mRNA_P-wetherbeei_contig21408.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21408.1.1
Unique NamemRNA_P-wetherbeei_contig21408.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: UPI001903511A (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001903511A)

HSP 1 Score: 369 bits (947), Expect = 2.920e-122
Identity = 207/396 (52.27%), Postives = 271/396 (68.43%), Query Frame = 1
Query:    4 LPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPA------LKVLNKSDLPGDAQ---GIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            LP PR+A  R  R P +RE +D GL++  PGP S TGEDVAEFH+HGS AV+ AM +V   + G+RLAEPGEFT+RAF NDRMDLV AEG+ DL++ARTE QR+ A+HH LG AS   EGWR ++I+ L  +EAA+DF +E  VA A + D+R +  +L++R+  A AEADRA +LR G+KVV AG+PNVGKS+LLN +A REAAIVS+ PGTTRDVIEV +   G+PVILTDTAGLR    DEIE IG+ R   E A+ADIVVW+++ +     + +  PA      L + NKSDL G++    G   ++SA+TGEG+A   A LE+ V    +  E A +IR RH+      +  L  +    A H+EL AE LR A + +GR+TGR+DVED+L
Sbjct:   25 LPAPRKAVRRTFRHPDTREALDDGLLVTFPGPHSFTGEDVAEFHLHGSLAVVRAMLDVLSGMAGLRLAEPGEFTKRAFRNDRMDLVAAEGVGDLIRARTERQRKQALHHALGGASQVIEGWRRDLIATLGRVEAAVDFADEADVAQATVEDVRRRLDDLISRMRTALAEADRAASLRDGLKVVLAGSPNVGKSSLLNRLAQREAAIVSAIPGTTRDVIEVTMEFSGVPVILTDTAGLRPETEDEIERIGMDRTSRELASADIVVWISAPE-----DRSGPPAELDSETLWIENKSDLAGNSPEGTGAQYRISAKTGEGMAGFFAALEERVLRMAAHAESAVLIRSRHKQISSSCVENLLRASAQSADHLELMAESLRAAAYDMGRLTGRIDVEDIL 415          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A6G6WS80_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WS80_9HYPH)

HSP 1 Score: 358 bits (920), Expect = 5.510e-118
Identity = 206/396 (52.02%), Postives = 268/396 (67.68%), Query Frame = 1
Query:    4 LPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAE----DIENAVVPALKVLNKSDLPGDAQGI-----HLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            LP PR+A+ R  R PQ+++++D GL+L  PGP S TGEDVAEFH+HGS AV+ A+ E    + G+RLAEPGEFTRRAF N RMDLV AEG+ DL++ARTE QR+ A+HH LG AS   E WR ++I++L  +EAA+DF +E  VA A +AD+R +  +L+ R+  A AEADRA ALR G+KVV AG PNVGKS+LLN +A REAAIVS+ PGTTRDVIEV +   G+PVILTDTAGLRA   DEIE IG+ R   E A ADI+VW++  D       D+++     L + NK+DL   A GI       ++SA+TG G+AE  A LE  V    +  + A +IR RH+      +  L  +    A H+EL AE LR A + +GR+TGR+DVED+L
Sbjct:   40 LPAPRQAARRAFRHPQTKDILDDGLLLVFPGPHSFTGEDVAEFHLHGSLAVVRAVLEALGGMAGLRLAEPGEFTRRAFRNGRMDLVAAEGIGDLIRARTERQRKQALHHALGGASQVIETWRRDLIAILGRVEAAVDFSDEADVARATVADVRRRLDDLIGRMRSALAEADRAQALRDGLKVVLAGPPNVGKSSLLNRLAQREAAIVSAIPGTTRDVIEVAMEFSGVPVILTDTAGLRASTEDEIERIGMDRTGRELAGADIIVWMSVPDSPSGPPPDLDSET---LWIENKTDL---AAGIPKSQAQYRISAKTGAGMAEFFAALEDRVLGMAAHADSAVLIRSRHKQISTSCVENLLRASAQSADHLELMAEALRAAAYDMGRLTGRIDVEDVL 429          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A537P952_9PROT (tRNA modification GTPase MnmE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P952_9PROT)

HSP 1 Score: 353 bits (907), Expect = 5.060e-116
Identity = 204/394 (51.78%), Postives = 262/394 (66.50%), Query Frame = 1
Query:    4 LPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPALK-----VLNKSDL-PGDAQ-GIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            LP PR A+ R  R P ++ V+D G++L  PGP S TGEDV EFH+HGS AVI AM +    + G+RLAEPGEFTRRAF N RMDL+ AEGL DL+QARTE QR+ A+HH LG AS   EGWR +++S+L  +EAA+DF +E  VA   + ++R +  +L  R+  A AEA+RA +LR GVK+V AG PNVGKS+LLNL+A R+AAIVS+ PGTTRDVIEV +   G+PVILTDTAGLR    DEIE IG+ R   E  AAD+V+WV+    A    +  +P L      + NKSDL P D   G+  +VSARTG G+AE    LE+ V    +  E A++IR RH+   +  +  L  +    A H EL AE LR A   +GR+TGR+DVED+L
Sbjct:   40 LPAPRHAARRVFRHPLTQGVLDDGVLLLFPGPKSYTGEDVVEFHLHGSLAVIRAMLDALGGMAGLRLAEPGEFTRRAFRNGRMDLMAAEGLGDLIQARTERQRQQALHHALGGASQVIEGWRRDLVSILGRVEAAVDFADEADVAEQTVDEVRRRLDDLTVRMRGALAEANRAASLREGVKIVLAGPPNVGKSSLLNLLAKRDAAIVSAIPGTTRDVIEVMMEFSGVPVILTDTAGLRGATEDEIERIGMDRTGRELQAADVVIWVS----APGSPSGPLPELDSETLWIENKSDLDPTDRSLGMAHRVSARTGAGMAEFFTALEERVLRHAAHAESATLIRSRHKQITQSCVENLLRASAVSADHPELMAEALRAAAHDVGRLTGRIDVEDIL 429          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: UPI0018C7906A (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C7906A)

HSP 1 Score: 348 bits (894), Expect = 4.780e-114
Identity = 200/389 (51.41%), Postives = 261/389 (67.10%), Query Frame = 1
Query:    4 LPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPALKVLNKSDLPG--DAQGIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            LP PR AS+R+L+  +  +VID+ +VLW  GP SATGED+AE HVHG+ A+IE +F    +V G+RLA+ GEF+RRAF ND++DLVE EGLADLL A  EAQRR+AM   LG AS  YEGWR ++I  LA  EAAIDFVEED VA  A    +P    LVA L  A +   +  ALRSG+KVV AGAPNVGKS+ LN +A REAAIVS   GTTRD++E  ++  G+P+ LTDTAG R+   D IE +GI+RA +  + ADI++WV++ D+ +  ++   P +++LNK+DLP         L VS RTG G+ EL   L   + +R + +E A V+R RH  AV +SIR LN  L   +   EL AE LR+A  ++G +TG VDVEDLL
Sbjct:   43 LPQPRVASVRKLKA-RDGQVIDEAMVLWFSGPASATGEDMAELHVHGAPAIIEFIFSELSNVYGLRLADRGEFSRRAFHNDKLDLVEIEGLADLLAATGEAQRRLAMRQFLGEASGAYEGWRRQVIEALALHEAAIDFVEEDDVADRARDLAQPVIKRLVAELEAALSTFSQNAALRSGLKVVIAGAPNVGKSSFLNALARREAAIVSDIAGTTRDIVEAQVMFEGLPLTLTDTAGFRSATDDMIEKMGIERAAAAVSDADILIWVSATDITDSSDSPRTPDIRILNKADLPSIHTRNDAALPVSTRTGAGLDELRLALSSEIKKRMANVEHAVVVRQRHAGAVSDSIRLLNKVLDEPSRPHELIAEDLRKAARALGSITGHVDVEDLL 430          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A3N5HGU3_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5HGU3_9HYPH)

HSP 1 Score: 337 bits (863), Expect = 2.270e-109
Identity = 198/390 (50.77%), Postives = 255/390 (65.38%), Query Frame = 1
Query:    7 PLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDV--AEDIENAVVPALKVLNKSDL-PGDAQGIHL-KVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            P PRR ++R LR P   E ID+  V+W+P P +ATGED+AEFH+HGS AV   +F V     GVR+AEPGEFTRR F+N ++DLVEAEGL+DLL ARTEAQRR AMH  LG +S+  E WR  +I+ LA ++A ++F EE  VA  A    R     L+  + RA A A RA +LR G++VVFAGAPN GKS+LLN +A R+ AIVS   GTTRD IEV + L G+PV+LTDTAGLR G+ D+IE  G+ R R  A  AD+VVW+ S DV  ++ +   V P + V  KSDL PG   G    ++S  +GEG+   + +L   V  R    E A ++R R   AVEESIRFLND+L    G +EL +  LR A  ++ R+TGR+DVED L
Sbjct:   41 PPPRRFAVRTLRSPDGGEAIDKAGVIWLPAPATATGEDMAEFHIHGSEAVASHLFRVLSGFEGVRVAEPGEFTRRGFINGKLDLVEAEGLSDLLAARTEAQRRQAMHQFLGGSSAIIETWRNSLIASLATVDAVVEFSEEGDVAGVADQAWRNDAQALIDHMQRAVARAGRAESLRRGLRVVFAGAPNTGKSSLLNALAQRDVAIVSPLAGTTRDSIEVLLDLDGVPVVLTDTAGLRDGSVDDIERQGMARTRRFAGEADLVVWLWSRDVVGSDVVAEGVRPDMVVETKSDLTPGTTDGRESNRISTLSGEGMVAFVDRLSDFVKARVGLGEAAVIVRERQIQAVEESIRFLNDALRQPTGALELVSADLRGAATALARLTGRIDVEDWL 430          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A2W2APU5_9HYPH (tRNA modification GTPase MnmE n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2APU5_9HYPH)

HSP 1 Score: 327 bits (837), Expect = 2.060e-105
Identity = 191/393 (48.60%), Postives = 251/393 (63.87%), Query Frame = 1
Query:    7 PLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPALKVLNKSDLPGD-------AQGIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            P  R  ++R +R P + E +D+G+VLW P P S TGED AE H+HGSAAV+ A+ +      G+R AE GEFTRRAF+N +MDLVEAEGLADLLQART  QRR A   M G ASS ++ WR +++ + A +EA +DF +E GVA  A + I  +   L   +S A  ++  A  +R GV+VV AG PN GKS+LLN +A REAAIVS  PGTTRD IEV + + GIPV LTDTAGLR GA D +E  GI+R+R+  A ADIVVWV S DV        VP L V NK+DL          +    L+VS  TGEGI+ L+ +L  ++   +  +E + ++  R   AV+ SIR LND+L   A H+E+ AE +R +   IGR+TGR+ VE+ L
Sbjct:   41 PAARVVALRTIRDPVTGEALDRGMVLWSPAPRSFTGEDCAELHLHGSAAVVGAVLKALNGQPGLRPAEAGEFTRRAFLNGKMDLVEAEGLADLLQARTAGQRRQAFRQMSGMASSVFDAWRRQLLLIRADIEAVVDFADEPGVAEEASSGIDARISILATEMSSALQKSAAAEVVRDGVRVVLAGRPNTGKSSLLNALARREAAIVSEIPGTTRDAIEVSLDINGIPVNLTDTAGLRDGAADVVEEEGIRRSRTHIAEADIVVWVWSSDVPGSRTPDGVPGLVVQNKADLDSGLFRNDPMSDDRPLRVSTLTGEGISGLLQKLTAVLQHHYGDVESSLLVSARQTAAVQRSIRLLNDALAVPAEHLEIKAEQIRSSSEEIGRLTGRIGVEEWL 433          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A7W6CXT1_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6CXT1_9HYPH)

HSP 1 Score: 320 bits (821), Expect = 6.750e-103
Identity = 199/395 (50.38%), Postives = 250/395 (63.29%), Query Frame = 1
Query:    7 PLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPAL-------KVLNKSDLPGDAQGI--HLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            P PRRAS R  R P   EVID+GL LW+PGP SATGED+AE H+HG  AV+ A  E   SV GVR+AEPGEFTRRAF+  RMDL E EGLADL++A TEAQRR A+    G  S++ E WR  +I  +A LEAAIDF +ED V A      + +   L   LS A A+  RA  LR G +V   G PN GKS+LLNL+A REAAIV+  PGTTRDVIE  + LGG+PVI+ DTAGLR  A D  E  G++R+  +A AAD+V+W+      ED  +   P++       +V NK+DL G  +G   HL +S R+G G+ ELIA L +      SG E   + R RHRDA+  ++  L + L H     ELAAE LRRA   +GR+TG+V VED+L
Sbjct:   58 PAPRRASYRTFRSPTGGEVIDRGLALWLPGPGSATGEDIAELHIHGGRAVVAAALEAALSVPGVRMAEPGEFTRRAFLAGRMDLAEVEGLADLIEAETEAQRRQALRQSSGELSARVEAWRERLIGAMALLEAAIDFSDEDDVPAGLRERAQEEIGRLAQDLSAALADT-RAERLRDGFRVALVGPPNAGKSSLLNLLARREAAIVADAPGTTRDVIETHLDLGGVPVIVADTAGLRETA-DAAEQEGVRRSTLQARAADLVIWL------EDAADPTQPSIEASSALWRVANKADLAGAKKGEADHL-ISVRSGLGVEELIAALTEAARAGASG-EAIGLTRARHRDALSAAVAALRECLDHPLPE-ELAAELLRRAAGELGRITGKVGVEDVL 441          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: UPI0010C9952E (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C9952E)

HSP 1 Score: 312 bits (799), Expect = 9.280e-100
Identity = 188/390 (48.21%), Postives = 247/390 (63.33%), Query Frame = 1
Query:    4 LPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSVDVAEDIENAVVPAL-KVLNKSDL-PGDAQGIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVI-RIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            LP PRRA +R L  P    VID+ +V+W+PGP + +GED+ E HVHG  AV+ A+F   R   G+R AE GEFTRRA  N RM LV+AEGLADL+ A TEAQR+ A+    G     YEGWR ++++LLAHLEA IDFV+E+GV     AD+R ++  L   +S    +      LR G+ VV AG PN GKS+LLN +A RE AIVS RPGTTRD+IEV + LGG PV+L DTAGLR  A DEIE  G++RAR  A  A +V+WVTS D     E     AL +V+NKSDL PG+     + +SA+TG G+  L+  L   V   F+  ++  ++ R RHR A+ +    L  +    A   EL AE LRRA + +G++ GR+D+ED+L
Sbjct:   41 LPRPRRAVLRALNDPDGGGVIDRAMVIWLPGPHTFSGEDMLELHVHGGPAVVAALFRALRHFPGLRPAERGEFTRRAVENGRMGLVDAEGLADLIAADTEAQRKQALRQASGGLDEIYEGWRNQLLALLAHLEAHIDFVDEEGVPLEVAADVRARSSALAREISSFLTDNRVGERLREGLTVVIAGPPNAGKSSLLNRLARREVAIVSDRPGTTRDLIEVHLDLGGYPVVLVDTAGLREAAADEIEDEGMRRARKRAGEAALVIWVTSPDADGRPEAPFDSALLRVVNKSDLIPGENVLDAISISAKTGSGLDALVEALTARVQALFAETQERPLLTRERHRVALSKCCDHLLAAAATPAD--ELVAEDLRRAAWYLGKLVGRIDIEDIL 428          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: A0A7S8C4Q2_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C4Q2_9HYPH)

HSP 1 Score: 310 bits (795), Expect = 6.010e-99
Identity = 190/402 (47.26%), Postives = 244/402 (60.70%), Query Frame = 1
Query:    7 PLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSV-DVAEDIENAVVPA------LKVLNKSDLPGDAQGI---------HLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            P  RR S+R + RP S E +D+GLVLW+PGP S TGED+AEFHVHG  AVI  +      V G+R AE GEFTRRAF N R+DL E EG+AD++ A TEAQRR A+  M G   + Y+ WR ++++++A LEA IDF +E  V A   A I  +  +L   +     +  R   LR G++VV AG PNVGKS+LLN +A R+AAIV+ R GTTRDVIEV + L G PVIL DTAGLR   GDEIE  G+ R R+    AD+VVWVTS  D+ E  + A+  A      L V+NKSDL  D   +          + +SA TG G+  LIA+L +         E   + R RHR A+ E +  L+  +       EL AE LRRA  ++GR+ GRVDVEDLL
Sbjct:   43 PAARRVSLRTIVRPGSGEPLDRGLVLWLPGPESFTGEDMAEFHVHGGPAVISGVLGAIGEVGGMRPAEAGEFTRRAFENGRLDLTEVEGIADMIDAETEAQRRQALRQMEGALGTLYDRWRADLVAMMAELEAVIDFPDEGDVPAELAAGIGRRAADLADEMRAHMDDGRRGERLRDGIQVVIAGRPNVGKSSLLNQLARRDAAIVAERAGTTRDVIEVHLDLAGYPVILVDTAGLREETGDEIEREGMARTRNRLDTADLVVWVTSAPDMEEGSDGALSDAPVDSETLWVVNKSDLAEDLSALLKSCPGMTRAIPISALTGAGLDGLIAELARRAQALAGEGEHVVMTRARHRAALGECLEHLDRVVSGTISEPELVAEDLRRAAHALGRIVGRVDVEDLL 444          
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Match: UPI0015E73499 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI0015E73499)

HSP 1 Score: 310 bits (793), Expect = 6.980e-99
Identity = 178/391 (45.52%), Postives = 249/391 (63.68%), Query Frame = 1
Query:    1 SLPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSAAVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQARTEAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAALADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLVAAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIGIQRARSEAAAADIVVWVTSV---DVAEDIENAVVPALKVLNKSDLPGDAQGIHLKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFLNDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL 1164
            S PLPR  + R +R P++ E+ID  +VLW     S TGEDV EF VHGS AVI AMF   + + G RLAEPGEF RRAF N ++DL + EGLADL+ A TE+QRR A+    G  S  YE WR+ +I +   +EAAIDF +E  VAA+A++D R +   L   ++R   +  R   LR G +V   GAPN GKS+LLN +A R+AAIVS+  GTTRDVIEV + LGG+PVI++DTAG+R  A D IE  GI+R+ + A  AD+VVW++     ++ + I      +L + +K+DL  ++ G  L+VSA TGEG+  LI ++ +          + ++ R+RHR  +E ++  +   L  +   +EL AE +RRA  ++GR+TGRVDVED+L
Sbjct:   39 SPPLPRYGAFRTIRHPRTHEIIDGAVVLWFEARSSETGEDVVEFQVHGSRAVITAMFAALKEIDGCRLAEPGEFARRAFENGKLDLAQVEGLADLIDAETESQRRQAVAQTAGALSKLYESWRSRLIEIAGLVEAAIDFSDEGDVAASAVSDARQRASVLSDEIARHLDDGHRGEILREGFRVALLGAPNAGKSSLLNALARRDAAIVSAEAGTTRDVIEVRLDLGGLPVIVSDTAGIREAASD-IEREGIRRSLAVAREADLVVWLSETCDSNIPQGISRET--SLAICSKADLARESNGSDLRVSALTGEGLDRLIGEISRRAHTAVGASSEPALTRVRHRQNLEAALESIRAFLGGNVEAVELRAEDVRRASHALGRITGRVDVEDVL 426          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001903511A2.920e-12252.27tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A6G6WS80_9HYPH5.510e-11852.02tRNA modification GTPase MnmE n=1 Tax=Nordella sp.... [more]
A0A537P952_9PROT5.060e-11651.78tRNA modification GTPase MnmE n=1 Tax=Alphaproteob... [more]
UPI0018C7906A4.780e-11451.41tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A3N5HGU3_9HYPH2.270e-10950.77tRNA modification GTPase MnmE n=1 Tax=Hyphomicrobi... [more]
A0A2W2APU5_9HYPH2.060e-10548.60tRNA modification GTPase MnmE n=2 Tax=Aestuariivir... [more]
A0A7W6CXT1_9HYPH6.750e-10350.38tRNA modification GTPase MnmE n=1 Tax=Hansschlegel... [more]
UPI0010C9952E9.280e-10048.21tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A7S8C4Q2_9HYPH6.010e-9947.26tRNA modification GTPase MnmE n=1 Tax=Kaustia mang... [more]
UPI0015E734996.980e-9945.52tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21408contigP-wetherbeei_contig21408:6..1169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1125973.JNLC01000011_gene433
Preferred namemnmE
PFAMsMMR_HSR1,MnmE_helical,TrmE_N
Model size1164
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650
KEGG ReactionR08701
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.43e-98
EggNOG OGsCOG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2TQZW@28211|Alphaproteobacteria,3JV1K@41294|Bradyrhizobiaceae
DescriptionExhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Cds size1164
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.5149035-CDS-P-wetherbeei_contig21408:5..11691683186224.5149035-CDS-P-wetherbeei_contig21408:5..1169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21408 6..1169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21408.1.1prot_P-wetherbeei_contig21408.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21408 6..1169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21408.1.1

>prot_P-wetherbeei_contig21408.1.1 ID=prot_P-wetherbeei_contig21408.1.1|Name=mRNA_P-wetherbeei_contig21408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=388bp
SLPLPRRASIRQLRRPQSREVIDQGLVLWMPGPLSATGEDVAEFHVHGSA
AVIEAMFEVFRSVVGVRLAEPGEFTRRAFVNDRMDLVEAEGLADLLQART
EAQRRMAMHHMLGHASSQYEGWRTEMISLLAHLEAAIDFVEEDGVAAAAL
ADIRPKTLNLVARLSRATAEADRAGALRSGVKVVFAGAPNVGKSTLLNLV
AAREAAIVSSRPGTTRDVIEVPIVLGGIPVILTDTAGLRAGAGDEIEVIG
IQRARSEAAAADIVVWVTSVDVAEDIENAVVPALKVLNKSDLPGDAQGIH
LKVSARTGEGIAELIAQLEKLVAERFSGMEQASVIRIRHRDAVEESIRFL
NDSLLHDAGHIELAAECLRRACFSIGRVTGRVDVEDLL
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mRNA from alignment at P-wetherbeei_contig21408:6..1169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21408.1.1 ID=mRNA_P-wetherbeei_contig21408.1.1|Name=mRNA_P-wetherbeei_contig21408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-wetherbeei_contig21408:6..1169- (Phaeothamnion wetherbeei SAG_119_79)
TCCCTACCTTTACCTCGACGGGCCAGCATACGGCAACTGCGGCGCCCTCA ATCCCGGGAGGTCATCGACCAAGGCCTCGTCCTTTGGATGCCCGGCCCGT TGAGCGCTACCGGTGAAGACGTGGCTGAATTCCATGTTCACGGTAGTGCC GCGGTGATCGAGGCGATGTTTGAAGTCTTCCGTTCGGTCGTCGGCGTGAG ATTGGCAGAGCCCGGCGAATTTACCCGTAGGGCCTTTGTCAATGACCGGA TGGATCTGGTGGAGGCGGAGGGACTTGCCGATCTGCTGCAGGCCCGCACC GAGGCGCAGCGGCGTATGGCCATGCACCACATGCTCGGTCATGCCAGTTC GCAGTATGAGGGCTGGCGGACGGAAATGATTTCGCTGTTGGCGCACCTTG AAGCAGCAATTGATTTTGTCGAAGAGGATGGCGTTGCCGCTGCAGCGCTG GCTGATATCAGGCCCAAGACTCTTAACCTGGTAGCGCGTCTCAGTAGGGC CACGGCGGAAGCAGATCGCGCAGGCGCGCTTCGGTCGGGCGTGAAAGTTG TTTTTGCCGGCGCGCCGAATGTCGGCAAATCGACCCTGTTGAATTTGGTT GCGGCACGGGAGGCGGCAATCGTTTCGTCGCGTCCCGGCACTACCCGGGA TGTCATCGAGGTCCCCATCGTCCTTGGCGGCATTCCCGTCATCCTGACAG ACACGGCGGGCCTTCGCGCCGGGGCCGGTGATGAGATCGAAGTCATCGGC ATACAGCGCGCCAGGTCGGAAGCCGCCGCTGCTGATATTGTTGTCTGGGT GACGTCGGTTGACGTGGCGGAGGACATTGAAAACGCGGTAGTGCCGGCAC TCAAGGTTTTGAACAAGTCGGACCTACCGGGTGATGCTCAGGGAATACAT TTGAAAGTTTCCGCCAGGACCGGCGAAGGCATCGCGGAGCTGATTGCCCA ACTTGAAAAACTGGTGGCGGAGCGCTTTAGCGGCATGGAGCAGGCCTCGG TCATCCGTATACGCCATAGGGATGCGGTTGAGGAATCGATTCGGTTCCTC AACGATTCTCTTCTGCATGATGCGGGGCATATCGAGCTCGCTGCGGAATG CTTGCGCAGGGCCTGTTTCAGCATCGGCCGGGTCACGGGCCGGGTCGATG TGGAGGATCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21408:6..1169-

>mRNA_P-wetherbeei_contig21408.1.1 ID=mRNA_P-wetherbeei_contig21408.1.1|Name=mRNA_P-wetherbeei_contig21408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1164bp|location=Sequence derived from alignment at P-wetherbeei_contig21408:6..1169- (Phaeothamnion wetherbeei SAG_119_79)
TCCCTACCTTTACCTCGACGGGCCAGCATACGGCAACTGCGGCGCCCTCA
ATCCCGGGAGGTCATCGACCAAGGCCTCGTCCTTTGGATGCCCGGCCCGT
TGAGCGCTACCGGTGAAGACGTGGCTGAATTCCATGTTCACGGTAGTGCC
GCGGTGATCGAGGCGATGTTTGAAGTCTTCCGTTCGGTCGTCGGCGTGAG
ATTGGCAGAGCCCGGCGAATTTACCCGTAGGGCCTTTGTCAATGACCGGA
TGGATCTGGTGGAGGCGGAGGGACTTGCCGATCTGCTGCAGGCCCGCACC
GAGGCGCAGCGGCGTATGGCCATGCACCACATGCTCGGTCATGCCAGTTC
GCAGTATGAGGGCTGGCGGACGGAAATGATTTCGCTGTTGGCGCACCTTG
AAGCAGCAATTGATTTTGTCGAAGAGGATGGCGTTGCCGCTGCAGCGCTG
GCTGATATCAGGCCCAAGACTCTTAACCTGGTAGCGCGTCTCAGTAGGGC
CACGGCGGAAGCAGATCGCGCAGGCGCGCTTCGGTCGGGCGTGAAAGTTG
TTTTTGCCGGCGCGCCGAATGTCGGCAAATCGACCCTGTTGAATTTGGTT
GCGGCACGGGAGGCGGCAATCGTTTCGTCGCGTCCCGGCACTACCCGGGA
TGTCATCGAGGTCCCCATCGTCCTTGGCGGCATTCCCGTCATCCTGACAG
ACACGGCGGGCCTTCGCGCCGGGGCCGGTGATGAGATCGAAGTCATCGGC
ATACAGCGCGCCAGGTCGGAAGCCGCCGCTGCTGATATTGTTGTCTGGGT
GACGTCGGTTGACGTGGCGGAGGACATTGAAAACGCGGTAGTGCCGGCAC
TCAAGGTTTTGAACAAGTCGGACCTACCGGGTGATGCTCAGGGAATACAT
TTGAAAGTTTCCGCCAGGACCGGCGAAGGCATCGCGGAGCTGATTGCCCA
ACTTGAAAAACTGGTGGCGGAGCGCTTTAGCGGCATGGAGCAGGCCTCGG
TCATCCGTATACGCCATAGGGATGCGGTTGAGGAATCGATTCGGTTCCTC
AACGATTCTCTTCTGCATGATGCGGGGCATATCGAGCTCGCTGCGGAATG
CTTGCGCAGGGCCTGTTTCAGCATCGGCCGGGTCACGGGCCGGGTCGATG
TGGAGGATCTGCTG
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