mRNA_P-wetherbeei_contig21385.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21385.1.1
Unique NamemRNA_P-wetherbeei_contig21385.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A7S2SDF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDF4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.280e-38
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 QVVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGA-ALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATEV 489
            ++++  P Y Y +SNR N+ +  GDL+ A+ DY +A++L   L A  +A    + WL+ LNRGTTRLALG D   AL DL+ AA A+    D+LLL +R QAYER G++ +AA DY  AL+LKP  VEPWWLRF+LVLF+ G D  A+A  RRV+S+F+   EV
Sbjct:   52 KIIELEPSYPYAFSNRGNLDVLRGDLRLALQDYDQAVEL---LSAESSARLNGEAWLVYLNRGTTRLALGDDPKQALVDLNLAA-AIRRSPDTLLLTSRAQAYERLGDWASAAADYQAALSLKPNDVEPWWLRFSLVLFQLGRDVDAVALARRVRSKFSGEAEV 211          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: D7FQV0_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.600e-37
Identity = 78/166 (46.99%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 QVVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATEVRGA 498
            QVVKYAPGYVYG+SNRANV I+ GDL+ A+ DY RAL LA  +        +PD+W+I LNR                L+ AAK L+  +D   LANR QA+ER G++  A  DY  A+ ++PG+V+PWW+R++LVLF+ G D  +LA+++RVQ++F    EV+ A
Sbjct:  197 QVVKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIY-------MPDKWIIYLNRXXXXXXXXXXXXXXXXLNQAAK-LNTSKDLYTLANRAQAFERRGDWAKALADYEGAINVQPGNVQPWWIRYSLVLFQEGRDFDSLAFLKRVQAKFEGVGEVQAA 354          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A835YLD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.270e-36
Identity = 81/163 (49.69%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    4 VVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASG--VPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATE 486
            V+KYAPGY+YGYSNR NV+I+ GDL+ AI DY  A+ L       E   G  VPD WLI L                          + + DSL LANR QAYER GE+  A  DYG A+ALKPG V+PWWLRFAL LF+ G D  ALAY RR+ ++F DA E
Sbjct:  148 VIKYAPGYIYGYSNRGNVQIAKGDLEAAIRDYTAAIKLC------EETEGIKVPDLWLIHLXXXXXXXXXXXXXXXXXXXXXXXX-XNRKSDSLTLANRAQAYERQGEWPKAVADYGAAIALKPGDVQPWWLRFALSLFQAGADFDALAYARRIATKFGDAPE 303          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: W7TJE8_9STRA (Peptidase s41 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.090e-28
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    1 QVVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATEVR 492
            +V + APGY Y +SN+ N  I+ GDL+  +D Y RA++L   LP     S   D WL+ LN+ TT LAL +  AA+ DLD A + L  + D LL AN+G A ER G+   A  +Y  A+  KP  V+PWWLR+++VLF+   D  A+  +R+V  +F    E +
Sbjct:  195 RVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVEL---LP-----SKTGDAWLVYLNKATTELALDRLDAAIQDLDLA-RVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETK 349          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A7S4ETF5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETF5_CHRCT)

HSP 1 Score: 110 bits (276), Expect = 3.410e-26
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    4 VVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRF 471
            V ++AP Y  GY+NRANVR++ GDL+GA+ DY  AL L   +P   +       W+ LLNRG TR ALG    AL DL  A + LS + D L L  RG    + G Y  AA DYG  +  +P  V+P+WLR+A+ LFE      AL  VRRV ++F
Sbjct:  122 VEEFAPNYADGYANRANVRVARGDLEGAVRDYDTALQL---VPRGNSV------WVNLLNRGATRSALGDTELALSDLQEAVR-LS-QGDKLALLGRGSVLHKLGRYAEAASDYGAVVNKRPLDVQPFWLRYAIDLFEADRRLEALGIVRRVANKF 266          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A2V3J951_9FLOR (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J951_9FLOR)

HSP 1 Score: 99.0 bits (245), Expect = 6.580e-22
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 QVVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRF 471
            Q+V+ AP +   YSNRAN+ ++ G  Q A  DY  +L LA             D W++ +NRG T LA+G   AALDD++ A +     +D  +++NR   YE  G+++ A RDY +AL  +   V+P+W+R+AL LF+      ALA ++RV +RF
Sbjct:   97 QLVEQAPNFAPAYSNRANILVARGRYQDARTDYDTSLRLAPL---------DTDAWVVHVNRGATYLAMGDASAALDDMNVAHELRG--DDPTVMSNRAAVYEVLGKWDNAIRDYQKAL--RSNDVQPFWIRYALALFQRNKSVEALAILKRVAARF 240          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A0M0JQK7_9EUKA (Tetratricopeptide repeat protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQK7_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 5.180e-21
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 1
Query:   16 APGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDAT-ALAYVRRVQSRF 471
            AP Y   Y+NRANVR++ G+  GA+ DY  AL LA   P A+      D W+  LN G T +A  +   ALD+++ A +    ++D L L  RG AY   G++ AAA D+G AL   P  ++P+W+R+AL LFE  +    AL  +RRV +++
Sbjct:  126 APNYYGAYANRANVRVARGNYVGAVADYEAALRLA---PLAK------DAWITYLNLGATLIAADRAPEALDNMERAVR--MSKDDRLALLGRGNAYHALGKWGAAAADHGAALEKNPSDIQPFWIRYALELFEARERRPEALGIIRRVAAKY 267          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A7S3SZP1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZP1_9SPIT)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-20
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   76 LQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRF 471
            LQGA++DY +AL+LA   P A+      D W+  LNRG+T +ALG+   AL DLD A   L  + D L +  RG AY   G + AAA DYG A+A  P  V+P+WLR++L  F+ G    A    RR+ ++F
Sbjct:    7 LQGALEDYSKALELA---PEAK------DAWVNHLNRGSTLVALGRGDEALADLDRAV--LLSKSDILAVLGRGAAYHSLGRWTAAASDYGAAIAKNPADVQPFWLRYSLESFQLGQLTEAFGIGRRITNKF 127          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A7R9U302_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U302_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.600e-15
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 1
Query:   16 APGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAASGVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDS--LLLANRGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATEVRGA 498
            AP  V  ++ R N  +   +L+ A   Y +AL+LA         S     W++ LNRG   L LG+   AL+DL+ A +      D   LLL N                 Y  ALA KPGS+EPWW R+AL L +TGD   A+A +RRV +++  A E + A
Sbjct:   77 APDNVLAWAGRGNAAVGVQNLEDATMSYSKALELAGD-------SYPSTTWIVRLNRGVLYLNLGEAEKALEDLEKAGQEAPSSGDERLLLLQNXXXXXXXXXXXXXXXXXYRSALAPKPGSIEPWWERYALCLLQTGDGFNAVAIMRRVAAKYELAPEPQAA 232          
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Match: A0A7S2DWS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWS4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.420e-11
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  226 LDDLDAAAKALSPREDSLLLAN-RGQAYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYVRRVQSRFADATE 486
            +DD +AAA  +  R+  + +A  R QAYER G ++ AA DY  A+ +   +V+P+WLR+A VLF+ G D  A++  RRV  RFA ATE
Sbjct:   12 IDDCNAAA--IIRRKPEISIATVRAQAYERLGLWQQAADDYSAAVTMDSKTVQPFWLRYAAVLFQLGRDNEAISLARRVTIRFAGATE 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21385.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S2SDF4_9STRA1.280e-3850.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FQV0_ECTSI7.600e-3746.99TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YLD8_9STRA3.270e-3649.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TJE8_9STRA1.090e-2841.46Peptidase s41 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S4ETF5_CHRCT3.410e-2644.87Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2V3J951_9FLOR6.580e-2238.22UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A0M0JQK7_9EUKA5.180e-2139.87Tetratricopeptide repeat protein n=1 Tax=Chrysochr... [more]
A0A7S3SZP1_9SPIT2.000e-2043.18Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7R9U302_9STRA2.600e-1535.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2DWS4_9STRA4.420e-1145.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21385contigP-wetherbeei_contig21385:223..999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD03640
PFAMsTPR_8
Model size498
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.49e-25
EggNOG OGs2CYTM@1|root,2S4PU@2759|Eukaryota
Ec32 ortholog descriptionTPR domain-containing protein
Ec32 orthologEc-16_000850.1
DescriptionTetratricopeptide repeat
Cds size498
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.911739-CDS-P-wetherbeei_contig21385:222..5071683186223.911739-CDS-P-wetherbeei_contig21385:222..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21385 223..507 +
1683186223.9200761-CDS-P-wetherbeei_contig21385:786..9991683186223.9200761-CDS-P-wetherbeei_contig21385:786..999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21385 787..999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21385.1.1prot_P-wetherbeei_contig21385.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21385 223..999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21385.1.1

>prot_P-wetherbeei_contig21385.1.1 ID=prot_P-wetherbeei_contig21385.1.1|Name=mRNA_P-wetherbeei_contig21385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
QVVKYAPGYVYGYSNRANVRISGGDLQGAIDDYGRALDLAAALPAAEAAS
GVPDRWLILLNRGTTRLALGQDGAALDDLDAAAKALSPREDSLLLANRGQ
AYERAGEYEAAARDYGRALALKPGSVEPWWLRFALVLFETGDDATALAYV
RRVQSRFADATEVRGA
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mRNA from alignment at P-wetherbeei_contig21385:223..999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21385.1.1 ID=mRNA_P-wetherbeei_contig21385.1.1|Name=mRNA_P-wetherbeei_contig21385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig21385:223..999+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGTCAAATACGCACCCGGCTACGTCTACGGCTACTCGAACCGTGC CAACGTCCGCATCTCCGGCGGCGACCTGCAGGGCGCCATCGACGACTACG GCCGGGCGTTGGATCTCGCCGCCGCGCTTCCCGCCGCGGAGGCCGCCTCA GGCGTGCCGGACCGATGGCTGATCCTGCTGAACCGTGGGACGACGCGTCT GGCGCTCGGCCAAGACGGGGCGGCGCTGGACGACCTGGACGCCGCGGCGA AGGCGCTTAGCCCGCGGGAGGATTCGCTGCTGCTGGTGTGTCCCGTTGCG ATCTGTGGATTCGACTGCTGCTTCAATTGCTCCTATAGTCACGCGTGTAT GTTGGCAGGCAGGAACGGTAGTTTGCAGGCCCAGCTGTAAAGGGTACCAA GGAAGCCTTCTTAACCGCACATTGGACCTCATTAACTGTCTTTGACAGCA TACAAACTAATCTGCCCCAAGAATTTGCAAAGGGACAAAGAAGTGGGAAA CCAGAACTTTTCTCAAGACACCGCCCTGACTGTCAGACTCCCCAAAAGGT TCCTTCTGCTGCAGGCAAACCGGGGCCAGGCGTACGAGCGCGCGGGGGAG TACGAGGCGGCGGCCCGCGATTACGGGCGGGCGCTGGCGCTTAAGCCGGG GTCTGTGGAGCCGTGGTGGCTCCGCTTCGCCCTGGTGCTCTTCGAGACGG GCGACGACGCCACAGCGCTCGCGTATGTGCGGCGGGTCCAGAGCCGCTTC GCCGACGCCACCGAGGTGAGGGGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21385:223..999+

>mRNA_P-wetherbeei_contig21385.1.1 ID=mRNA_P-wetherbeei_contig21385.1.1|Name=mRNA_P-wetherbeei_contig21385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig21385:223..999+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGTCAAATACGCACCCGGCTACGTCTACGGCTACTCGAACCGTGC
CAACGTCCGCATCTCCGGCGGCGACCTGCAGGGCGCCATCGACGACTACG
GCCGGGCGTTGGATCTCGCCGCCGCGCTTCCCGCCGCGGAGGCCGCCTCA
GGCGTGCCGGACCGATGGCTGATCCTGCTGAACCGTGGGACGACGCGTCT
GGCGCTCGGCCAAGACGGGGCGGCGCTGGACGACCTGGACGCCGCGGCGA
AGGCGCTTAGCCCGCGGGAGGATTCGCTGCTGCTGGCAAACCGGGGCCAG
GCGTACGAGCGCGCGGGGGAGTACGAGGCGGCGGCCCGCGATTACGGGCG
GGCGCTGGCGCTTAAGCCGGGGTCTGTGGAGCCGTGGTGGCTCCGCTTCG
CCCTGGTGCTCTTCGAGACGGGCGACGACGCCACAGCGCTCGCGTATGTG
CGGCGGGTCCAGAGCCGCTTCGCCGACGCCACCGAGGTGAGGGGGGCG
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