mRNA_P-wetherbeei_contig21551.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig21551.1.1
Unique Name	mRNA_P-wetherbeei_contig21551.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot
Match: A0A024GC57_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GC57_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.180e-12
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 1

Query:  607 DPIFEELRAGRGEGGRLDRWVQRHLGASVLARVA------ARRAAAAALLQHSGCLPLCRGELAAAAAAGDAAEAEEVRPGERTLQIWRAARQVTESAMRSKQTSGASFAVIADLLHAKADFLLGVRPCAAAIAVS 996
            DP  ++     G    +DRWV RH+G S + R+       ARR   AA++ HSG LP+ +    A A   D  ++E  RP E  + IWRAA++VTE  +RSK   G+++A +A+ +  KA FLL ++P   A+A +
Sbjct: 1501 DPFLQQFITANGIAANIDRWVSRHVGESPITRIGGESFKVARRTVCAAMIWHSGFLPIVK--RVAEARCTDFIDSE-TRPQENLMHIWRAAQRVTEWGIRSKNALGSTYAAVAERIIRKAQFLLEIQPSDRALAAA 1633

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BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot
Match: F0WEA1_9STRA (HECT E3 ubiquitin ligase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEA1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.810e-12
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = 1

Query:  592 VTRGLDPIFEELRAGRGEGGRLDRWVQRHLGASVLARVA------ARRAAAAALLQHSGCLPLCRGELAAAAAAGDAAEAEEVRPGERTLQIWRAARQVTESAMRSKQTSGASFAVIADLLHAKADFLLGVRP 972
            +  G D   ++L    G    +DRW+ RH+G S + R+       ARR   AA++ HSG LP+ +    A A   D  ++E  RP E  + IWRAA++VTE  +RSK   G+++AV+A+ +  KA FLL ++P
Sbjct: 1489 MQNGKDVFLQDLITANGIAYSIDRWISRHVGESPMTRIGGESFKIARRTICAAMIWHSGFLPIVK--RIAEARRSDFIDSE-TRPQENLMHIWRAAQRVTEWGIRSKNALGSTYAVVAERIIRKAQFLLEIQP 1618

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BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot
Match: A0A0W8DND8_PHYNI (NFX1-type zinc finger-containing protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DND8_PHYNI)

HSP 1 Score: 76.6 bits (187), Expect = 1.570e-11
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 1

Query:  595 TRGLDPIFEELRAGRGEGGRLDRWVQRHLGASVLARV------AARRAAAAALLQHSGCLPLCRGELAAAAAAGDAAEAE----EVRPGERTLQIWRAARQVTESAMRSKQTSGASFAVIADLLHAKADFLLGVRPCAAAIAVS 996
            T    P  ++L    GE   LD+WV +H+G S L R+      A RR   AA++ HSG L   + ++       D +++     +VRP +  + IWRAA++V E A+R+K + G+S+AV+A L+  KA FLL + P A A+A +
Sbjct: 1481 THVSSPFLKDLIENCGEAAALDQWVSKHVGESPLMRLGGEPMKATRRTVCAAMIWHSGFLNFIKKQI-------DNSQSNFTESDVRPHDNLMHIWRAAQRVIEWAIRTKNSMGSSYAVVAGLVIRKAQFLLEIEPSAKALAAA 1617

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BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot
Match: W2Q5T5_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q5T5_PHYPN)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-11
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 1

Query:  595 TRGLDPIFEELRAGRGEGGRLDRWVQRHLGASVLARV------AARRAAAAALLQHSGCLPLCRGELAAAAAAGDAAEAE----EVRPGERTLQIWRAARQVTESAMRSKQTSGASFAVIADLLHAKADFLLGVRPCAAAIAVS 996
            T    P  ++L    GE   LD+WV +H+G S L R+      A RR   AA++ HSG L   + ++       D +++     +VRP +  + IWRAA++V E A+R+K + G+S+AV+A L+  KA FLL + P A A+A +
Sbjct: 1520 THVSSPFLKDLIENCGEAAALDQWVSKHVGESPLMRLGGEPMKATRRTVCAAMIWHSGFLNFIKKQI-------DNSQSNFTESDVRPHDNLMHIWRAAQRVIEWAIRTKNSMGSSYAVVAGLVIRKAQFLLEIEPSAKALAAA 1656

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig21551.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A024GC57_9STRA	1.180e-12	37.50	Uncharacterized protein n=1 Tax=Albugo candida Tax...	[more]
F0WEA1_9STRA	3.810e-12	37.59	HECT E3 ubiquitin ligase putative n=1 Tax=Albugo l...	[more]
A0A0W8DND8_PHYNI	1.570e-11	36.11	NFX1-type zinc finger-containing protein 1 n=1 Tax...	[more]
W2Q5T5_PHYPN	1.640e-11	36.11	Uncharacterized protein n=11 Tax=Phytophthora TaxI...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig21551	contig	P-wetherbeei_contig21551:3..1041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	653948.CCA19532
Preferred name	TRIM67
PFAMs	HECT,SPRY,ZZ,fn3,zf-B_box,zf-C3HC4,zf-C3HC4_3,zf-RING_UBOX
Model size	1022
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K00688,ko:K05288,ko:K10649,ko:K21997
KEGG Reaction	R02111,R05923,R08107
KEGG Pathway	ko00500,ko00563,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map00563,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting category	other localisation
GOs	GO:0000149,GO:0000902,GO:0000904,GO:0001505,GO:0001654,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006836,GO:0006887,GO:0006928,GO:0006935,GO:0006937,GO:0006942,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007423,GO:0008016,GO:0008021,GO:0008037,GO:0008038,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010498,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010959,GO:0010975,GO:0010976,GO:0012505,GO:0016043,GO:0016079,GO:0016192,GO:0016198,GO:0016199,GO:0016567,GO:0016740,GO:0017156,GO:0017157,GO:0017158,GO:0019222,GO:0019538,GO:0019787,GO:0019904,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0022898,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0023061,GO:0030030,GO:0030031,GO:0030133,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030544,GO:0031072,GO:0031175,GO:0031252,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031333,GO:0031338,GO:0031339,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032970,GO:0032989,GO:0032990,GO:0033043,GO:0033267,GO:0033563,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035542,GO:0035544,GO:0035637,GO:0036211,GO:0036477,GO:0038007,GO:0040011,GO:0040012,GO:0042176,GO:0042221,GO:0042330,GO:0042391,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0043412,GO:0043632,GO:0044057,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044295,GO:0044297,GO:0044325,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045760,GO:0045823,GO:0045862,GO:0045920,GO:0045933,GO:0045955,GO:0045989,GO:0045995,GO:0046578,GO:0046580,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046983,GO:0048468,GO:0048471,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0048936,GO:0050767,GO:0050769,GO:0050770,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051056,GO:0051058,GO:0051087,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051960,GO:0051962,GO:0055117,GO:0055120,GO:0060255,GO:0060284,GO:0060306,GO:0060307,GO:0060341,GO:0060452,GO:0060627,GO:0061337,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070382,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0086004,GO:0086019,GO:0086065,GO:0090257,GO:0090325,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098793,GO:0098900,GO:0098901,GO:0098903,GO:0098910,GO:0098911,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099503,GO:0099504,GO:0099512,GO:0099536,GO:0099537,GO:0099623,GO:0099643,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1901016,GO:1901018,GO:1901207,GO:1901379,GO:1901381,GO:1901564,GO:1901565,GO:1901575,GO:1902259,GO:1902261,GO:1902531,GO:1902532,GO:1903050,GO:1903052,GO:1903115,GO:1903116,GO:1903305,GO:1903306,GO:1903362,GO:1903364,GO:1903522,GO:1903524,GO:1903530,GO:1903531,GO:1903760,GO:1903762,GO:1903779,GO:1903781,GO:1903818,GO:1903827,GO:1903947,GO:1903949,GO:1903952,GO:1903954,GO:1904062,GO:1904064,GO:1905024,GO:1905026,GO:1905031,GO:1905033,GO:1905330,GO:2000026,GO:2000027,GO:2000058,GO:2000060,GO:2000826,GO:2001257,GO:2001259
Exons	2
Evalue	6.24e-13
EggNOG OGs	COG5184@1\|root,KOG2242@1\|root,KOG4367@1\|root,KOG4582@1\|root,KOG1426@2759\|Eukaryota,KOG2242@2759\|Eukaryota,KOG4367@2759\|Eukaryota,KOG4582@2759\|Eukaryota
EC	2.4.1.1
Description	zinc ion binding
Cds size	1020
COG category	V
CAZy	GT35
BRITE	ko00000,ko00001,ko01000,ko04121,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186228.9081452-CDS-P-wetherbeei_contig21551:2..708	1683186228.9081452-CDS-P-wetherbeei_contig21551:2..708	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig21551 3..708 +
1683186228.9188192-CDS-P-wetherbeei_contig21551:726..1040	1683186228.9188192-CDS-P-wetherbeei_contig21551:726..1040	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig21551 727..1040 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig21551.1.1	prot_P-wetherbeei_contig21551.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig21551 3..1040 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig21551:3..1041+
coding sequence from alignment at P-wetherbeei_contig21551:3..1041+

protein sequence of mRNA_P-wetherbeei_contig21551.1.1

>prot_P-wetherbeei_contig21551.1.1 ID=prot_P-wetherbeei_contig21551.1.1|Name=mRNA_P-wetherbeei_contig21551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
GGPGGGGTNDDAAEDSLSEEEEEANGGDGGSGSGGGGGGGGESAASSVAG
DDATGSVAQQPGAAAGASSGDAGNAAGAAGAAGAGGSGSGTADGETVELV
AYWRRSELLSGGLALEEVRPAVVAALRLYAPDGDDAVAARWQASAMPWLG
ASDGEQAGGRARASGGDVRSATSAAAASVATAAADAEGGAGTSGGGGVTR
GLDPIFEELRAGRGEGGRLDRWVQRHLGASVLARVAARRAAAAALLQHSG
CLPLCRGELAAAAAAGDAAEAEEVRPGERTLQIWRAARQVTESAMRSKQT
SGASFAVIADLLHAKADFLLGVRPCAAAIAVSAAGAEAVA

mRNA from alignment at P-wetherbeei_contig21551:3..1041+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig21551.1.1 ID=mRNA_P-wetherbeei_contig21551.1.1|Name=mRNA_P-wetherbeei_contig21551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-wetherbeei_contig21551:3..1041+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCCCCGGCGGCGGCGGTACCAACGATGACGCGGCCGAAGACAGCCT
CAGCGAGGAAGAAGAGGAAGCCAATGGCGGCGACGGCGGCAGCGGGAGCG
GCGGCGGTGGTGGCGGCGGCGGGGAAAGTGCCGCATCCAGCGTTGCCGGC
GACGACGCCACGGGCAGCGTGGCGCAGCAACCCGGTGCCGCGGCAGGCGC
TTCGTCCGGTGATGCTGGTAACGCCGCCGGCGCAGCAGGGGCCGCAGGTG
CTGGCGGTAGCGGCAGCGGTACCGCAGATGGCGAGACGGTTGAGCTTGTG
GCGTACTGGCGGCGTTCGGAGCTGCTCAGCGGCGGGCTAGCATTGGAAGA
GGTGCGCCCCGCGGTGGTGGCAGCGCTCCGTCTCTACGCTCCGGATGGCG
ACGATGCCGTCGCGGCGCGCTGGCAGGCCTCTGCAATGCCGTGGCTGGGC
GCCTCTGACGGCGAGCAAGCTGGCGGTCGTGCCAGAGCCAGTGGTGGCGA
TGTTCGAAGCGCCACTAGCGCCGCTGCTGCTTCCGTCGCTACCGCTGCCG
CCGATGCCGAGGGCGGCGCGGGCACCAGCGGCGGCGGCGGTGTCACAAGA
GGGCTGGACCCCATTTTTGAGGAGCTTCGCGCCGGACGCGGTGAGGGCGG
TCGGCTTGACCGCTGGGTGCAGCGGCACTTGGGCGCGTCGGTGCTCGCCC
GAGTGGGCGGTGAGCCCATGGCAGCGGCGCGGCGGGCGGCGGCGGCGGCG
CTCCTGCAGCACTCGGGCTGTCTACCGCTGTGCCGCGGCGAGCTGGCGGC
GGCGGCCGCCGCCGGCGACGCCGCCGAGGCCGAGGAGGTGCGGCCGGGGG
AACGCACACTGCAGATCTGGCGGGCAGCGCGGCAGGTGACGGAGAGCGCC
ATGCGTAGCAAGCAGACGTCGGGCGCCTCGTTCGCCGTCATCGCCGACCT
TCTGCATGCCAAGGCGGATTTTTTGCTGGGAGTGCGTCCCTGTGCCGCGG
CCATCGCGGTGTCAGCGGCGGGTGCCGAGGCAGTGGCGT

Coding sequence (CDS) from alignment at P-wetherbeei_contig21551:3..1041+

>mRNA_P-wetherbeei_contig21551.1.1 ID=mRNA_P-wetherbeei_contig21551.1.1|Name=mRNA_P-wetherbeei_contig21551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig21551:3..1041+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCCCCGGCGGCGGCGGTACCAACGATGACGCGGCCGAAGACAGCCT
CAGCGAGGAAGAAGAGGAAGCCAATGGCGGCGACGGCGGCAGCGGGAGCG
GCGGCGGTGGTGGCGGCGGCGGGGAAAGTGCCGCATCCAGCGTTGCCGGC
GACGACGCCACGGGCAGCGTGGCGCAGCAACCCGGTGCCGCGGCAGGCGC
TTCGTCCGGTGATGCTGGTAACGCCGCCGGCGCAGCAGGGGCCGCAGGTG
CTGGCGGTAGCGGCAGCGGTACCGCAGATGGCGAGACGGTTGAGCTTGTG
GCGTACTGGCGGCGTTCGGAGCTGCTCAGCGGCGGGCTAGCATTGGAAGA
GGTGCGCCCCGCGGTGGTGGCAGCGCTCCGTCTCTACGCTCCGGATGGCG
ACGATGCCGTCGCGGCGCGCTGGCAGGCCTCTGCAATGCCGTGGCTGGGC
GCCTCTGACGGCGAGCAAGCTGGCGGTCGTGCCAGAGCCAGTGGTGGCGA
TGTTCGAAGCGCCACTAGCGCCGCTGCTGCTTCCGTCGCTACCGCTGCCG
CCGATGCCGAGGGCGGCGCGGGCACCAGCGGCGGCGGCGGTGTCACAAGA
GGGCTGGACCCCATTTTTGAGGAGCTTCGCGCCGGACGCGGTGAGGGCGG
TCGGCTTGACCGCTGGGTGCAGCGGCACTTGGGCGCGTCGGTGCTCGCCC
GAGTGGCGGCGCGGCGGGCGGCGGCGGCGGCGCTCCTGCAGCACTCGGGC
TGTCTACCGCTGTGCCGCGGCGAGCTGGCGGCGGCGGCCGCCGCCGGCGA
CGCCGCCGAGGCCGAGGAGGTGCGGCCGGGGGAACGCACACTGCAGATCT
GGCGGGCAGCGCGGCAGGTGACGGAGAGCGCCATGCGTAGCAAGCAGACG
TCGGGCGCCTCGTTCGCCGTCATCGCCGACCTTCTGCATGCCAAGGCGGA
TTTTTTGCTGGGAGTGCGTCCCTGTGCCGCGGCCATCGCGGTGTCAGCGG
CGGGTGCCGAGGCAGTGGCG