1|Name=mRNA_P-wetherbeei_contig51.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
LPADSYLLRAVKAFNGFGLVPGMDLGKAAAGLYPIGTHVNASAAAAANGA
VDPQLAMHTSLLEAASIFYVQLWADSGKDDGGKALAEWRQAHAEALAALP
AAGRCDPHQWTFEERKMLCAGLLAQGAPGGGVEDAIDVGAWHLMEGRAPE
DGATLGPPK
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mRNA from alignment at P-wetherbeei_contig51:14126..14602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51.8.1 ID=mRNA_P-wetherbeei_contig51.8.1|Name=mRNA_P-wetherbeei_contig51.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51:14126..14602- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGCCGACAGCTACCTGTTGCGGGCGGTCAAGGCATTCAATGGGTT
TGGGCTCGTGCCCGGGATGGATCTGGGCAAGGCGGCGGCCGGCTTGTACC
CCATCGGGACGCACGTGAACGCCTCCGCCGCCGCGGCCGCCAATGGCGCC
GTCGACCCGCAGTTGGCGATGCATACGTCGCTGCTCGAGGCAGCGTCCAT
CTTCTACGTGCAACTGTGGGCGGACAGCGGCAAGGACGACGGCGGCAAGG
CGCTCGCCGAGTGGCGGCAGGCGCACGCCGAGGCGCTGGCGGCGCTGCCG
GCGGCCGGCCGCTGCGACCCGCACCAATGGACGTTTGAGGAGCGCAAGAT
GCTCTGTGCGGGGCTGCTGGCGCAGGGCGCGCCCGGCGGCGGCGTAGAGG
ACGCTATCGACGTCGGCGCATGGCACCTGATGGAAGGGCGGGCACCGGAG
GACGGCGCGACGCTGGGCCCGCCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51:14126..14602-

>mRNA_P-wetherbeei_contig51.8.1 ID=mRNA_P-wetherbeei_contig51.8.1|Name=mRNA_P-wetherbeei_contig51.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51:14126..14602- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGCCGACAGCTACCTGTTGCGGGCGGTCAAGGCATTCAATGGGTT
TGGGCTCGTGCCCGGGATGGATCTGGGCAAGGCGGCGGCCGGCTTGTACC
CCATCGGGACGCACGTGAACGCCTCCGCCGCCGCGGCCGCCAATGGCGCC
GTCGACCCGCAGTTGGCGATGCATACGTCGCTGCTCGAGGCAGCGTCCAT
CTTCTACGTGCAACTGTGGGCGGACAGCGGCAAGGACGACGGCGGCAAGG
CGCTCGCCGAGTGGCGGCAGGCGCACGCCGAGGCGCTGGCGGCGCTGCCG
GCGGCCGGCCGCTGCGACCCGCACCAATGGACGTTTGAGGAGCGCAAGAT
GCTCTGTGCGGGGCTGCTGGCGCAGGGCGCGCCCGGCGGCGGCGTAGAGG
ACGCTATCGACGTCGGCGCATGGCACCTGATGGAAGGGCGGGCACCGGAG
GACGGCGCGACGCTGGGCCCGCCCAAG
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