mRNA_P-wetherbeei_contig21579.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21579.1.1
Unique NamemRNA_P-wetherbeei_contig21579.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.390e-41
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 RSGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            +S LRSME+ HKPLL+LR KVV+VGDA VGK+AL QMFH GG  YPKNY+MT GV FCV+QVNI   N       AVEL+LFD AGQSIFN+ +Q+ + WE+ S+  VV+DV +R SF+
Sbjct:   26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTN------CAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQ 138
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.160e-41
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            SG+RSM+TTH+  L+LR KVV+VGDA VGKT++ QMF SGG +YPKNYIMTIGV+F V+QV +   +        VELFLFD  GQ +FNKL+Q A Y+E+A+F CVVFDVS+R SFE
Sbjct:   18 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD------CVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFE 129
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 4.070e-41
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            SG+RSM+TTH+  L+LR KVV+VGDA VGKT++ QMF SGG +YPKNYIMTIGV+F V+QV +   +        VELFLFD  GQ +FNKL+Q A Y+E+A+F CVVFDVS+R SFE
Sbjct:   18 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD------CVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFE 129
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.710e-39
Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:   19 METTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            ME  HKPLL+LR+KVVIVGDAYVGKTA+TQM  S G NYPKNY+MT  V+F V+Q+ +   N        VELFLFD AGQ +FNKLD +A +W++ASF CVVFDV +R SF+
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVN------CCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQ 107
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.170e-37
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSS 351
            SGLRSMET+HK +++LR K+++VGDA VGKTALTQ F SGG  YPKNY+MTIG EF V+QV I   N        VELF++D AGQSIFN+LD +++Y+E+AS   VV++V++R S
Sbjct:    3 SGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETN------VIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDS 112
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.490e-34
Identity = 64/118 (54.24%), Postives = 90/118 (76.27%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            S +RSME+ H+ +L+LR KVV+VGDA VGK+AL  MFHSGG ++PK Y+MT  V+F V+QV+I        ++ AVEL+LFD  GQSIFN+++ +  ++E+ASF C+V+DVS+ SSFE
Sbjct:   13 SAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPE------SSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFE 124
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: K3WSL6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSL6_GLOUD)

HSP 1 Score: 122 bits (306), Expect = 1.710e-33
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSF 354
            S LR+METTHK   VLR KV +VGDA VGKTAL Q+  S G  YPKNY+MT GVE CV+ + I   N        VEL+LFD AGQSIFN+L+    +++ AS A VVFDV+S+ S+
Sbjct:    2 SALRNMETTHKSTTVLRCKVAVVGDATVGKTALLQVLKSSGHEYPKNYVMTSGVELCVKSIPIPETN------VVVELYLFDCAGQSIFNQLEFGTSHYKGASIAVVVFDVNSKESY 112
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: F0YAJ5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAJ5_AURAN)

HSP 1 Score: 119 bits (297), Expect = 1.030e-31
Identity = 64/113 (56.64%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:   19 METTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            METTH+ +L+LR KVV+VGDA VGK+AL  MFHSGG  YPK Y+MT  V+F V+QVNI  P+     + AVEL+LFD AGQSIFN+++ +  ++++ASF  +V+DV+S++SFE
Sbjct:    1 METTHRTILMLRCKVVVVGDATVGKSALISMFHSGGA-YPKQYVMTSWVDFRVKQVNI--PD----TSTAVELYLFDCAGQSIFNQIEANNVHYDNASFLLLVYDVTSQASFE 106
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.140e-31
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSF 354
            S LRSMETTH+ +L+LR KVV+VGDA VGK+AL  MFHSGG +YPK Y+MT  V+F V+QV+I  P+     + AVEL+LFD AG  +FN+++++A  ++ A F  VV+DV+   SF
Sbjct:   27 SCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDI--PD----TSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSF 137
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BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Match: D0P2B3_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0P2B3_PHYIT)

HSP 1 Score: 116 bits (291), Expect = 4.200e-31
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:    4 SGLRSMETTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVEFCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFACVVFDVSSRSSFE 357
            S LRSMETTHK   VLR KV IVGDA VGKTAL Q+  S G  YPKNY+MT  VE   + + I   N        VEL+LFD AGQSIFN+LD    +++ AS A VVFDV+++ SF+
Sbjct:    2 SALRSMETTHKSATVLRCKVAIVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSAKSIAIPDTN------VVVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFK 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21579.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XVJ0_9STRA2.390e-4161.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KZL0_9PHAE3.160e-4161.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ1_ECTSI4.070e-4161.86IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A835ZCC9_9STRA2.710e-3961.95IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S3M1Q0_9STRA8.170e-3758.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3JRK5_9STRA4.490e-3454.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K3WSL6_GLOUD1.710e-3355.56Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0YAJ5_AURAN1.030e-3156.64Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SZ95_9STRA1.140e-3153.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D0P2B3_PHYIT4.200e-3155.08Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21579contigP-wetherbeei_contig21579:1..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJQ1
Preferred nameIFT27
PFAMsRas
Model size357
Max annot lvl2759|Eukaryota
KEGG koko:K07934
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
Exons2
Evalue3.89e-39
EggNOG OGsKOG0079@1|root,KOG0079@2759|Eukaryota
DescriptionGTPase activity
Cds size339
COG categoryS
BRITEko00000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186229.4858181-CDS-P-wetherbeei_contig21579:0..2041683186229.4858181-CDS-P-wetherbeei_contig21579:0..204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21579 1..204 -
1683186229.4963446-CDS-P-wetherbeei_contig21579:440..5751683186229.4963446-CDS-P-wetherbeei_contig21579:440..575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21579 441..575 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186229.5048747-UTR-P-wetherbeei_contig21579:575..5931683186229.5048747-UTR-P-wetherbeei_contig21579:575..593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21579 576..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21579.1.1prot_P-wetherbeei_contig21579.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21579 1..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21579.1.1

>prot_P-wetherbeei_contig21579.1.1 ID=prot_P-wetherbeei_contig21579.1.1|Name=mRNA_P-wetherbeei_contig21579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
METTHKPLLVLRTKVVIVGDAYVGKTALTQMFHSGGVNYPKNYIMTIGVE
FCVRQVNITAPNDPAAAAAAVELFLFDTAGQSIFNKLDQSARYWESASFA
CVVFDVSSRSSFE
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mRNA from alignment at P-wetherbeei_contig21579:1..593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21579.1.1 ID=mRNA_P-wetherbeei_contig21579.1.1|Name=mRNA_P-wetherbeei_contig21579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=593bp|location=Sequence derived from alignment at P-wetherbeei_contig21579:1..593- (Phaeothamnion wetherbeei SAG_119_79)
CGATCTGGACTAAGGTCGATGGAGACGACGCACAAGCCGCTGTTAGTTTT
ACGAACAAAAGTGGTGATCGTCGGAGACGCATACGTTGGCAAGACTGCGC
TTACGCAAATGTTTCACAGCGGGGGCGTCAACTACCCAAAAAACTATATA
ATGGTAAGGTGGTGCAAGTGTTTTGCCAAGAATTCCTCGCCTCCTCCTAT
ATTCTTGACGCACGTAATCGTGTTCTTCTCATTTCCGTGGCACCTCTTTC
GTTTTATGAGTTCCAAAGTCTTTCAAACACTGTTATCTTCCCATCCTCCT
TCCCTCGCGTTGCAGCTAACATGACCCCTCTTCCTCTTCTTCCTCCTCCC
TCTTCTCCTTTCCCTGATCCGTCGTTCGCGGCAAGACAGACGATCGGGGT
AGAGTTCTGCGTGCGGCAGGTCAACATCACCGCCCCCAACGACCCAGCGG
CGGCGGCGGCGGCCGTCGAGCTCTTCCTCTTCGACACGGCGGGGCAGAGC
ATCTTTAACAAGCTCGACCAGAGCGCGCGCTACTGGGAGAGCGCATCGTT
CGCCTGCGTCGTCTTCGATGTCTCGAGCCGTTCCTCCTTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21579:1..593-

>mRNA_P-wetherbeei_contig21579.1.1 ID=mRNA_P-wetherbeei_contig21579.1.1|Name=mRNA_P-wetherbeei_contig21579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig21579:1..593- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGACGACGCACAAGCCGCTGTTAGTTTTACGAACAAAAGTGGTGAT
CGTCGGAGACGCATACGTTGGCAAGACTGCGCTTACGCAAATGTTTCACA
GCGGGGGCGTCAACTACCCAAAAAACTATATAATGACGATCGGGGTAGAG
TTCTGCGTGCGGCAGGTCAACATCACCGCCCCCAACGACCCAGCGGCGGC
GGCGGCGGCCGTCGAGCTCTTCCTCTTCGACACGGCGGGGCAGAGCATCT
TTAACAAGCTCGACCAGAGCGCGCGCTACTGGGAGAGCGCATCGTTCGCC
TGCGTCGTCTTCGATGTCTCGAGCCGTTCCTCCTTCGAG
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