mRNA_P-wetherbeei_contig21407.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21407.1.1
Unique NamemRNA_P-wetherbeei_contig21407.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A7K1B759_9ACTN (Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A7K1B759_9ACTN)

HSP 1 Score: 375 bits (962), Expect = 1.360e-129
Identity = 184/242 (76.03%), Postives = 208/242 (85.95%), Query Frame = 1
Query:    1 TVVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            TVVVPT+NEADNI+ L R VR   P+A +L+VDD SPDGTAD AE+L   LGN+ V+RR  K GLG AYRAGLR AI AGAEICVQMDADMSH P  LPAL+AI EHG D+AIGSRYVPGG+T +WP RRRW+SRWGNRYAAGVLGLAINDATAGYRAYRS ALE+M+F+TVA +GYGFQIEMTYR+VRLGGKV EFPITFRDR EG SK SGSI+ EAL+LV++LW+ADFGGRR RRA+GG
Sbjct:    4 TVVVPTFNEADNIETLIRGVRHELPDALILVVDDGSPDGTADRAEKLHEVLGNVEVVRRDSKDGLGAAYRAGLRHAIDAGAEICVQMDADMSHDPGVLPALVAIVEHGADVAIGSRYVPGGITLDWPRRRRWVSRWGNRYAAGVLGLAINDATAGYRAYRSTALEQMRFDTVAAEGYGFQIEMTYRIVRLGGKVVEFPITFRDRIEGESKFSGSIVREALLLVLRLWVADFGGRRRRRAQGG 245          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A6I3F0X5_9ACTN (Glycosyltransferase n=4 Tax=root TaxID=1 RepID=A0A6I3F0X5_9ACTN)

HSP 1 Score: 357 bits (917), Expect = 1.480e-122
Identity = 179/241 (74.27%), Postives = 197/241 (81.74%), Query Frame = 1
Query:    1 TVVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARG 723
            TVVVPTYNE DNI+RLCR V   AP+  +L+VDD SPDGTA+ AE LG ELG+I+VLRR  K GLG AYRAGLR AI  GAEICVQMDAD+SH P  LPALIA  EHG DLAIGSRYVPGG T NWP RRR LSRWGNRYAAGVLGLAINDATAGYRAY S ALERMQFE+V  +GYGFQ+EMTYRL+R+ GK+ EFPITF DR +G SKMSG II EAL LVIKLW++DF GR  RR+ G
Sbjct:   16 TVVVPTYNEIDNIERLCREVLTAAPDVQILVVDDGSPDGTAEKAEALGHELGHITVLRRTEKNGLGRAYRAGLRRAIDDGAEICVQMDADLSHDPAVLPALIANVEHGADLAIGSRYVPGGRTVNWPTRRRQLSRWGNRYAAGVLGLAINDATAGYRAYSSAALERMQFESVKAEGYGFQVEMTYRLLRVDGKIVEFPITFHDRIDGVSKMSGGIIKEALFLVIKLWVSDFKGRHRRRSEG 256          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A7X9Q2R1_9ACTN (Polyprenol monophosphomannose synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q2R1_9ACTN)

HSP 1 Score: 348 bits (894), Expect = 3.070e-119
Identity = 176/241 (73.03%), Postives = 195/241 (80.91%), Query Frame = 1
Query:    1 TVVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARG 723
            TVVVPTYNE +NI+RL R V A AP   +L+VDD SPDGTAD AE LG ELG++SVLRR  K GLG+AYRAGLR AI  GAEICVQMDADMSH P  L ALI   E G DLAIGSRYVPGG T +WP RRR LSRWGNRYAAGVLGLA+NDATAGYRAY +  LE+MQFE+V   GYGFQ+EMTYR+V  GGK+ EFPI+F DRTEG SKMSGSII EALVLV+KLW++DF GRR RRA G
Sbjct:    4 TVVVPTYNEIENIERLIREVLAAAPHVQILVVDDGSPDGTADKAEALGRELGHVSVLRRTEKNGLGNAYRAGLRKAIDDGAEICVQMDADMSHDPAVLAALIGNVEFGADLAIGSRYVPGGRTVDWPRRRRMLSRWGNRYAAGVLGLAVNDATAGYRAYSAAGLEQMQFESVQADGYGFQVEMTYRMVSSGGKIVEFPISFHDRTEGVSKMSGSIIQEALVLVMKLWLSDFRGRRRRRAEG 244          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A7K0VJD2_9ACTN (Glycosyltransferase n=4 Tax=root TaxID=1 RepID=A0A7K0VJD2_9ACTN)

HSP 1 Score: 349 bits (895), Expect = 4.660e-119
Identity = 170/241 (70.54%), Postives = 201/241 (83.40%), Query Frame = 1
Query:    7 VVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEAL-ERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            +VPTYNEADNI+ LCR++R  AP   +L+VDD SPDGTA +AE L  ELG+I+VLRRP K+GLG AYRAG+RAAI AGAEIC+Q+DAD SH P  +PALI+  EHG DLA+GSRYVPGGLTENWP +RRWLSRWGNRYA+GVLGLAINDATAG+RAYRS AL ++M FETV   GYGFQ+EMT+RLVR GGK+ E PITFRDRT G SKMS +I+ EAL++V+KLW+ D  GRR RR +GG
Sbjct:   27 IVPTYNEADNIEALCRSIRLHAPGVGILVVDDNSPDGTAKIAEGLADELGDITVLRRPSKSGLGAAYRAGIRAAIDAGAEICIQIDADFSHDPVEIPALISAVEHGVDLAVGSRYVPGGLTENWPRKRRWLSRWGNRYASGVLGLAINDATAGFRAYRSSALVDKMHFETVKADGYGFQVEMTHRLVRSGGKIVEIPITFRDRTAGQSKMSQNIVQEALIMVLKLWVDDRRGRRQRRIQGG 267          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A6I3WW53_9ACTN (Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A6I3WW53_9ACTN)

HSP 1 Score: 342 bits (878), Expect = 8.650e-117
Identity = 164/241 (68.05%), Postives = 199/241 (82.57%), Query Frame = 1
Query:    7 VVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEAL-ERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            +VPTYNEADNI+ LCR++RA AP+  +L+VDD SPDGTAD+ ER+  ++G+++VLRR GK GLG AYRAG+RAAI  GAEIC+Q+DAD SH P  +P L++  EHG DLA+GSRYVPGG+TENWP +RR LSRWGNRYA+GVLGLAINDATAG+RAYRS +L ++M FE V   GYGFQ+EMT+RLVR GGK+ E PITFRDRT G SKMS +I+ EALVLV+KLWI D  GRR RR +GG
Sbjct:    6 IVPTYNEADNIEALCRSIRANAPDVGILVVDDNSPDGTADIVERIAADVGDVTVLRRSGKQGLGAAYRAGMRAAIDGGAEICIQIDADFSHDPAEIPNLVSAVEHGVDLAVGSRYVPGGITENWPRKRRMLSRWGNRYASGVLGLAINDATAGFRAYRSSSLVDKMHFEAVRADGYGFQVEMTHRLVRAGGKIVEIPITFRDRTAGQSKMSQNIVQEALVLVLKLWIEDRRGRRQRRIQGG 246          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A6N2DI80_9ACTN (Polyprenol monophosphomannose synthase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DI80_9ACTN)

HSP 1 Score: 333 bits (854), Expect = 3.380e-113
Identity = 163/241 (67.63%), Postives = 186/241 (77.18%), Query Frame = 1
Query:    4 VVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            VVVPTYNE  NID +C  +R V PEA +L+VDD SPDGTA+   RL   LG I V+ R  K GLG AYRAGL AAI  GA+ICVQMDAD+SH P  LPAL+A+  HG DL IGSRYVPGG+TENWP  RRWLSRWGNRYAAGVLGLA+NDATAGYRAY + +LE+M F TV  +GYGFQIEMT+RLVR GG++ EFPITFR+RT G SKMS  I+ EA  LV +LW+ D  GRR RR RGG
Sbjct:    2 VVVPTYNEVGNIDAVCTQIREVLPEAEVLVVDDGSPDGTAEAVRRLTSRLGRIDVIERTEKQGLGAAYRAGLAAAIERGADICVQMDADLSHDPADLPALVAVVSHGADLCIGSRYVPGGITENWPAWRRWLSRWGNRYAAGVLGLAVNDATAGYRAYSARSLEQMDFATVRAEGYGFQIEMTHRLVRQGGRIVEFPITFRERTSGRSKMSRRIVLEAFALVWRLWLQDRRGRRQRRRRGG 242          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A7W1CND5_9ACTN (Polyprenol monophosphomannose synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CND5_9ACTN)

HSP 1 Score: 332 bits (852), Expect = 7.550e-113
Identity = 165/241 (68.46%), Postives = 185/241 (76.76%), Query Frame = 1
Query:    4 VVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            VV+PTYNE +NI+ L R VR   P+A +L+VDDASPDGTA LA  +G E G++ VL R  K GLG AYR G R AI  GAEICVQMDAD+SH PD LPAL+   E G DLAIGSRYVPGGLTENWP RRRWLSRWGNRYAAGVLGLA+NDATAGYRAYR+ AL  M FETV   GYGFQIEMT+RLVR GG++ EFPI FRDR  G SK+S  I+ EA  LV +LW+AD  GRR RR  GG
Sbjct:    5 VVIPTYNEVENIEELARRVRKALPDAGILVVDDASPDGTAALAAGVGAEHGDLDVLARGSKQGLGSAYREGFRRAIDGGAEICVQMDADLSHDPDVLPALVGNIELGADLAIGSRYVPGGLTENWPRRRRWLSRWGNRYAAGVLGLAVNDATAGYRAYRTSALTAMDFETVGADGYGFQIEMTHRLVRAGGRIVEFPIEFRDRRAGESKLSQGIVGEAFGLVARLWLADRRGRRLRRRSGG 245          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A4R7HXJ9_9ACTN (Dolichol-phosphate mannosyltransferase n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HXJ9_9ACTN)

HSP 1 Score: 327 bits (839), Expect = 8.240e-111
Identity = 165/241 (68.46%), Postives = 188/241 (78.01%), Query Frame = 1
Query:    1 TVVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARG 723
            TVV+PTY EA NI+ + R VRA  P+A +L+VDDASPDGTAD+A  L  ELG + V+ RP K+GLG AYR G R AI  GAEICVQ+DADMSH P  LP L+A  E G DLAIGSRYVPGG T +WP  RR LSRWGNRYAAGVLGLA+NDATAGYRAY SEALERM FE V  +GYGFQ+EMT+RLVR  GKV EFPITFR+RT G SK+SG I+ EA  LV++LW+AD  GRR RR RG
Sbjct:    8 TVVIPTYQEAGNIEAVLRGVRASLPDARVLVVDDASPDGTADIARSLADELGAVDVVDRPAKSGLGSAYRDGFRRAIDDGAEICVQLDADMSHDPTLLPVLVANVELGADLAIGSRYVPGGRTVDWPGSRRALSRWGNRYAAGVLGLAVNDATAGYRAYSSEALERMGFEAVRAEGYGFQVEMTHRLVRAEGKVVEFPITFRERTAGESKLSGGIVREAAGLVVRLWLADRRGRRERRRRG 248          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A7W0R0A2_9ACTN (Polyprenol monophosphomannose synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R0A2_9ACTN)

HSP 1 Score: 320 bits (819), Expect = 8.180e-108
Identity = 157/240 (65.42%), Postives = 185/240 (77.08%), Query Frame = 1
Query:    7 VVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            VVPT+NEADN+  L   +RA  P   +L+VDDASPDGTA+LA+RL   LG+I V+ RP K GLG AYRAG R A+  GA++CVQ+DAD+SH P  LPAL+A  EHG DLAIGSRYVPGG T NWP RRRWLSRWGNRY+AGVLGLA+NDAT+GYRAYR+ AL  M FETV  +GYGFQ+EMT+RLVR GGK+ EFPI FRDR  G SK+S  I+ EA+ LV +LW+ D  GRR RR   G
Sbjct:    7 VVPTFNEADNLGELVARLRAAVPGVGVLVVDDASPDGTAELAKRLDAGLGDIDVVTRPSKLGLGSAYRAGFRRAMDDGADVCVQIDADLSHDPAVLPALLANIEHGADLAIGSRYVPGGATLNWPWRRRWLSRWGNRYSAGVLGLAVNDATSGYRAYRAAALRSMDFETVTAEGYGFQVEMTHRLVRAGGKIVEFPIEFRDRRAGHSKLSQDIVGEAVGLVGRLWLDDRRGRRRRRRASG 246          
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Match: A0A539DNV5_9ACTN (Ppm1 (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DNV5_9ACTN)

HSP 1 Score: 317 bits (811), Expect = 5.490e-107
Identity = 156/220 (70.91%), Postives = 178/220 (80.91%), Query Frame = 1
Query:   67 VAPEATMLIVDDASPDGTADLAERLGVELGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPALIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAINDATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPITFRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG 726
            V P++ +L++DD SPDGTAD AE L   LG I V+RR  K GLG AYR GLR AI  GAEICVQ+DAD+SH P +LPALIA  E G D+AIGSRYVPGG+T NWP RRR +SRWGNRYAAGVLGLA+ND TAGYRAYRS+ALERM F+TV+ +GYGFQ+EMTYR+VRLGG+V E PITFRDR EG SK SG I+ EA  LV +LWIADFGGRR RRA GG
Sbjct:    1 VVPDSAILVIDDGSPDGTADAAEALAETLGGIEVIRRDAKGGLGAAYRFGLRRAIDQGAEICVQIDADLSHDPASLPALIAAVEFGADVAIGSRYVPGGITLNWPRRRRQVSRWGNRYAAGVLGLAVNDVTAGYRAYRSDALERMAFDTVSAEGYGFQVEMTYRIVRLGGRVVEIPITFRDRMEGDSKFSGGIVREAFWLVGRLWIADFGGRRRRRALGG 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B759_9ACTN1.360e-12976.03Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A6I3F0X5_9ACTN1.480e-12274.27Glycosyltransferase n=4 Tax=root TaxID=1 RepID=A0A... [more]
A0A7X9Q2R1_9ACTN3.070e-11973.03Polyprenol monophosphomannose synthase n=1 Tax=Act... [more]
A0A7K0VJD2_9ACTN4.660e-11970.54Glycosyltransferase n=4 Tax=root TaxID=1 RepID=A0A... [more]
A0A6I3WW53_9ACTN8.650e-11768.05Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A6N2DI80_9ACTN3.380e-11367.63Polyprenol monophosphomannose synthase n=1 Tax=Ilu... [more]
A0A7W1CND5_9ACTN7.550e-11368.46Polyprenol monophosphomannose synthase n=1 Tax=Aci... [more]
A0A4R7HXJ9_9ACTN8.240e-11168.46Dolichol-phosphate mannosyltransferase n=2 Tax=Ilu... [more]
A0A7W0R0A2_9ACTN8.180e-10865.42Polyprenol monophosphomannose synthase n=1 Tax=Aci... [more]
A0A539DNV5_9ACTN5.490e-10770.91Ppm1 (Fragment) n=1 Tax=Acidimicrobiaceae bacteriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21407contigP-wetherbeei_contig21407:3..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_25270
PFAMsGlycos_transf_2
Model size729
Max annot lvl84992|Acidimicrobiia
KEGG rclassRC00005
KEGG koko:K00721
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-77
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,2I2FA@201174|Actinobacteria,4CN03@84992|Acidimicrobiia
EC2.4.1.83
DescriptionGlycosyltransferase like family 2
Cds size729
COG categoryS
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.4508684-CDS-P-wetherbeei_contig21407:2..7311683186224.4508684-CDS-P-wetherbeei_contig21407:2..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21407 3..731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21407.1.1prot_P-wetherbeei_contig21407.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21407 3..731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21407.1.1

>prot_P-wetherbeei_contig21407.1.1 ID=prot_P-wetherbeei_contig21407.1.1|Name=mRNA_P-wetherbeei_contig21407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
TVVVPTYNEADNIDRLCRAVRAVAPEATMLIVDDASPDGTADLAERLGVE
LGNISVLRRPGKTGLGDAYRAGLRAAIAAGAEICVQMDADMSHPPDALPA
LIAIAEHGGDLAIGSRYVPGGLTENWPPRRRWLSRWGNRYAAGVLGLAIN
DATAGYRAYRSEALERMQFETVAGKGYGFQIEMTYRLVRLGGKVAEFPIT
FRDRTEGTSKMSGSIISEALVLVIKLWIADFGGRRTRRARGG*
back to top

mRNA from alignment at P-wetherbeei_contig21407:3..731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21407.1.1 ID=mRNA_P-wetherbeei_contig21407.1.1|Name=mRNA_P-wetherbeei_contig21407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig21407:3..731+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTGGTCGTTCCGACATACAACGAGGCGGACAACATCGACCGGCTGTG CCGCGCCGTGCGCGCCGTCGCCCCGGAGGCGACGATGCTGATCGTCGACG ACGCCAGCCCGGACGGCACCGCCGACCTGGCGGAACGGCTCGGTGTCGAG CTCGGCAACATCAGTGTGCTGCGCCGCCCGGGCAAGACCGGGCTCGGTGA CGCCTACCGCGCCGGGTTGCGCGCCGCGATCGCGGCCGGTGCCGAGATCT GCGTGCAGATGGATGCCGACATGTCGCACCCGCCCGACGCCCTGCCGGCG CTGATCGCCATCGCCGAGCACGGCGGCGATCTCGCCATCGGCAGCCGCTA CGTGCCCGGCGGGCTCACCGAGAACTGGCCTCCGCGTCGTCGGTGGCTGT CGCGCTGGGGCAACCGGTACGCCGCCGGCGTGCTCGGCCTGGCGATCAAC GACGCCACGGCCGGGTACCGCGCCTACCGCTCCGAGGCGCTGGAGCGGAT GCAGTTCGAGACCGTGGCCGGCAAGGGCTACGGCTTCCAGATCGAGATGA CGTATCGGCTGGTTCGCCTCGGCGGCAAGGTCGCCGAGTTCCCGATCACC TTCCGCGACCGCACCGAGGGCACCTCGAAGATGTCCGGCAGCATCATCAG CGAGGCCCTCGTCCTCGTGATCAAGCTCTGGATCGCCGACTTCGGTGGCC GACGGACACGCCGCGCACGCGGCGGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21407:3..731+

>mRNA_P-wetherbeei_contig21407.1.1 ID=mRNA_P-wetherbeei_contig21407.1.1|Name=mRNA_P-wetherbeei_contig21407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig21407:3..731+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTGGTCGTTCCGACATACAACGAGGCGGACAACATCGACCGGCTGTG
CCGCGCCGTGCGCGCCGTCGCCCCGGAGGCGACGATGCTGATCGTCGACG
ACGCCAGCCCGGACGGCACCGCCGACCTGGCGGAACGGCTCGGTGTCGAG
CTCGGCAACATCAGTGTGCTGCGCCGCCCGGGCAAGACCGGGCTCGGTGA
CGCCTACCGCGCCGGGTTGCGCGCCGCGATCGCGGCCGGTGCCGAGATCT
GCGTGCAGATGGATGCCGACATGTCGCACCCGCCCGACGCCCTGCCGGCG
CTGATCGCCATCGCCGAGCACGGCGGCGATCTCGCCATCGGCAGCCGCTA
CGTGCCCGGCGGGCTCACCGAGAACTGGCCTCCGCGTCGTCGGTGGCTGT
CGCGCTGGGGCAACCGGTACGCCGCCGGCGTGCTCGGCCTGGCGATCAAC
GACGCCACGGCCGGGTACCGCGCCTACCGCTCCGAGGCGCTGGAGCGGAT
GCAGTTCGAGACCGTGGCCGGCAAGGGCTACGGCTTCCAGATCGAGATGA
CGTATCGGCTGGTTCGCCTCGGCGGCAAGGTCGCCGAGTTCCCGATCACC
TTCCGCGACCGCACCGAGGGCACCTCGAAGATGTCCGGCAGCATCATCAG
CGAGGCCCTCGTCCTCGTGATCAAGCTCTGGATCGCCGACTTCGGTGGCC
GACGGACACGCCGCGCACGCGGCGGCTGA
back to top