mRNA_P-wetherbeei_contig21563.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21563.1.1
Unique NamemRNA_P-wetherbeei_contig21563.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21563.1.1 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.970e-16
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RREVPSG-ANRYWEAIAARVPGQSAEACKRMAESRLFEKAAGTQQGFFGGYVDVVE 165
            R+EVPSG  + YWE IAARVPGQ+A ACKR+AES LFE A GT+  +FGGY++ +E
Sbjct:  130 RKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIE 185
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BLAST of mRNA_P-wetherbeei_contig21563.1.1 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.060e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 RREVPSGANRYWEAIAARVPGQSAEACKRMAESRLFEKAAGTQQGFFGGYVDVVEVR 171
            RREVPS A  YW+ IA++VPGQ+AE CK M    L +KA GT + FFGGYV+V E +
Sbjct:  141 RREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETK 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK3_ECTSI7.970e-1664.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIQ4_9STRA1.060e-1357.89Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21563contigP-wetherbeei_contig21563:691..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSK3
Model size171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.31e-16
EggNOG OGs2D5NM@1|root,2SZ3Q@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001950.1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186229.1393578-CDS-P-wetherbeei_contig21563:690..8321683186229.1393578-CDS-P-wetherbeei_contig21563:690..832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21563 691..832 -
1683186229.1493864-CDS-P-wetherbeei_contig21563:1131..11601683186229.1493864-CDS-P-wetherbeei_contig21563:1131..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21563 1132..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21563.1.1prot_P-wetherbeei_contig21563.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21563 691..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21563.1.1

>prot_P-wetherbeei_contig21563.1.1 ID=prot_P-wetherbeei_contig21563.1.1|Name=mRNA_P-wetherbeei_contig21563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
RREVPSGANRYWEAIAARVPGQSAEACKRMAESRLFEKAAGTQQGFFGGY
VDVVEVR
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mRNA from alignment at P-wetherbeei_contig21563:691..1160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21563.1.1 ID=mRNA_P-wetherbeei_contig21563.1.1|Name=mRNA_P-wetherbeei_contig21563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=470bp|location=Sequence derived from alignment at P-wetherbeei_contig21563:691..1160- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGGAGGTGCCATCCGGAGCCAACAGGTGAGCAGGTCCACTTTTCTT
TCTCCCGTAACCAGCCTGCGTGGAGGCAATGCCGCATCTTTTTGCATTTC
TCTCTTCGCCGTGTGCACATTACTGTCAGTAGGGAGTGACGATATAATAC
TCGTCTCTTCGAGGTCGAGTGAGCACATGTTCCCCCCTGATGCTATTCAA
GAAGTATGCATTGGCAAAAGCGTAAAACATTTTCGATGTCATCCACGCGC
TATCGATCTCTCCTGTCAAATATTGGGCAAGCGCTATAAAGACTCAACAT
GCGCGTTGCCATCCTTCTCTCCTCTCAGATACTGGGAGGCCATCGCCGCG
CGCGTGCCGGGCCAGTCCGCAGAGGCGTGCAAGCGGATGGCCGAAAGTCG
ACTGTTCGAGAAGGCGGCGGGCACCCAGCAGGGCTTCTTCGGCGGCTACG
TCGATGTTGTCGAGGTAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21563:691..1160-

>mRNA_P-wetherbeei_contig21563.1.1 ID=mRNA_P-wetherbeei_contig21563.1.1|Name=mRNA_P-wetherbeei_contig21563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig21563:691..1160- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGGAGGTGCCATCCGGAGCCAACAGATACTGGGAGGCCATCGCCGC
GCGCGTGCCGGGCCAGTCCGCAGAGGCGTGCAAGCGGATGGCCGAAAGTC
GACTGTTCGAGAAGGCGGCGGGCACCCAGCAGGGCTTCTTCGGCGGCTAC
GTCGATGTTGTCGAGGTAAGG
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