mRNA_P-wetherbeei_contig21462.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21462.2.1
Unique NamemRNA_P-wetherbeei_contig21462.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21462.2.1 vs. uniprot
Match: UPI0019CBEB1B (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019CBEB1B)

HSP 1 Score: 75.5 bits (184), Expect = 2.280e-15
Identity = 39/84 (46.43%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   37 GQSTFAG-YSDSASRLIARGKAAFGDAYTWA----GEASHSLPRSTRDLGLPDQKSLKAMIDDKPLIIGAVGLGIGVALGSMLP 273
            G+ + AG YSD+ASRL+++GK A G AY WA    G A  ++PR+ R +  PDQ++++ +I+++PL++GA+GLG+G  +G MLP
Sbjct:   45 GRGSAAGSYSDTASRLMSQGKQALGTAYGWASDNAGRAGRAIPRAARYV--PDQRTIQNLIEERPLVLGAIGLGLGAIIGMMLP 126
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BLAST of mRNA_P-wetherbeei_contig21462.2.1 vs. uniprot
Match: A0A537NQK7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NQK7_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 4.210e-6
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   64 DSASRLIARGKAAFGDAYTWAGEASHSLPRSTRDLGLPDQKSLKAMIDDKPLIIGAVGLGIGVALGSMLP 273
            D+A   + R +   G AY WA EA+         L +P +  +  + D  PL++GAVGLG+GVA+G++ P
Sbjct:   27 DNAGSALRRSRETIGRAYGWAQEAAEG------HLRMPRRSDISQLTDANPLLLGAVGLGLGVAIGTLFP 90
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BLAST of mRNA_P-wetherbeei_contig21462.2.1 vs. uniprot
Match: A0A6G6X2J9_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6X2J9_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 6.950e-6
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   64 DSASRLIARGKAAFGDAYTWAGEASHSLPRSTRDLGLPDQKSLKAMIDDKPLIIGAVGLGIGVALGSMLP 273
            D+A   + RG+A    AY WA EA  +   S R   LP +  +  + +  PL++GAVGLG+G+A+G++ P
Sbjct:   30 DNAGTALRRGRATLSRAYDWAHEAGSAHLGSLR---LPRRTDIGHLTEANPLLLGAVGLGLGMAIGTLFP 96
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BLAST of mRNA_P-wetherbeei_contig21462.2.1 vs. uniprot
Match: UPI0019079843 (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019079843)

HSP 1 Score: 50.1 bits (118), Expect = 1.420e-5
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   64 DSASRLIARGKAAFGDAYTWAGEASHSLPRSTRDLGLPDQKSLKAMIDDKPLIIGAVGLGIGVALGSMLP 273
            D+A   + RG+     AY WA EA ++   S R   +P +  +  + +  PL++GAVGLG+GVA+G++ P
Sbjct:   27 DNAGMALRRGRDTLSRAYDWAHEAGNTGLGSLR---MPRRADISHLAEANPLLLGAVGLGLGVAIGTLFP 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21462.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI0019CBEB1B2.280e-1546.43Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A537NQK7_9PROT4.210e-637.14Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6G6X2J9_9HYPH6.950e-638.57Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
UPI00190798431.420e-537.14hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21462contigP-wetherbeei_contig21462:457..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.4036112-CDS-P-wetherbeei_contig21462:456..7291683186226.4036112-CDS-P-wetherbeei_contig21462:456..729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21462 457..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21462.2.1prot_P-wetherbeei_contig21462.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21462 457..729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21462.2.1

>prot_P-wetherbeei_contig21462.2.1 ID=prot_P-wetherbeei_contig21462.2.1|Name=mRNA_P-wetherbeei_contig21462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
RTSRSATKRLAKGQSTFAGYSDSASRLIARGKAAFGDAYTWAGEASHSLP
RSTRDLGLPDQKSLKAMIDDKPLIIGAVGLGIGVALGSMLP
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mRNA from alignment at P-wetherbeei_contig21462:457..729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21462.2.1 ID=mRNA_P-wetherbeei_contig21462.2.1|Name=mRNA_P-wetherbeei_contig21462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig21462:457..729+ (Phaeothamnion wetherbeei SAG_119_79)
CGGACTTCCCGTTCCGCGACAAAGCGATTGGCAAAAGGGCAATCCACATT
TGCGGGCTATAGCGACTCGGCGTCACGCCTCATTGCCCGCGGCAAAGCTG
CGTTTGGTGATGCCTACACTTGGGCCGGTGAAGCGAGCCATTCATTGCCA
CGGAGCACCCGCGATCTGGGCCTGCCCGACCAAAAGTCATTGAAAGCCAT
GATCGATGACAAACCTTTGATTATTGGCGCTGTGGGCTTGGGCATCGGCG
TAGCACTTGGATCGATGCTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21462:457..729+

>mRNA_P-wetherbeei_contig21462.2.1 ID=mRNA_P-wetherbeei_contig21462.2.1|Name=mRNA_P-wetherbeei_contig21462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig21462:457..729+ (Phaeothamnion wetherbeei SAG_119_79)
CGGACTTCCCGTTCCGCGACAAAGCGATTGGCAAAAGGGCAATCCACATT
TGCGGGCTATAGCGACTCGGCGTCACGCCTCATTGCCCGCGGCAAAGCTG
CGTTTGGTGATGCCTACACTTGGGCCGGTGAAGCGAGCCATTCATTGCCA
CGGAGCACCCGCGATCTGGGCCTGCCCGACCAAAAGTCATTGAAAGCCAT
GATCGATGACAAACCTTTGATTATTGGCGCTGTGGGCTTGGGCATCGGCG
TAGCACTTGGATCGATGCTCCCC
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