mRNA_P-wetherbeei_contig21536.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21536.1.1
Unique NamemRNA_P-wetherbeei_contig21536.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A847ZXK3_9HYPH (PilZ domain-containing protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZXK3_9HYPH)

HSP 1 Score: 102 bits (254), Expect = 2.870e-25
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   16 LDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            +D   +   + +++GR+MLPD++EH CQV ++T  GATF+T T+P     IVAYLEELGR+E ++   VPGGFR+ ++  GSRLE+L+ R+
Sbjct:   10 VDHITNKGGSSIIFGRFMLPDMTEHACQVLDITADGATFITGTVPAANSNIVAYLEELGRVEVIAGVQVPGGFRVRYAASGSRLERLQQRV 100          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A6G6X257_9HYPH (PilZ domain-containing protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6X257_9HYPH)

HSP 1 Score: 101 bits (252), Expect = 4.600e-25
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   19 DEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            DE A P    VL+GR+MLPD SE+PCQV +LT  GA F T   P+ G  IVAY++E+GR+E VS + VPGGFRI FS KG R E+  +R+
Sbjct:    4 DEPAGPT---VLFGRFMLPDTSEYPCQVNDLTVDGALFSTAAAPEAGTQIVAYIDEIGRVEGVSGETVPGGFRIHFSHKGQRRERFASRL 90          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: UPI0019A746CB (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019A746CB)

HSP 1 Score: 100 bits (248), Expect = 1.750e-24
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   46 RVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            + L+GR+MLPD SEHPCQV  ++  GA F+T  +P IG  IVAYLEE+GRIEA S + V GGFR++FSL G+R ++ E R+
Sbjct:    8 QTLFGRFMLPDTSEHPCQVHGISLDGAVFITAQVPPIGQTIVAYLEEVGRIEATSAEPVEGGFRVTFSLTGARRDRFETRL 88          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: UPI0018C47CB2 (PilZ domain-containing protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C47CB2)

HSP 1 Score: 99.0 bits (245), Expect = 6.620e-24
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   13 KLDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            +LD A+   Q  +L  R+MLPD SEH CQV +LT  GATFL D +P+ G  ++AY+EELGRIEAV+ +A   GF + ++LKG+RLE+L+ RI
Sbjct:    8 RLDSAS---QTNLLTARFMLPDQSEHVCQVRDLTLEGATFLADVVPEAGQIVIAYIEELGRIEAVTGEATHHGFTVLYALKGARLERLQQRI 96          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: UPI001904FA2A (PilZ domain-containing protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001904FA2A)

HSP 1 Score: 97.8 bits (242), Expect = 1.910e-23
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 ATAEKLDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            AT  +   A  P    VL+GR+MLPD+SE+ CQV+ LT  GA F T   P+    IVAY++E+GR+E +S  AVPGGFRI FS +G R E+   R+
Sbjct:    6 ATGARFSSADEPAGPAVLFGRFMLPDMSEYSCQVSELTVDGAVFTTAAAPEAATQIVAYIDEIGRVEGISGDAVPGGFRIVFSHQGQRRERFANRL 101          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A537NU45_9PROT (PilZ domain-containing protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NU45_9PROT)

HSP 1 Score: 94.0 bits (232), Expect = 6.030e-22
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 ATAEKLDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            AT  +   A  P    V++GR+MLPD+SE+PCQV+ LT  GA F   T+PD    IVAY++E+GR+E +S + V GGFR+ FS  G R ++  +R+
Sbjct:    6 ATGARFPSADEPVALGVVFGRFMLPDMSEYPCQVSELTVDGARFAARTVPDRDTQIVAYIDEVGRVEGLSGEPVQGGFRVVFSHTGQRKDRFASRL 101          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A537NXW5_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NXW5_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 1.760e-21
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   49 VLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            V++GR+MLPD+SE+PCQV+ LT  GA F   T+PD    IVAY++E+GR+E +S + V GGFR+ FS  G R ++  +R+
Sbjct:    5 VVFGRFMLPDMSEYPCQVSELTVDGARFAARTVPDRDTQIVAYIDEVGRVEGLSGEPVQGGFRVVFSHTGQRKDRFASRL 84          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A3B0RAQ4_9ZZZZ (PilZ domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RAQ4_9ZZZZ)

HSP 1 Score: 76.6 bits (187), Expect = 3.020e-15
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 TAEKLDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            ++E+ D   S    +VL+GR MLPD +EHP Q++ ++T GAT LT      G+ IVAY++E+GR+EA       GG  + F    SR  +LE ++
Sbjct:    7 SSEQQDAGQSDGAHQVLFGRLMLPDQTEHPFQISQISTEGATILTQVTAPAGIKIVAYIDEIGRVEANVIAEFDGGIGLEFIANESRRSRLEQKL 101          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A848YAQ8_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848YAQ8_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 9.470e-14
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   43 ARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            + VL+GRYM PD  E+PCQV  L  +    +     + G  IVAYL+++GRIE +       GF IS SL GSRLE+ E R+
Sbjct:   20 SEVLFGRYMRPDQQEYPCQVATLGPSKIEVVAQHEVEFGEHIVAYLDQIGRIEGIVSARNEAGFTISLSLSGSRLERFEKRL 101          
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Match: A0A7Y2FU30_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FU30_9HYPH)

HSP 1 Score: 71.6 bits (174), Expect = 1.400e-13
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   79 LSEHPCQVTNLTTTGATFLTDTIPDIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI 288
            +SEHPCQVT  T  GA FLT+    +G+ +VAY++E+GR+EA     +PGGF + FSL  +R ++L  R+
Sbjct:    1 MSEHPCQVTRATPKGAVFLTELELPMGVKVVAYIDEIGRVEAQVADRLPGGFGVRFSLTEARQKRLSERL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21536.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZXK3_9HYPH2.870e-2548.35PilZ domain-containing protein n=1 Tax=Phyllobacte... [more]
A0A6G6X257_9HYPH4.600e-2555.56PilZ domain-containing protein n=1 Tax=Nordella sp... [more]
UPI0019A746CB1.750e-2456.79PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
UPI0018C47CB26.620e-2453.26PilZ domain-containing protein n=1 Tax=Aestuariivi... [more]
UPI001904FA2A1.910e-2348.96PilZ domain-containing protein n=1 Tax=Aestuariivi... [more]
A0A537NU45_9PROT6.030e-2245.83PilZ domain-containing protein n=2 Tax=Alphaproteo... [more]
A0A537NXW5_9PROT1.760e-2150.00Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A3B0RAQ4_9ZZZZ3.020e-1540.00PilZ domain-containing protein n=1 Tax=hydrotherma... [more]
A0A848YAQ8_9HYPH9.470e-1445.12PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A7Y2FU30_9HYPH1.400e-1347.14PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21536contigP-wetherbeei_contig21536:35..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog631454.N177_2028
Preferred nameMA20_31715
PFAMsPilZ
Model size288
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.09e-13
EggNOG OGs28I3D@1|root,2Z876@2|Bacteria,1P0DR@1224|Proteobacteria,2TTG2@28211|Alphaproteobacteria,1JPH5@119043|Rhodobiaceae
DescriptionPilZ domain
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.5460439-CDS-P-wetherbeei_contig21536:34..3221683186228.5460439-CDS-P-wetherbeei_contig21536:34..322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21536 35..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21536.1.1prot_P-wetherbeei_contig21536.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21536 35..322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21536.1.1

>prot_P-wetherbeei_contig21536.1.1 ID=prot_P-wetherbeei_contig21536.1.1|Name=mRNA_P-wetherbeei_contig21536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
ATAEKLDEAASPDQARVLYGRYMLPDLSEHPCQVTNLTTTGATFLTDTIP
DIGLPIVAYLEELGRIEAVSDKAVPGGFRISFSLKGSRLEKLEARI
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mRNA from alignment at P-wetherbeei_contig21536:35..322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21536.1.1 ID=mRNA_P-wetherbeei_contig21536.1.1|Name=mRNA_P-wetherbeei_contig21536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig21536:35..322- (Phaeothamnion wetherbeei SAG_119_79)
GCAACCGCCGAGAAACTTGATGAGGCCGCAAGCCCGGACCAAGCGAGGGT ATTGTATGGCCGCTACATGCTTCCCGATCTGTCTGAGCACCCCTGCCAAG TCACCAATCTCACCACCACCGGCGCCACCTTCCTGACCGATACAATTCCA GACATTGGCCTGCCGATTGTGGCCTATCTCGAAGAACTGGGCCGCATTGA AGCGGTCTCCGACAAGGCCGTGCCCGGCGGCTTCCGCATTTCATTTTCCC TCAAGGGCAGCCGCCTTGAAAAACTCGAAGCCCGCATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21536:35..322-

>mRNA_P-wetherbeei_contig21536.1.1 ID=mRNA_P-wetherbeei_contig21536.1.1|Name=mRNA_P-wetherbeei_contig21536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig21536:35..322- (Phaeothamnion wetherbeei SAG_119_79)
GCAACCGCCGAGAAACTTGATGAGGCCGCAAGCCCGGACCAAGCGAGGGT
ATTGTATGGCCGCTACATGCTTCCCGATCTGTCTGAGCACCCCTGCCAAG
TCACCAATCTCACCACCACCGGCGCCACCTTCCTGACCGATACAATTCCA
GACATTGGCCTGCCGATTGTGGCCTATCTCGAAGAACTGGGCCGCATTGA
AGCGGTCTCCGACAAGGCCGTGCCCGGCGGCTTCCGCATTTCATTTTCCC
TCAAGGGCAGCCGCCTTGAAAAACTCGAAGCCCGCATT
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