mRNA_P-wetherbeei_contig21410.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21410.2.1
Unique NamemRNA_P-wetherbeei_contig21410.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F3YN33_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YN33_9PROT)

HSP 1 Score: 143 bits (360), Expect = 6.620e-41
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 MADDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            M+ D+F +AVADV+PLK                 Q  RDE AAL ES+E   + D+AL++GEEL YLRDG+S+QVLRRLRRGHWV+Q GLDLHG+NR +AA  VA F+   + RG RCVRIVHGKG GS NRE V
Sbjct:    1 MSSDEFREAVADVKPLKRSRRIALKGPAPAPVPEQRRRDEIAALAESLEGPTSVDDALDSGEELVYLRDGMSRQVLRRLRRGHWVIQDGLDLHGLNRDQAAVAVAAFLHQCAARGLRCVRIVHGKGLGSHNREPV 135          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A521VYM1_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VYM1_9PROT)

HSP 1 Score: 143 bits (361), Expect = 8.910e-41
Identity = 80/133 (60.15%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D+DF +AVADV PLK                VQ  RDERAAL ES+    + ++AL++GEELSYLRDGL +QVLRRLRRGHWVVQA LDLHGMNR  AA  VA F+   + RG RCVRIVHG+G GS+NRE V
Sbjct:   13 DEDFRQAVADVVPLKRERRHALKGPPPAPHAVQRRRDERAALHESLHAPFSIEDALDSGEELSYLRDGLPRQVLRRLRRGHWVVQASLDLHGMNRVVAAEAVAAFLRAGAARGARCVRIVHGRGLGSKNREPV 145          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F4BD61_9PROT (Smr domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BD61_9PROT)

HSP 1 Score: 142 bits (359), Expect = 1.640e-40
Identity = 79/133 (59.40%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D+DF +AVADV PLK                 Q  RDERAAL ES+    + ++AL++GEEL+YLRDGLS+QVLRRLRRGHWVVQA LDLHGMNR  AA  VA F+   + RG RCVRIVHG+G GS+NRE V
Sbjct:   23 DEDFRQAVADVVPLKRDRRHALKEPPPTPHAAQRRRDERAALHESLHAPFSIEDALDSGEELTYLRDGLSRQVLRRLRRGHWVVQANLDLHGMNRVVAAEAVAAFLRAGAARGARCVRIVHGRGLGSKNREPV 155          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F3Z252_9PROT (Smr domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3Z252_9PROT)

HSP 1 Score: 142 bits (357), Expect = 2.850e-40
Identity = 80/133 (60.15%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D +F  AV DV PL                 VQ  RDERAAL ES+   V+ D+AL++GEEL +LRDGL +QVLRRLRRGHWVVQA LDLHGMNR  AAA VA+F+  ++ RG RCVRIVHGKG GSRNRE V
Sbjct:   17 DPEFRTAVLDVAPLGGARRHALKRPAAPPVPVQTRRDERAALYESLHGPVSVDDALDSGEELVFLRDGLPRQVLRRLRRGHWVVQASLDLHGMNRVAAAAAVADFLRSSAARGARCVRIVHGKGLGSRNREPV 149          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F4F9L3_9PROT (Smr domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F9L3_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.770e-39
Identity = 82/133 (61.65%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D +F +AVADV PLK          XXXX  +Q  RDERAAL ES+   V+ D+AL++GEEL++LR+GLS+QVLRRLRRGHWVVQ GLDLHGMNR  AA  VA F+  ++  G RCVRIVHGKG GS+NRE V
Sbjct:    8 DAEFRQAVADVAPLKRQHRHALKAPXXXXHALQRRRDERAALHESLHGPVSLDDALDSGEELTFLREGLSRQVLRRLRRGHWVVQDGLDLHGMNRVAAAEAVAVFLRASAAHGLRCVRIVHGKGLGSKNREPV 140          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A521VG30_9PROT (DNA mismatch repair protein MutS n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VG30_9PROT)

HSP 1 Score: 138 bits (348), Expect = 7.570e-39
Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D+DF +AVADV PLK                 Q  RDERAAL ES+    + ++ALE+GEEL+YLR+GLS+Q+LRRLRRGHWVVQ+ LDLHGMNR  AA  V+ F+  +  RG RCVRIVHGKG GS+NRE V
Sbjct:   23 DEDFRQAVADVVPLKRERRHALKGPPPAPHAAQRRRDERAALHESLYAPFSIEDALESGEELTYLREGLSRQLLRRLRRGHWVVQSSLDLHGMNRVTAADAVSVFLRASKARGLRCVRIVHGKGLGSKNREPV 155          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F4B324_9PROT (Smr domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B324_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.130e-38
Identity = 76/133 (57.14%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D DF +AVADV PL+                VQ  RDE+AAL ES+   ++ D++L++GEEL+YLRDG+ + VLRRLRRGHWVVQA LDLHGMNR  AA  VA F+   + RG RCVRIVHGKG+GS NRE V
Sbjct:   17 DADFRQAVADVAPLEHRDRHSLKGPPPAPHAVQRRRDEQAALQESLHGPISIDDSLDSGEELTYLRDGMPRTVLRRLRRGHWVVQASLDLHGMNRFAAAEAVAAFLRANAARGLRCVRIVHGKGHGSHNREPV 149          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A521YLT8_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YLT8_9PROT)

HSP 1 Score: 136 bits (343), Expect = 2.800e-38
Identity = 74/133 (55.64%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            D++F +A ADV+PL                  Q  RDERAAL ES+E  ++ D+A+E+GEEL +LR+GLS+Q+LR+LRRGHWVV+  LDLHGMNR +AA  VA F+   + RG RCVRIVHGKG GSRNRE V
Sbjct:    7 DEEFRRATADVEPLTPQRRMLLRRTPPAPLPEQKRRDERAALAESLEGPLSIDDAIESGEELVFLREGLSRQLLRKLRRGHWVVEDDLDLHGMNRVQAAESVAAFLRGCTRRGLRCVRIVHGKGLGSRNREPV 139          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F4FJ27_9PROT (Smr domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FJ27_9PROT)

HSP 1 Score: 133 bits (335), Expect = 4.690e-37
Identity = 71/133 (53.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    7 DDDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            +++F +A+ADV+PL                  Q  RDERAAL+ES++  ++ D+A+E+GEEL +LR+GLS+Q+LR+LR GHWVV+  LDLHGMNR +AA  VA F+   + RG RCVRIVHGKG GSRNRE V
Sbjct:    8 EEEFRRAIADVEPLSPPRRMPLPRTRPAPVPEQKHRDERAALVESLQGPLSIDDAIESGEELVFLREGLSRQLLRKLRGGHWVVEDNLDLHGMNRVQAAESVAIFLRGCTRRGLRCVRIVHGKGLGSRNREPV 140          
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Match: A0A1F4EXS8_9PROT (Smr domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EXS8_9PROT)

HSP 1 Score: 131 bits (330), Expect = 2.600e-36
Identity = 77/132 (58.33%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   10 DDFAKAVADVQPLKXXXXXXXXXXXXXXXXVQMLRDERAALIESIERDVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEAAAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV 405
            +DF +AV DV+PL                  Q   DERAAL ES+    + D+ALETGEEL YLRDG+S+QVLR+LRRG WVVQ   DLHGMNR EAA  VAEF+  ++ RG RCVRIVHGKG GSRNRE V
Sbjct:    8 EDFRRAVGDVEPLAGARRREPRRAKPEPAPRQSRADERAALAESLAA-WSMDDALETGEELVYLRDGVSRQVLRKLRRGQWVVQESRDLHGMNRLEAAGSVAEFLRDSAKRGLRCVRIVHGKGRGSRNREPV 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21410.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YN33_9PROT6.620e-4157.78DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A521VYM1_9PROT8.910e-4160.15DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A1F4BD61_9PROT1.640e-4059.40Smr domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F3Z252_9PROT2.850e-4060.15Smr domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4F9L3_9PROT1.770e-3961.65Smr domain-containing protein n=2 Tax=unclassified... [more]
A0A521VG30_9PROT7.570e-3957.89DNA mismatch repair protein MutS n=2 Tax=Betaprote... [more]
A0A1F4B324_9PROT1.130e-3857.14Smr domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A521YLT8_9PROT2.800e-3855.64DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A1F4FJ27_9PROT4.690e-3753.38Smr domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4EXS8_9PROT2.600e-3658.33Smr domain-containing protein n=1 Tax=Betaproteoba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21410contigP-wetherbeei_contig21410:764..1168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1112274.KI911560_gene119
PFAMsSmr
Model size405
Max annot lvl206350|Nitrosomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.8e-31
EggNOG OGsCOG2840@1|root,COG2840@2|Bacteria,1RH34@1224|Proteobacteria,2VQ2S@28216|Betaproteobacteria,2KMB7@206350|Nitrosomonadales
DescriptionSmall MutS-related domain
Cds size405
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.797206-CDS-P-wetherbeei_contig21410:763..11681683186224.797206-CDS-P-wetherbeei_contig21410:763..1168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21410 764..1168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21410.2.1prot_P-wetherbeei_contig21410.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21410 764..1168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21410.2.1

>prot_P-wetherbeei_contig21410.2.1 ID=prot_P-wetherbeei_contig21410.2.1|Name=mRNA_P-wetherbeei_contig21410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MADDDFAKAVADVQPLKPARRAAPARPPAPPVPVQMLRDERAALIESIER
DVTPDEALETGEELSYLRDGLSKQVLRRLRRGHWVVQAGLDLHGMNRHEA
AAKVAEFVALASHRGQRCVRIVHGKGYGSRNRETV
back to top

mRNA from alignment at P-wetherbeei_contig21410:764..1168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21410.2.1 ID=mRNA_P-wetherbeei_contig21410.2.1|Name=mRNA_P-wetherbeei_contig21410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig21410:764..1168+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGACGACTTCGCCAAGGCGGTCGCCGACGTCCAGCCGCTGAA GCCGGCGCGCCGCGCCGCGCCCGCCCGTCCCCCGGCACCGCCGGTGCCGG TGCAGATGCTGCGCGACGAGCGCGCGGCGCTCATCGAGAGCATCGAACGC GACGTCACGCCCGACGAGGCCCTCGAAACCGGCGAGGAACTCTCCTACCT GCGCGACGGGCTCTCGAAGCAGGTGCTGCGGCGGCTGCGCCGCGGGCATT GGGTGGTGCAGGCCGGCCTCGACCTGCACGGAATGAACCGGCACGAGGCG GCCGCGAAAGTGGCGGAATTCGTGGCGCTCGCCTCGCACCGCGGGCAGCG GTGTGTCCGGATCGTGCACGGCAAGGGGTACGGCTCGAGGAACCGCGAGA CGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21410:764..1168+

>mRNA_P-wetherbeei_contig21410.2.1 ID=mRNA_P-wetherbeei_contig21410.2.1|Name=mRNA_P-wetherbeei_contig21410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig21410:764..1168+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGACGACTTCGCCAAGGCGGTCGCCGACGTCCAGCCGCTGAA
GCCGGCGCGCCGCGCCGCGCCCGCCCGTCCCCCGGCACCGCCGGTGCCGG
TGCAGATGCTGCGCGACGAGCGCGCGGCGCTCATCGAGAGCATCGAACGC
GACGTCACGCCCGACGAGGCCCTCGAAACCGGCGAGGAACTCTCCTACCT
GCGCGACGGGCTCTCGAAGCAGGTGCTGCGGCGGCTGCGCCGCGGGCATT
GGGTGGTGCAGGCCGGCCTCGACCTGCACGGAATGAACCGGCACGAGGCG
GCCGCGAAAGTGGCGGAATTCGTGGCGCTCGCCTCGCACCGCGGGCAGCG
GTGTGTCCGGATCGTGCACGGCAAGGGGTACGGCTCGAGGAACCGCGAGA
CGGTG
back to top