mRNA_P-wetherbeei_contig21526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21526.1.1
Unique NamemRNA_P-wetherbeei_contig21526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: D8LBA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-9
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRP 126
            FARQTGDL +LSR DLKVIAL YMLER+ETG  HLR AP+RP
Sbjct:  143 FARQTGDLRSLSRVDLKVIALAYMLERQETGAGHLRTAPIRP 184
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A6H5KFQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.710e-9
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRP 126
            FARQTGDL +LSR DLKVIAL YMLER+ETG  HLR AP+RP
Sbjct:  143 FARQTGDLRSLSRVDLKVIALAYMLERQETGAVHLRTAPIRP 184
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A1Y2CNP6_9FUNG (20S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CNP6_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 6.040e-7
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPVIALRKPKP 153
            FA++TGD   LS+TDLKV+ALT+MLE+E++G AHLR  P+RP   +   KP
Sbjct:  107 FAKKTGDFNVLSKTDLKVLALTWMLEKEKSGTAHLRTEPMRPTQFVPAKKP 157
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A4V1IR51_9FUNG (20S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IR51_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 1.080e-6
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVR 123
            FA++TGD  ALS  DLKVIALTYMLE+E TG AHLR  P+R
Sbjct:   92 FAKKTGDFAALSAADLKVIALTYMLEKETTGIAHLRTEPIR 132
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A507ET25_9FUNG (2-dehydropantoate 2-reductase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507ET25_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.340e-6
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPV-IALRKPK 150
            FAR+TGD   LS TDL+V+ALTYMLE+E  G AHLR  P++P   A RKP+
Sbjct:   74 FARKTGDFSVLSSTDLRVLALTYMLEKERNGIAHLRTEPMKPQQFAPRKPR 124
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A507FEX1_9FUNG (20S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FEX1_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-6
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPV-IALRKPK 150
            FAR+TGD   LS TDL+V+ALTYMLE+E  G AHLR  P++P   A +KP+
Sbjct:   74 FARKTGDFSVLSSTDLRVLALTYMLEKERNGIAHLRTEPMKPQQFAPKKPR 124
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: C1N1X5_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N1X5_MICPC)

HSP 1 Score: 58.2 bits (139), Expect = 5.910e-6
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPVIALRK 144
            FAR TGDLGALS  D+KVIAL Y LERE  G AHLRA P  P + L K
Sbjct:   62 FARMTGDLGALSEPDVKVIALAYALERETHGVAHLRAEP--PPVTLSK 107
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A7R9TDS1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TDS1_MICPS)

HSP 1 Score: 58.2 bits (139), Expect = 6.850e-6
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPVIALRK 144
            FAR TGDLGALS  D+KVIAL Y LERE  G AHLRA P  P + L K
Sbjct:  111 FARMTGDLGALSEPDVKVIALAYALERETHGVAHLRAEP--PPVTLSK 156
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: A0A507E4E8_9FUNG (20S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E4E8_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 8.670e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPVIALRKPK 150
            F+++TGD GALS  DLKV+ALTYMLE+E  G  HLR  PVR  +  +K K
Sbjct:   99 FSKKTGDFGALSAVDLKVLALTYMLEKEARGVEHLRTEPVRKGVREQKMK 148
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BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Match: J3JU89_DENPD (RNA-binding protein NOB1 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JU89_DENPD)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-5
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPV--RPVIALRKP 147
            F+++TGD  +LS TD+KV+ALTY LE+E+ G AHLR  PV  RP++   KP
Sbjct:   74 FSKKTGDYPSLSLTDIKVMALTYQLEKEKVGTAHLRTEPVQDRPIVNTEKP 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LBA5_ECTSI1.490e-978.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFQ3_9PHAE1.710e-978.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2CNP6_9FUNG6.040e-756.8620S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Rhiz... [more]
A0A4V1IR51_9FUNG1.080e-670.7320S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Blyt... [more]
A0A507ET25_9FUNG1.340e-660.782-dehydropantoate 2-reductase n=1 Tax=Chytriomyces... [more]
A0A507FEX1_9FUNG2.190e-658.8220S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Chyt... [more]
C1N1X5_MICPC5.910e-666.67Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7R9TDS1_MICPS6.850e-666.67Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A507E4E8_9FUNG8.670e-658.0020S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Powe... [more]
J3JU89_DENPD1.250e-554.90RNA-binding protein NOB1 n=1 Tax=Dendroctonus pond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21526contigP-wetherbeei_contig21526:93..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBA5
Preferred nameNOB1
PFAMsNOB1_Zn_bind,PIN_6,WRNPLPNID
Model size1029
Max annot lvl2759|Eukaryota
KEGG koko:K10601,ko:K11883
KEGG Pathwayko03008,ko04120,ko04141,map03008,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000469,GO:0000478,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0019843,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030688,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050877,GO:0050953,GO:0065003,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue2.45e-10
EggNOG OGsCOG1439@1|root,KOG2463@2759|Eukaryota
EC2.3.2.27
Descriptioncleavage involved in rRNA processing
Cds size1029
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186228.1382685-CDS-P-wetherbeei_contig21526:92..11211683186228.1382685-CDS-P-wetherbeei_contig21526:92..1121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21526 93..1121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21526.1.1prot_P-wetherbeei_contig21526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21526 93..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21526.1.1

>prot_P-wetherbeei_contig21526.1.1 ID=prot_P-wetherbeei_contig21526.1.1|Name=mRNA_P-wetherbeei_contig21526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
FARQTGDLGALSRTDLKVIALTYMLEREETGGAHLRAAPVRPVIALRKPK
PLAAAAAATAASCDSEASAAAPGQAAAGMAEAADLAAEGLSPMLAGLESV
GAADGAAEAAEADACGDGDGGDGASAEEGGSGDGSDDSDDDDDDWEPNAG
AGRGGAESGGAEEEGKGDKAELTVAFAGERSASAATARAEPFSLQDDDFP
SLGGPTGGAAATAAAEGDAPLPAPPSATATSWAAAALKAPARPPPLLAPT
APVAVYATRSISSGSADVTAAPAAAAASSELVTTSKESAARTFVAAAPSR
LLGASASHGMSSGLGADEEDDGAGWITPANLDEQRLSGLSMGG
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mRNA from alignment at P-wetherbeei_contig21526:93..1121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21526.1.1 ID=mRNA_P-wetherbeei_contig21526.1.1|Name=mRNA_P-wetherbeei_contig21526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig21526:93..1121+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGCGGCAGACCGGCGACCTCGGAGCGCTGTCGCGGACCGACTTAAA
GGTGATCGCCCTCACGTACATGCTCGAGCGCGAGGAGACGGGCGGGGCGC
ACCTCCGCGCTGCCCCCGTCCGCCCCGTCATCGCGCTGCGTAAGCCCAAA
CCGCTGGCCGCCGCGGCTGCGGCGACGGCGGCGTCCTGTGACTCTGAAGC
CTCGGCGGCGGCGCCTGGACAGGCAGCGGCGGGAATGGCGGAAGCGGCAG
ATCTGGCAGCCGAAGGCCTGTCACCTATGCTGGCCGGGCTGGAAAGCGTG
GGCGCTGCCGATGGCGCGGCGGAGGCTGCGGAGGCAGACGCATGCGGCGA
TGGCGACGGCGGCGACGGAGCCTCAGCGGAGGAGGGGGGAAGCGGAGACG
GCAGCGACGATAGCGATGACGACGACGACGATTGGGAGCCAAATGCTGGT
GCCGGCCGCGGCGGTGCTGAAAGCGGGGGTGCCGAGGAAGAAGGAAAAGG
CGACAAGGCGGAACTGACGGTCGCCTTTGCCGGTGAAAGAAGCGCTTCAG
CAGCTACTGCTCGGGCAGAACCGTTCTCGCTGCAGGACGACGACTTTCCA
TCGCTGGGCGGACCGACCGGCGGAGCCGCGGCTACAGCGGCGGCGGAAGG
AGACGCGCCGCTGCCCGCGCCGCCATCAGCCACCGCCACGTCGTGGGCGG
CGGCGGCGCTGAAGGCCCCGGCCCGGCCGCCGCCGCTGCTGGCTCCCACC
GCCCCTGTGGCGGTGTACGCGACGCGTTCCATCAGCAGCGGTAGTGCCGA
CGTGACAGCGGCTCCCGCCGCCGCCGCCGCTAGTTCGGAGTTGGTCACGA
CATCGAAGGAGTCTGCTGCTCGGACGTTTGTGGCAGCGGCGCCATCGCGG
CTGCTGGGTGCGTCGGCGTCGCATGGCATGTCCTCCGGGCTCGGCGCCGA
CGAGGAGGATGACGGTGCCGGCTGGATCACGCCGGCAAACCTCGACGAGC
AGCGGCTGTCTGGCCTGTCGATGGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21526:93..1121+

>mRNA_P-wetherbeei_contig21526.1.1 ID=mRNA_P-wetherbeei_contig21526.1.1|Name=mRNA_P-wetherbeei_contig21526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig21526:93..1121+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGCGGCAGACCGGCGACCTCGGAGCGCTGTCGCGGACCGACTTAAA
GGTGATCGCCCTCACGTACATGCTCGAGCGCGAGGAGACGGGCGGGGCGC
ACCTCCGCGCTGCCCCCGTCCGCCCCGTCATCGCGCTGCGTAAGCCCAAA
CCGCTGGCCGCCGCGGCTGCGGCGACGGCGGCGTCCTGTGACTCTGAAGC
CTCGGCGGCGGCGCCTGGACAGGCAGCGGCGGGAATGGCGGAAGCGGCAG
ATCTGGCAGCCGAAGGCCTGTCACCTATGCTGGCCGGGCTGGAAAGCGTG
GGCGCTGCCGATGGCGCGGCGGAGGCTGCGGAGGCAGACGCATGCGGCGA
TGGCGACGGCGGCGACGGAGCCTCAGCGGAGGAGGGGGGAAGCGGAGACG
GCAGCGACGATAGCGATGACGACGACGACGATTGGGAGCCAAATGCTGGT
GCCGGCCGCGGCGGTGCTGAAAGCGGGGGTGCCGAGGAAGAAGGAAAAGG
CGACAAGGCGGAACTGACGGTCGCCTTTGCCGGTGAAAGAAGCGCTTCAG
CAGCTACTGCTCGGGCAGAACCGTTCTCGCTGCAGGACGACGACTTTCCA
TCGCTGGGCGGACCGACCGGCGGAGCCGCGGCTACAGCGGCGGCGGAAGG
AGACGCGCCGCTGCCCGCGCCGCCATCAGCCACCGCCACGTCGTGGGCGG
CGGCGGCGCTGAAGGCCCCGGCCCGGCCGCCGCCGCTGCTGGCTCCCACC
GCCCCTGTGGCGGTGTACGCGACGCGTTCCATCAGCAGCGGTAGTGCCGA
CGTGACAGCGGCTCCCGCCGCCGCCGCCGCTAGTTCGGAGTTGGTCACGA
CATCGAAGGAGTCTGCTGCTCGGACGTTTGTGGCAGCGGCGCCATCGCGG
CTGCTGGGTGCGTCGGCGTCGCATGGCATGTCCTCCGGGCTCGGCGCCGA
CGAGGAGGATGACGGTGCCGGCTGGATCACGCCGGCAAACCTCGACGAGC
AGCGGCTGTCTGGCCTGTCGATGGGCGGC
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