mRNA_P-wetherbeei_contig21547.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21547.1.1
Unique NamemRNA_P-wetherbeei_contig21547.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21547.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21547contigP-wetherbeei_contig21547:190..1073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCA1
PFAMsAAA_23,SMC_N
Model size885
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-08
EggNOG OGsCOG0497@1|root,2RZ0Y@2759|Eukaryota
DescriptionMay be involved in recombinational repair of damaged DNA
Cds size882
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.7649944-CDS-P-wetherbeei_contig21547:189..10711683186228.7649944-CDS-P-wetherbeei_contig21547:189..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21547 190..1071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21547.1.1prot_P-wetherbeei_contig21547.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21547 190..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21547.1.1

>prot_P-wetherbeei_contig21547.1.1 ID=prot_P-wetherbeei_contig21547.1.1|Name=mRNA_P-wetherbeei_contig21547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
RPDEAAVAAAVRRDVGRWRRAEARLRRLEARRHGGFGGSGKSGAGGLVAG
AAVDSSGEEEGDDNWGSNGGTEALLSHFVEELDAFEAAESAFLVDAAAAL
QGFAADYGTDALGPLAAYAGPFPGNGNDHDGGSYGTGAAATVAVAATRQV
MTLSKAWPVLRALREALEDLEAERERLAAALRLASYASDADGVRPAVERL
RAALLDASIGAAAGLTRTSSGVLKTAALAGTTVAVGAAAAATARESLSWR
QKEDRRSSRGGGGGLSLDAQVLEAVRDDLDAVEKFLAAAAAKLS
back to top

mRNA from alignment at P-wetherbeei_contig21547:190..1073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21547.1.1 ID=mRNA_P-wetherbeei_contig21547.1.1|Name=mRNA_P-wetherbeei_contig21547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=884bp|location=Sequence derived from alignment at P-wetherbeei_contig21547:190..1073+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCCGACGAGGCGGCGGTCGCCGCCGCCGTCCGGCGCGACGTGGGCCG
GTGGCGGCGGGCGGAAGCGCGGCTGCGGCGGCTAGAGGCGCGGCGACATG
GTGGGTTTGGCGGCAGCGGCAAAAGCGGCGCCGGAGGGCTGGTGGCGGGA
GCGGCGGTTGATTCGTCCGGCGAAGAAGAGGGAGACGACAATTGGGGTAG
CAACGGTGGCACGGAGGCGTTGCTGTCCCATTTCGTGGAGGAGTTGGACG
CGTTTGAGGCCGCCGAAAGCGCATTTCTGGTAGACGCTGCGGCGGCTTTG
CAGGGATTCGCGGCCGATTACGGCACGGATGCCCTCGGACCTCTTGCGGC
ATATGCCGGCCCGTTCCCAGGTAACGGCAACGACCACGATGGCGGCAGTT
ACGGAACAGGCGCGGCAGCAACGGTAGCAGTGGCAGCAACTCGACAGGTG
ATGACGCTCTCTAAGGCCTGGCCGGTGCTGCGAGCACTTCGCGAGGCGCT
CGAGGATTTGGAGGCGGAGAGGGAGCGGCTGGCGGCGGCGCTGCGCCTCG
CGTCGTACGCATCGGACGCCGACGGCGTGCGCCCGGCCGTGGAGCGCCTC
CGCGCCGCGCTGCTCGACGCCAGCATCGGTGCCGCAGCGGGACTAACCAG
GACATCCAGTGGCGTCCTTAAAACGGCGGCGTTGGCGGGCACGACGGTGG
CAGTGGGAGCAGCGGCAGCGGCAACGGCAAGAGAAAGTTTATCATGGCGT
CAGAAAGAGGATCGCCGCAGCAGCAGAGGCGGCGGCGGCGGGCTGTCGCT
GGACGCGCAGGTCCTCGAAGCTGTGCGCGACGACCTCGACGCGGTGGAAA
AGTTCCTGGCGGCGGCCGCCGCCAAGCTGTCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21547:190..1073+

>mRNA_P-wetherbeei_contig21547.1.1 ID=mRNA_P-wetherbeei_contig21547.1.1|Name=mRNA_P-wetherbeei_contig21547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig21547:190..1073+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCCGACGAGGCGGCGGTCGCCGCCGCCGTCCGGCGCGACGTGGGCCG
GTGGCGGCGGGCGGAAGCGCGGCTGCGGCGGCTAGAGGCGCGGCGACATG
GTGGGTTTGGCGGCAGCGGCAAAAGCGGCGCCGGAGGGCTGGTGGCGGGA
GCGGCGGTTGATTCGTCCGGCGAAGAAGAGGGAGACGACAATTGGGGTAG
CAACGGTGGCACGGAGGCGTTGCTGTCCCATTTCGTGGAGGAGTTGGACG
CGTTTGAGGCCGCCGAAAGCGCATTTCTGGTAGACGCTGCGGCGGCTTTG
CAGGGATTCGCGGCCGATTACGGCACGGATGCCCTCGGACCTCTTGCGGC
ATATGCCGGCCCGTTCCCAGGTAACGGCAACGACCACGATGGCGGCAGTT
ACGGAACAGGCGCGGCAGCAACGGTAGCAGTGGCAGCAACTCGACAGGTG
ATGACGCTCTCTAAGGCCTGGCCGGTGCTGCGAGCACTTCGCGAGGCGCT
CGAGGATTTGGAGGCGGAGAGGGAGCGGCTGGCGGCGGCGCTGCGCCTCG
CGTCGTACGCATCGGACGCCGACGGCGTGCGCCCGGCCGTGGAGCGCCTC
CGCGCCGCGCTGCTCGACGCCAGCATCGGTGCCGCAGCGGGACTAACCAG
GACATCCAGTGGCGTCCTTAAAACGGCGGCGTTGGCGGGCACGACGGTGG
CAGTGGGAGCAGCGGCAGCGGCAACGGCAAGAGAAAGTTTATCATGGCGT
CAGAAAGAGGATCGCCGCAGCAGCAGAGGCGGCGGCGGCGGGCTGTCGCT
GGACGCGCAGGTCCTCGAAGCTGTGCGCGACGACCTCGACGCGGTGGAAA
AGTTCCTGGCGGCGGCCGCCGCCAAGCTGTCG
back to top