mRNA_P-wetherbeei_contig21585.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21585.1.1
Unique NamemRNA_P-wetherbeei_contig21585.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21585.1.1 vs. uniprot
Match: A0A8A1V4G3_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism TaxID=155900 RepID=A0A8A1V4G3_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 7.640e-28
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 FDRHILNSLIFSNSSNGFISNQKSWALGYGHKHYVYNRSSVAGMGEFRYIAYGIEILHINHEAKTITKELSLL 219
            F R+ LNSLIFSNSS GFI  QKSWALGY  KHYVYNRS+  GMGEFR+ AYGIEILHINHEAK+IT+ELSLL
Sbjct:  315 FTRYNLNSLIFSNSSTGFIPQQKSWALGYALKHYVYNRSAFPGMGEFRFFAYGIEILHINHEAKSITRELSLL 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21585.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8A1V4G3_9ZZZZ7.640e-2879.45Uncharacterized protein n=1 Tax=uncultured organis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21585contigP-wetherbeei_contig21585:267..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size413
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186229.5884378-UTR-P-wetherbeei_contig21585:266..3951683186229.5884378-UTR-P-wetherbeei_contig21585:266..395Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21585 267..395 +
1683186229.6162302-UTR-P-wetherbeei_contig21585:557..6791683186229.6162302-UTR-P-wetherbeei_contig21585:557..679Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21585 558..679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186229.603445-CDS-P-wetherbeei_contig21585:395..5571683186229.603445-CDS-P-wetherbeei_contig21585:395..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21585 396..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21585.1.1prot_P-wetherbeei_contig21585.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21585 396..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21585.1.1

>prot_P-wetherbeei_contig21585.1.1 ID=prot_P-wetherbeei_contig21585.1.1|Name=mRNA_P-wetherbeei_contig21585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
MGEFRYIAYGIEILHINHEAKTITKELSLLSVRKFRSVRGCILSLLPSIS
LLL*
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mRNA from alignment at P-wetherbeei_contig21585:267..679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21585.1.1 ID=mRNA_P-wetherbeei_contig21585.1.1|Name=mRNA_P-wetherbeei_contig21585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=413bp|location=Sequence derived from alignment at P-wetherbeei_contig21585:267..679+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGACCGGCATATTTTAAACTCTTTGATTTTTTCAAATAGCTCAAATGG
ATTTATCTCTAATCAGAAAAGTTGGGCGTTGGGATATGGTCACAAGCATT
ACGTTTATAACCGTTCTTCAGTAGCAGGCATGGGTGAGTTCAGGTACATT
GCCTACGGAATTGAAATCCTTCATATAAATCATGAAGCTAAAACTATCAC
CAAAGAACTAAGTTTGTTAAGCGTCCGAAAGTTCAGATCGGTACGCGGTT
GCATCCTAAGCTTACTTCCATCTATCTCTTTGCTGCTGTAACGTATAATT
TTTATTGGTCTAAATCGACCGAGGGAATTAGTCCTTCTTTCCTGGAGTCA
AGAAGCGTGGTTAGCGGAAAAATGCTTGAGCAATGGCCGGGCTTTTCAGC
AGGCGTACATATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21585:267..679+

>mRNA_P-wetherbeei_contig21585.1.1 ID=mRNA_P-wetherbeei_contig21585.1.1|Name=mRNA_P-wetherbeei_contig21585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig21585:267..679+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGAGTTCAGGTACATTGCCTACGGAATTGAAATCCTTCATATAAA
TCATGAAGCTAAAACTATCACCAAAGAACTAAGTTTGTTAAGCGTCCGAA
AGTTCAGATCGGTACGCGGTTGCATCCTAAGCTTACTTCCATCTATCTCT
TTGCTGCTGTAA
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