mRNA_P-wetherbeei_contig21533.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21533.1.1
Unique NamemRNA_P-wetherbeei_contig21533.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A6I0EML8_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A6I0EML8_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 6.480e-14
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   49 SSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVER 204
            SSF EA E+D +YWW+Q+ + R+  LE +R++AYGYDPAT+RLQR LEV E+
Sbjct:   19 SSFEEAAEADNRYWWAQSPQKRLRALEYMRQVAYGYDPATARLQRVLEVAEQ 70          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A7X4F9E5_9BACT (Uncharacterized protein n=3 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X4F9E5_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 5.450e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 LTAMDLPRVERT-LQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVE 201
            + A+D  RV++    V SSF EA+ +D+ YW S+T + RMA LE +R+I YGYDP T RLQR LEVVE
Sbjct:    1 MRAIDSFRVDKEEFSVLSSFEEADVADKAYWHSKTPQERMAALELMRQINYGYDPTTERLQRVLEVVE 68          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A6L8F2I8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6L8F2I8_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 5.180e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   43 VFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVE 201
            V SSF EA+E+D+ YW S++ + RMA LE +R+I YGYDP T RLQR LE+ E
Sbjct:   16 VLSSFEEADEADKAYWHSKSPQERMAALELMRQINYGYDPTTERLQRVLEIAE 68          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A1Q7YCF6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium 13_1_20CM_3_53_8 TaxID=1803431 RepID=A0A1Q7YCF6_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 3.470e-11
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    4 TAMDLPRVERTLQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVER 204
            T  +L +V+RT  V +S  E++E +  YW S+T E R+  LE +R+I YGYDPAT+RLQR LE+ +R
Sbjct:    3 TQEELLKVDRTAFVVTSLHESDEKE--YWLSKTPEERLQALELMRQIVYGYDPATARLQRVLEIAQR 67          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A3A0CM30_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CM30_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-10
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   10 MDLPRVERTLQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVE 201
            +D+ RV+R++ V  +  + E  +R YW S+T E R+  LE +R+I YGYDPAT RLQR LE+VE
Sbjct:   25 IDVARVDRSIMVHGTLDD-EGDERAYWHSRTPEERLEALELMRQILYGYDPATERLQRVLEIVE 87          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A1G0WS35_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium RIFOXYC2_FULL_35_21 TaxID=1798452 RepID=A0A1G0WS35_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 5.440e-10
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   22 RVERTLQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVE 201
            ++++T     +F EA E D+ YW S+T + R+A LE +R++ YGYDP T+R+QR L VVE
Sbjct:    7 KMDKTAFSICTFEEAAEQDKAYWLSKTPQVRLAALEYMRQMLYGYDPDTARIQRILTVVE 66          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A6L8GX54_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6L8GX54_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-9
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    4 TAMDLPRVERT-LQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVERP 207
            T +D+ R++R+ L V S F  ++  D++YW S+T + R+A LE +R+I YGYDP T+RL+R  E+VE P
Sbjct:    6 TDIDIFRIDRSKLSVTSLFDTSD--DKEYWLSKTPQERLAALELMRQINYGYDPTTARLERVFEIVEFP 72          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A6J4NJM7_9BACT (Uncharacterized protein n=1 Tax=uncultured Phycisphaerae bacterium TaxID=904963 RepID=A0A6J4NJM7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.670e-9
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   16 LPRVERT-LQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATS--RLQRFLEVVERPG 210
            +P+++RT L+VF SF EA++ DR++WWS+T   R+  LE LRR  Y Y       R QR L VVE  G
Sbjct:   53 IPKMQRTVLRVFDSFEEADQHDREFWWSRTPAERLRELERLRRFNYSYGEGRPLPRFQRLLRVVELGG 120          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A2N2NIH9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-3 TaxID=2013726 RepID=A0A2N2NIH9_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-9
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   16 LPRVERTLQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVER 204
            +P++++     SS   AE  +  YW+S+T + RM  +E +R+I YGYDPAT+RLQR LE+ E+
Sbjct:    1 MPKLDKNTITISSI-NAESDEIAYWYSKTPQERMEAIEVMRQIIYGYDPATTRLQRVLEITEQ 62          
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Match: A0A495ZCF4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZCF4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-9
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   76 DRQYWWSQTAEARMAHLEELRRIAYGYDPATSRLQRFLEVVERP 207
            D++YW S+T + R+A LE +R+I YGYDP T RLQR LE+VE P
Sbjct:   34 DKEYWLSKTPQERLAALELMRQINYGYDPTTDRLQRVLEIVELP 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21533.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I0EML8_9BACT6.480e-1459.62Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
A0A7X4F9E5_9BACT5.450e-1354.41Uncharacterized protein n=3 Tax=Candidatus Poribac... [more]
A0A6L8F2I8_9BACT5.180e-1258.49Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A1Q7YCF6_9BACT3.470e-1149.25Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A3A0CM30_9BACT1.120e-1050.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A1G0WS35_9BACT5.440e-1046.67Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
A0A6L8GX54_9BACT1.270e-946.38Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A6J4NJM7_9BACT2.670e-947.06Uncharacterized protein n=1 Tax=uncultured Phycisp... [more]
A0A2N2NIH9_9CHLR2.780e-944.44Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A495ZCF4_9BACT2.880e-959.09Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21533contigP-wetherbeei_contig21533:53..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.4495282-UTR-P-wetherbeei_contig21533:52..611683186228.4495282-UTR-P-wetherbeei_contig21533:52..61Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21533 53..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.459567-CDS-P-wetherbeei_contig21533:61..2681683186228.459567-CDS-P-wetherbeei_contig21533:61..268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21533 62..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21533.1.1prot_P-wetherbeei_contig21533.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21533 62..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21533.1.1

>prot_P-wetherbeei_contig21533.1.1 ID=prot_P-wetherbeei_contig21533.1.1|Name=mRNA_P-wetherbeei_contig21533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MDLPRVERTLQVFSSFAEAEESDRQYWWSQTAEARMAHLEELRRIAYGYD
PATSRLQRFLEVVERPGR*
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mRNA from alignment at P-wetherbeei_contig21533:53..268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21533.1.1 ID=mRNA_P-wetherbeei_contig21533.1.1|Name=mRNA_P-wetherbeei_contig21533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig21533:53..268+ (Phaeothamnion wetherbeei SAG_119_79)
TTAACCGCTATGGACTTACCTCGCGTCGAAAGAACTCTCCAGGTCTTTTC TAGCTTTGCCGAAGCTGAAGAGTCTGATCGTCAGTATTGGTGGAGCCAAA CCGCCGAGGCTCGTATGGCCCACCTCGAGGAGTTGCGAAGAATCGCCTAT GGCTACGATCCAGCTACATCAAGACTTCAGAGATTTCTTGAGGTCGTTGA ACGACCAGGGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21533:53..268+

>mRNA_P-wetherbeei_contig21533.1.1 ID=mRNA_P-wetherbeei_contig21533.1.1|Name=mRNA_P-wetherbeei_contig21533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig21533:53..268+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTACCTCGCGTCGAAAGAACTCTCCAGGTCTTTTCTAGCTTTGC
CGAAGCTGAAGAGTCTGATCGTCAGTATTGGTGGAGCCAAACCGCCGAGG
CTCGTATGGCCCACCTCGAGGAGTTGCGAAGAATCGCCTATGGCTACGAT
CCAGCTACATCAAGACTTCAGAGATTTCTTGAGGTCGTTGAACGACCAGG
GCGTTGA
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