mRNA_P-wetherbeei_contig21519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21519.1.1
Unique NamemRNA_P-wetherbeei_contig21519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: D7G577_ECTSI (Autophagy-related protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G577_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.410e-56
Identity = 108/187 (57.75%), Postives = 144/187 (77.01%), Query Frame = 1
Query:    4 VCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            +CE N +TAVLAV+L R+RV VCL+ AL++FDIS+M CL+TLET PNP+G++ALS NEENC+LAFP+   A AGSS                GEV+LY+A  LK++NKV+A R+ V A++FSRDG LLA+ASEQGTV+R+F+VP A  + TLRRG++   ++S++FNAAATRLAVSSS+ T+H+F V
Sbjct:   89 ICEVNFLTAVLAVKLNRKRVAVCLKTALHVFDISDMKCLRTLETAPNPDGVMALSPNEENCHLAFPD--GAKAGSSGGG-------------GEVILYNALDLKVLNKVVACRSRVVAVSFSRDGKLLATASEQGTVIRIFTVPAAVKLYTLRRGSTSCDIYSMSFNAAATRLAVSSSTRTIHIFDV 260          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: A0A835Z475_9STRA (Autophagy-related protein 18 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z475_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.610e-53
Identity = 110/185 (59.46%), Postives = 127/185 (68.65%), Query Frame = 1
Query:    7 CETNLVTAVLAVRLTRRRVVVCLERALYIFDIS-NMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVF 558
            CE N VTAVLAVRL RRRVVV LERAL++FDI+  M CL TL T PNP  +VA S NEENC+LAFP                          GEV++YDA  LK++NKV A ++ VAA+AF R GALLA+ASEQGTVVRVF+VP A  V TLRRGT  +A+ SLAFN +ATRLAV  SS TVHVF
Sbjct:   76 CELNFVTAVLAVRLNRRRVVVALERALHVFDITCAMKCLHTLATVPNPRAVVAFSPNEENCHLAFPGT----------------------GVGEVVMYDALALKVLNKVAACKSRVAAMAFCRSGALLATASEQGTVVRVFTVPGAQQVFTLRRGTYSSAIRSLAFNQSATRLAVCGSSSTVHVF 238          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: G2RGZ1_THETT (Uncharacterized protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2RGZ1_THETT)

HSP 1 Score: 162 bits (410), Expect = 4.200e-44
Identity = 88/188 (46.81%), Postives = 127/188 (67.55%), Query Frame = 1
Query:    4 VCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFP-NCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            +CE    TAVLAVRL R+R+ V LE  +Y++DISNMA L T+ T+PNPNGI +LS + ENCY+A+P   P+   G  + A +           GEV++YD   LK VN + A R+P++ +A + +G  LA+ASE GT++RVFSVP+   +   RRGT  ++++S++FN A+T L VSS+S TVH+FR+
Sbjct:   77 ICELTFPTAVLAVRLNRKRLAVVLEEEIYLYDISNMALLTTIATSPNPNGIFSLSPSSENCYMAYPLPKPREDQGERRPAHAPPLSTLVPPTSGEVIVYDTIALKAVNVIEAHRSPLSCVALNSEGTRLATASETGTIIRVFSVPDGQKLYQFRRGTIPSSIYSMSFNLASTLLCVSSASETVHIFRL 264          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: A0A433PKP9_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PKP9_9FUNG)

HSP 1 Score: 158 bits (400), Expect = 7.180e-44
Identity = 80/188 (42.55%), Postives = 132/188 (70.21%), Query Frame = 1
Query:    1 TVCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            T+CE    T++LAV+L RRR++V LE  +Y++DISNM  L T+ET+PNP  I ALS + ENCY+A+P+    ++ +S  +++           G+V+++DA +L++VN V A ++PV+ +A + +G +LA+AS++GTV+RVFS+P AH +   RRG+  A ++S++FN  ++ L VSS + TVH+F++
Sbjct:   34 TICELTFPTSILAVKLNRRRLIVVLEEQIYVYDISNMKLLHTIETSPNPGAICALSPSSENCYIAYPS--PTSSPTSLFSSTGSSGSHHGSASGDVLIFDALSLQVVNIVQAHKSPVSCIAINSEGTMLATASDKGTVIRVFSIPNAHKIFQFRRGSYPARIYSISFNMVSSLLCVSSDTETVHIFKL 219          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: ATG18_SCLS1 (Autophagy-related protein 18 n=23 Tax=Sclerotiniaceae TaxID=28983 RepID=ATG18_SCLS1)

HSP 1 Score: 160 bits (405), Expect = 9.890e-44
Identity = 88/190 (46.32%), Postives = 124/190 (65.26%), Query Frame = 1
Query:    4 VCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFP-NCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRVLG 570
            +CE    +AVLAVRL R+R  V LE  +Y++DI NM  L T+ T+ NPN I ALS++ ENCYLA+P   P+   G  + A +           GEV+++DA +LK VN V A R P++ +A + DG LLA+ASE GT++RVFSVP+   +   RRGT  + + SL+FN ++T L VSS+S T+H+FR+ G
Sbjct:   72 ICELTFPSAVLAVRLNRKRFAVLLEEEIYLYDIQNMGLLYTISTSANPNAICALSASSENCYLAYPLPKPREETGDKRPAHAPPLSPYVAPTSGEVLIFDAKSLKAVNVVEAHRAPLSCIALNNDGTLLATASETGTIIRVFSVPDGQKLYQFRRGTYPSTIFSLSFNMSSTLLCVSSNSDTIHIFRLGG 261          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: W9YQU7_9EURO (Autophagy-like protein 18 n=1 Tax=Capronia epimyces CBS 606.96 TaxID=1182542 RepID=W9YQU7_9EURO)

HSP 1 Score: 159 bits (403), Expect = 1.910e-43
Identity = 90/192 (46.88%), Postives = 129/192 (67.19%), Query Frame = 1
Query:    4 VCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNG---IVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXX--QGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            +CE    T VLAVRL R+R+V+ LE  +Y++DI  M  L T+ET+PNP G   I ALS + ENCYLA+P  PQ AAGSS    S             GEV+L+DA  L+ VN V A R+P++ + F+ +G +LA+AS++GT++R+FSVP+AH +   RRG+  A ++S+AFN  +T L VSS++ TVH+F++
Sbjct:   75 ICELTFPTTVLAVRLNRKRLVIVLEDQIYLYDIQTMRLLYTIETSPNPTGKTPICALSPSSENCYLAYP-LPQKAAGSSAAPPSHAPPSATHIAPTSGEVLLFDAVKLEAVNVVEAHRSPLSCVTFNNEGTILATASDKGTIIRIFSVPDAHKLYQFRRGSMPARIYSMAFNITSTLLCVSSATETVHIFKL 265          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: S8AK55_DACHA (Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AK55_DACHA)

HSP 1 Score: 158 bits (400), Expect = 2.120e-43
Identity = 88/194 (45.36%), Postives = 130/194 (67.01%), Query Frame = 1
Query:    1 TVCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQA-----AAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRVL 567
            T+CE    TAVLAV+L R+R++V LE  +Y++DISNM  L T+ET+PNPN I ALS + E CYL +P    A     A  S+ N+ +           G+V++YDA+TLK +  + A ++P++ALA S DG  LA++S+QGT++RVF++P    +   RRGT  + ++S+AFN A+T L VSS++ TVH+FR+L
Sbjct:   27 TICELTFPTAVLAVKLNRKRLIVVLEDQIYVYDISNMKLLTTIETSPNPNAICALSPSSEKCYLVYPRPVPASPSPFAPPSNPNSTAASTGISG---SGDVVVYDASTLKTIGMISAHKSPLSALALSSDGTYLATSSDQGTIIRVFALPLGTKMFQFRRGTYPSKIYSMAFNLASTMLCVSSATETVHIFRLL 217          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: ATG18_PENRW (Autophagy-related protein 18 n=21 Tax=Penicillium TaxID=5073 RepID=ATG18_PENRW)

HSP 1 Score: 159 bits (402), Expect = 2.960e-43
Identity = 80/188 (42.55%), Postives = 128/188 (68.09%), Query Frame = 1
Query:    1 TVCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            T+CE    T VLAV+L R+R+V+ LE  +Y++DI  M  L T++T+PNPN I AL+ + ENCY+A+P   +A A +S  A +           G+V+++DA  L+ +N + A R+P+A +A + DG LLA+AS++GT++R+FSVP+ H +   RRG+  + ++S++FN  +T L VSSS+ TVH+F++
Sbjct:   73 TICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLSTIDTSPNPNAICALAPSSENCYMAYPLPQKAPAAASTPAHAPPGTTHVSPTTGDVLIFDAVKLEAINVIEAHRSPLALIALNSDGTLLATASDKGTIIRIFSVPDGHKLYQFRRGSMPSRIYSMSFNTTSTLLCVSSSTETVHIFKL 260          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: A0A2T9Z789_9FUNG (Uncharacterized protein n=2 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Z789_9FUNG)

HSP 1 Score: 158 bits (400), Expect = 3.050e-43
Identity = 83/188 (44.15%), Postives = 122/188 (64.89%), Query Frame = 1
Query:    1 TVCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFPNCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRV 564
            T+CE    T +L V++ RRR+VV LE  +Y++DISNM  L T+ET PNP GI A+SS+ ENC++A+P      + SS N  S            +VM++D NT + ++ + A +  ++ LA + DG LLA++SE+GT+VRVFS+P    +   RRGT  AA+HS+ FNA +T + VSS S T+H+FR+
Sbjct:   70 TICELTFPTTILNVKMNRRRMVVVLEEQIYLYDISNMRLLHTIETAPNPKGICAMSSSSENCFIAYPAPSIDTSNSSSNNGSFQVPVL-----SDVMIFDGNTCEAMSIIQAHKGSISCLAINSDGTLLATSSEKGTLVRVFSIPSFKKIAQFRRGTYSAAIHSITFNAKSTMIIVSSDSDTIHIFRI 252          
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Match: A0A8K0TP23_9PEZI (Protein-vacuolar targeting protein Atg18 n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TP23_9PEZI)

HSP 1 Score: 160 bits (404), Expect = 3.220e-43
Identity = 87/190 (45.79%), Postives = 125/190 (65.79%), Query Frame = 1
Query:    4 VCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPNGIVALSSNEENCYLAFP-NCPQAAAGSSKNAASXXXXXXXXXXQGEVMLYDANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCVVTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRVLG 570
            +CE    +AVLAVRL R+R+ V LE  +Y++DISNM+ L T+ T+PNPN I ALS + ENC++A+P   P+   G  + A +           GEV+++D  TLK VN + A R+P+ +++ S DG LLA+ASE GT++RVFSVP    +   RRGT  + ++S++FN  +T L VSS S TVH+FR+ G
Sbjct:   77 ICELTFPSAVLAVRLNRKRLAVVLESEIYLYDISNMSLLYTIPTSPNPNAICALSPSSENCFIAYPLPKPREDTGDRRPAHAPPLSNYVAPTSGEVLVFDTITLKAVNVIEAHRSPLCSISLSSDGTLLATASETGTIIRVFSVPRGQKLYQFRRGTYPSTIYSMSFNLGSTLLCVSSMSDTVHIFRLRG 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G577_ECTSI1.410e-5657.75Autophagy-related protein 18 n=2 Tax=Ectocarpus Ta... [more]
A0A835Z475_9STRA9.610e-5359.46Autophagy-related protein 18 (Fragment) n=1 Tax=Tr... [more]
G2RGZ1_THETT4.200e-4446.81Uncharacterized protein n=2 Tax=Thermothielavioide... [more]
A0A433PKP9_9FUNG7.180e-4442.55WD40-repeat-containing domain protein n=1 Tax=Endo... [more]
ATG18_SCLS19.890e-4446.32Autophagy-related protein 18 n=23 Tax=Sclerotiniac... [more]
W9YQU7_9EURO1.910e-4346.88Autophagy-like protein 18 n=1 Tax=Capronia epimyce... [more]
S8AK55_DACHA2.120e-4345.36Uncharacterized protein n=1 Tax=Dactylellina hapto... [more]
ATG18_PENRW2.960e-4342.55Autophagy-related protein 18 n=21 Tax=Penicillium ... [more]
A0A2T9Z789_9FUNG3.050e-4344.15Uncharacterized protein n=2 Tax=Smittium megazygos... [more]
A0A8K0TP23_9PEZI3.220e-4345.79Protein-vacuolar targeting protein Atg18 n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21519contigP-wetherbeei_contig21519:4..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G577
Preferred nameATG18
PFAMsWD40
Model size636
Max annot lvl2759|Eukaryota
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005829,GO:0005942,GO:0006464,GO:0006497,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016485,GO:0019538,GO:0019898,GO:0022411,GO:0022607,GO:0030242,GO:0031090,GO:0031410,GO:0031982,GO:0032182,GO:0032258,GO:0032266,GO:0032991,GO:0033036,GO:0033365,GO:0034045,GO:0034497,GO:0034613,GO:0034645,GO:0034727,GO:0035032,GO:0035091,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043130,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061695,GO:0061726,GO:0061919,GO:0070727,GO:0070772,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080025,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901981,GO:1902494,GO:1902936,GO:1903008,GO:1905037,GO:1990234
Exons2
Evalue2.31e-57
EggNOG OGsKOG2110@1|root,KOG2110@2759|Eukaryota
Ec32 ortholog descriptionAutophagy-related protein 18
Ec32 orthologEc-14_006510.1
Descriptionphosphatidylinositol-3,5-bisphosphate binding
Cds size636
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186227.9119086-CDS-P-wetherbeei_contig21519:3..3181683186227.9119086-CDS-P-wetherbeei_contig21519:3..318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21519 4..318 +
1683186227.9212205-CDS-P-wetherbeei_contig21519:840..11611683186227.9212205-CDS-P-wetherbeei_contig21519:840..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21519 841..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21519.1.1prot_P-wetherbeei_contig21519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21519 4..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21519.1.1

>prot_P-wetherbeei_contig21519.1.1 ID=prot_P-wetherbeei_contig21519.1.1|Name=mRNA_P-wetherbeei_contig21519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
TVCETNLVTAVLAVRLTRRRVVVCLERALYIFDISNMACLQTLETTPNPN
GIVALSSNEENCYLAFPNCPQAAAGSSKNAASAVGGAGGTGGQGEVMLYD
ANTLKLVNKVMASRNPVAALAFSRDGALLASASEQGTVVRVFSVPEAHCV
VTLRRGTSRAAVHSLAFNAAATRLAVSSSSGTVHVFRVLGRGGDGGSSGR
GGGPIGGGDGNG
back to top

mRNA from alignment at P-wetherbeei_contig21519:4..1161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21519.1.1 ID=mRNA_P-wetherbeei_contig21519.1.1|Name=mRNA_P-wetherbeei_contig21519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig21519:4..1161+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTGTGCGAGACGAACTTGGTGACGGCGGTGCTCGCCGTGCGCCTGAC CCGCCGCCGCGTCGTCGTCTGCCTCGAGCGGGCGCTCTACATCTTCGACA TTTCCAACATGGCTTGCCTGCAGACGCTGGAGACAACGCCGAACCCCAAC GGCATCGTCGCCCTCTCTTCCAATGAAGAGAACTGCTACTTGGCGTTTCC TAACTGCCCGCAAGCGGCGGCGGGAAGCAGCAAGAACGCCGCGAGCGCGG TGGGAGGCGCGGGCGGGACAGGCGGGCAGGGAGAGGTCATGCTCTACGAC GCGAATACGCTCAAGGTGAGAGAAAGAGTGCGTTGACTTGTGCGCCTCAG CTTGCTTTTCGTGTGTAAGTGTTGGATATGTTGGATATGTCATGGCTGTG CGAGCCGCCTTGACTTCGGGCAAATTTTGAGGCTTTTCGTTCCTCGCTCA ACGGAAAAAGGCGTGCATTATCTTCACCGAAATGGAGATGGAGATTTGTC AGAAGGACGAAAAGTGGCTGCGAATGGCATCGGCAGCAGGAGAAGAGGGA CTTGCAGTATGCGAGACTTGCAATCCTTAGGCTGCGCAAGTTTACGGTGC CTTCCTTGGAAGATTTTGGTGCTGGTTAGTCTACGGCCTCCTTCGCTTTA TCTTGCGGTATTTCTACCGTGCGCTTACAACTTTTAATCCCATTGGGCTT CTTTTCGGCTTTAAGCCAAGGCAATCCAAATTGGAGCCGCTTGCTCTTTT GAACCGATAACATCTGTCTGATCTGCGACATTCTTTTCCCTTTCGTTTTT TTCCACTTTGGGGGATCTTGCTTCTTTGGCTTATCAGCTCGTCAATAAGG TCATGGCCAGCCGCAATCCCGTGGCGGCGCTGGCTTTCAGCCGCGACGGC GCGCTGCTGGCGTCGGCATCGGAGCAGGGCACCGTCGTCCGCGTCTTCTC TGTGCCCGAGGCGCACTGCGTCGTCACGCTCCGCCGCGGCACCTCGCGCG CCGCCGTCCACTCGCTGGCCTTCAACGCCGCCGCTACACGCCTCGCCGTC TCCAGCTCTTCCGGCACGGTTCATGTCTTCCGAGTCCTCGGCAGAGGCGG CGACGGCGGCAGTAGCGGGCGCGGCGGCGGCCCGATCGGCGGCGGTGACG GTAACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21519:4..1161+

>mRNA_P-wetherbeei_contig21519.1.1 ID=mRNA_P-wetherbeei_contig21519.1.1|Name=mRNA_P-wetherbeei_contig21519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig21519:4..1161+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTGTGCGAGACGAACTTGGTGACGGCGGTGCTCGCCGTGCGCCTGAC
CCGCCGCCGCGTCGTCGTCTGCCTCGAGCGGGCGCTCTACATCTTCGACA
TTTCCAACATGGCTTGCCTGCAGACGCTGGAGACAACGCCGAACCCCAAC
GGCATCGTCGCCCTCTCTTCCAATGAAGAGAACTGCTACTTGGCGTTTCC
TAACTGCCCGCAAGCGGCGGCGGGAAGCAGCAAGAACGCCGCGAGCGCGG
TGGGAGGCGCGGGCGGGACAGGCGGGCAGGGAGAGGTCATGCTCTACGAC
GCGAATACGCTCAAGCTCGTCAATAAGGTCATGGCCAGCCGCAATCCCGT
GGCGGCGCTGGCTTTCAGCCGCGACGGCGCGCTGCTGGCGTCGGCATCGG
AGCAGGGCACCGTCGTCCGCGTCTTCTCTGTGCCCGAGGCGCACTGCGTC
GTCACGCTCCGCCGCGGCACCTCGCGCGCCGCCGTCCACTCGCTGGCCTT
CAACGCCGCCGCTACACGCCTCGCCGTCTCCAGCTCTTCCGGCACGGTTC
ATGTCTTCCGAGTCCTCGGCAGAGGCGGCGACGGCGGCAGTAGCGGGCGC
GGCGGCGGCCCGATCGGCGGCGGTGACGGTAACGGC
back to top