mRNA_P-wetherbeei_contig21528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21528.1.1
Unique NamemRNA_P-wetherbeei_contig21528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A177U3T7_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U3T7_9BASI)

HSP 1 Score: 132 bits (332), Expect = 2.350e-36
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:    1 QSALAGTDAVIWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            + A+  TD  +WL+AM+EE+G+H    TWV    PP +  +G RWVF +K  A G   RYKARLVAQGFSQ PGVDYD TYAPV     +  LLALA   G+ +HQL VVTAYL   L+  +YM  P
Sbjct:   20 REAMRRTDWGLWLEAMREEMGSHAEMGTWVLEELPPNRDAVGSRWVFKLKLDAQGVGARYKARLVAQGFSQTPGVDYDETYAPVTRLVTIHTLLALAVYLGWHVHQLGVVTAYLYGKLKSPIYMRQP 146
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A151T526_CAJCA (Copia protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T526_CAJCA)

HSP 1 Score: 128 bits (322), Expect = 6.600e-36
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   34 WLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            W +AM++E+ A + N TW     P  K+ IGCRW+F +K  A+G + RYKARLVA+G++Q  G+DY+ T+APV   + +R++LALAA FG+ +HQLDV  A+L+  LEEE+YM  P
Sbjct:    6 WTQAMKKEMNALKRNSTWEIVDKPRDKKEIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRVVLALAAHFGWNLHQLDVKNAFLHENLEEEVYMEIP 121
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 134 bits (338), Expect = 2.010e-35
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:    1 QSALAGTDAVIWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            + A+ G ++ +W  AM+EEL + E+ + W     PP K  IG +WVF IK  A+G + RYKARLVAQGF+Q+PGVDY+ TY+PV++  A+RLL  LA    + IHQ+DV TAYLN  L+EE+YM  P
Sbjct:   30 KQAMEGPESDLWKAAMEEELTSLEVMKVWEFTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCP 156
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 131 bits (329), Expect = 2.210e-35
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   34 WLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            W +AM+EE+ A E N TW     P  K+ IGCRW+F +K  A+G + RYKARLVA+G++Q  G+DY  T+APV   + +R++LAL A FG+++HQLDV +A+L+  LEEE+YM  P
Sbjct:    6 WTQAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIP 121
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A0L9TCZ8_PHAAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TCZ8_PHAAN)

HSP 1 Score: 129 bits (325), Expect = 2.750e-35
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   34 WLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            W +AM+EE+ A E N TW     P  K+ +GCRW+F +K  A+G + RYKARLVA+G++Q  G+DY+ T+APV   + +R++LALAA F +++HQLDV  A+L+  LEEE+YM  P
Sbjct:    6 WTQAMKEEMNALERNSTWEIVDKPRDKKAVGCRWLFTVKHKADGTIERYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRVILALAAHFRWDLHQLDVKNAFLHGDLEEEVYMDIP 121
[Close]
BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: H3GB80_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB80_PHYRM)

HSP 1 Score: 129 bits (324), Expect = 4.330e-35
Identity = 60/127 (47.24%), Postives = 89/127 (70.08%), Query Frame = 1 
Query:    1 QSALAGTDAVIWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            +SA+  +DAV W +A   E  +   N TW     P  ++ IGCRWVF +K    G + R+KARLVA+GFSQ+ G+DYD T+APV    ++R++L+LAA++G ++HQ+DV TA+LN VL+E++YM+ P
Sbjct:    6 KSAMESSDAVKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQP 132
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A7I8L228_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L228_SPIIN)

HSP 1 Score: 130 bits (327), Expect = 5.490e-35
Identity = 58/116 (50.00%), Postives = 84/116 (72.41%), Query Frame = 1 
Query:   34 WLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            W KAM+EE+ + E NRTW     P  +R+IG +WV+ +KR  NGA+ +YK RLV +G++QR G+DYD  +APV+  D +RLL+ALAA  G+E+H +DV +A+LN  L+EE+Y+  P
Sbjct:   91 WRKAMEEEMASIEENRTWSLVDLPHGRRVIGLKWVYKVKRDENGAVAKYKTRLVMKGYAQRQGIDYDKVFAPVVRLDTVRLLIALAAHEGWEVHHMDVKSAFLNGDLKEEVYVEQP 206
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BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A5E4GMQ8_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GMQ8_PRUDU)

HSP 1 Score: 130 bits (327), Expect = 9.660e-35
Identity = 58/117 (49.57%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:   31 IWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            +WL AM+EE+ A     TW     P  K L+GC+W+F IK+ A+G++ R+KARLVA+GFSQ PG DY  T++PV+    +R++LALAA FG+++ QLDV  A+L+ +L+EE+YM+ P
Sbjct:   54 VWLTAMKEEIDALHSQGTWSLVPLPHNKNLVGCKWIFKIKKHADGSIARHKARLVAKGFSQEPGQDYGETFSPVVKPTTVRIVLALAAHFGWQLRQLDVKNAFLHGILQEEVYMAQP 170
[Close]
BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: A0A7I8JPU2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JPU2_SPIIN)

HSP 1 Score: 129 bits (323), Expect = 2.340e-34
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:   34 WLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            W KAM+EE+   E NRTW     P   R IG +WV+ +KR  NGA+ +YKARLV +G++QR G+DYD  +APV   D +RLL+ALAA  G+E+H +DV +A+LN  L+EE+Y+  P
Sbjct:   86 WRKAMEEEMALIEENRTWSLVDLPHGHRAIGLKWVYKVKRDENGAVAKYKARLVVKGYAQRQGIDYDEVFAPVARLDTVRLLIALAAHEGWEVHHMDVKSAFLNGNLKEEVYVEQP 201
[Close]
BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Match: H3H950_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H950_PHYRM)

HSP 1 Score: 129 bits (324), Expect = 2.590e-34
Identity = 60/127 (47.24%), Postives = 89/127 (70.08%), Query Frame = 1 
Query:    1 QSALAGTDAVIWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIKRAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAP 381
            +SA+  +DAV W +A   E  +   N TW     P  ++ IGCRWVF +K    G + R+KARLVA+GFSQ+ G+DYD T+APV    ++R++L+LAA++G ++HQ+DV TA+LN VL+E++YM+ P
Sbjct:  116 KSAMESSDAVKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQP 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177U3T7_9BASI2.350e-3652.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T526_CAJCA6.600e-3650.00Copia protein n=2 Tax=Cajanus cajan TaxID=3821 Rep... [more]
A0A0A9WI29_LYGHE2.010e-3551.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RGT1_CAJCA2.210e-3550.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L9TCZ8_PHAAN2.750e-3550.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB80_PHYRM4.330e-3547.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7I8L228_SPIIN5.490e-3550.00Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A5E4GMQ8_PRUDU9.660e-3549.57PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A7I8JPU2_SPIIN2.340e-3450.86Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
H3H950_PHYRM2.590e-3447.24Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21528contigP-wetherbeei_contig21528:762..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size381
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size381
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.1957016-CDS-P-wetherbeei_contig21528:761..11421683186228.1957016-CDS-P-wetherbeei_contig21528:761..1142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21528 762..1142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21528.1.1prot_P-wetherbeei_contig21528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21528 762..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21528.1.1

>prot_P-wetherbeei_contig21528.1.1 ID=prot_P-wetherbeei_contig21528.1.1|Name=mRNA_P-wetherbeei_contig21528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
QSALAGTDAVIWLKAMQEELGAHELNRTWVKCTSPPPKRLIGCRWVFAIK
RAANGAMLRYKARLVAQGFSQRPGVDYDVTYAPVMTADAMRLLLALAAEF
GFEIHQLDVVTAYLNAVLEEELYMSAP
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mRNA from alignment at P-wetherbeei_contig21528:762..1142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21528.1.1 ID=mRNA_P-wetherbeei_contig21528.1.1|Name=mRNA_P-wetherbeei_contig21528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig21528:762..1142+ (Phaeothamnion wetherbeei SAG_119_79)
CAAAGCGCGCTGGCCGGCACCGACGCTGTCATTTGGCTTAAAGCGATGCA
AGAGGAGCTGGGTGCCCACGAGCTAAACAGAACGTGGGTTAAATGCACGT
CTCCGCCGCCGAAGCGTTTGATCGGCTGTCGCTGGGTCTTTGCAATCAAA
CGAGCGGCCAACGGCGCCATGTTGCGGTACAAGGCGCGCTTGGTTGCCCA
GGGGTTTTCCCAGCGCCCTGGCGTCGACTACGACGTTACATACGCTCCTG
TCATGACGGCGGACGCCATGCGTTTGCTTTTGGCGTTAGCAGCGGAGTTT
GGCTTCGAGATCCATCAGCTCGATGTCGTGACGGCCTATCTGAACGCGGT
TTTGGAAGAGGAGCTCTATATGTCCGCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21528:762..1142+

>mRNA_P-wetherbeei_contig21528.1.1 ID=mRNA_P-wetherbeei_contig21528.1.1|Name=mRNA_P-wetherbeei_contig21528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig21528:762..1142+ (Phaeothamnion wetherbeei SAG_119_79)
CAAAGCGCGCTGGCCGGCACCGACGCTGTCATTTGGCTTAAAGCGATGCA
AGAGGAGCTGGGTGCCCACGAGCTAAACAGAACGTGGGTTAAATGCACGT
CTCCGCCGCCGAAGCGTTTGATCGGCTGTCGCTGGGTCTTTGCAATCAAA
CGAGCGGCCAACGGCGCCATGTTGCGGTACAAGGCGCGCTTGGTTGCCCA
GGGGTTTTCCCAGCGCCCTGGCGTCGACTACGACGTTACATACGCTCCTG
TCATGACGGCGGACGCCATGCGTTTGCTTTTGGCGTTAGCAGCGGAGTTT
GGCTTCGAGATCCATCAGCTCGATGTCGTGACGGCCTATCTGAACGCGGT
TTTGGAAGAGGAGCTCTATATGTCCGCGCCA
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