mRNA_P-wetherbeei_contig21383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21383.1.1
Unique NamemRNA_P-wetherbeei_contig21383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: I0Z9S6_COCSC (Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z9S6_COCSC)

HSP 1 Score: 93.6 bits (231), Expect = 4.140e-19
Identity = 44/98 (44.90%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  253 PRAMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            P A ++NG+A+A  I +++ +EV+ L++ YG+VPGLAV++VG + DSA YV MKR+    +G  SF+++LP +V  ED+LKV+  YN ++  V G L+
Sbjct:   11 PTAQIINGKAIADSIRKEIADEVKALQEKYGKVPGLAVVLVGTKGDSATYVRMKRKACADLGIQSFSTDLPGDVSEEDLLKVVADYNANEE-VHGILV 107          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A0A3M1HQ69_9CHLR (Methenyltetrahydrofolate cyclohydrolase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1HQ69_9CHLR)

HSP 1 Score: 89.4 bits (220), Expect = 5.280e-19
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  259 AMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            A +++G+A+A  I  +++ EVE ++  YGRVPGLA ++VGDR DSA YV MK++    VG  SF  ELPA++  ED+LKV+   N D+  V G L+
Sbjct:    3 AQIIDGKAIAATIRGEIKQEVEEMKARYGRVPGLAAVLVGDRPDSATYVRMKKKACAEVGITSFGYELPADISQEDLLKVVRDLN-DNPDVHGILV 97          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A0A7J7PX70_9CHLO (Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PX70_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 7.470e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  256 RAMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            +A L++G+ +A DI +++  EV+ L+ A GR PGLAV++VG RKDS  YV  K++    VGF SF ++LP +V  E++LKV+ QYN D + V G L+
Sbjct:   47 KASLIDGKKIAEDIRKEIAAEVQQLQKAAGRAPGLAVVLVGARKDSETYVRSKKKACAEVGFESFGTDLPEDVSQEELLKVVAQYNADPK-VDGILV 142          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: W1P2Q8_AMBTC (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1P2Q8_AMBTC)

HSP 1 Score: 89.4 bits (220), Expect = 1.200e-17
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  259 AMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRD 519
            A L++G+A+A  I +++ +EV YL   YG+VPGLAV++VG+RKDS  YV MKR+    VG  SF ++LP +V  E+V++ + ++N D
Sbjct:    9 ANLIDGKAIANTIRKEIASEVSYLSQKYGKVPGLAVVIVGNRKDSQSYVKMKRKACAEVGIKSFDTDLPEDVSEEEVIRKVHEFNAD 95          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: D8TJT9_VOLCA (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJT9_VOLCA)

HSP 1 Score: 89.4 bits (220), Expect = 2.920e-17
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  253 PRAMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            P A L++G+A+A  I  ++  EV  ++  YG  PGLAV++VG RKDS  YV  K++    VGF S+ ++LPA+V  E++LKV++ YN D R V G L+
Sbjct:   83 PHARLIDGKAIADTIRSEIAAEVAAMKQQYGLTPGLAVVLVGSRKDSETYVRSKKKACAEVGFDSYGTDLPADVSEEELLKVVESYNADPR-VHGILV 179          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A0A7S2B626_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2B626_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  265 LVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            +++G+A+A  I  ++ +EV  L+D YGRVPGLAV++VG RKDS  YV MK++    VG  SF   LP  V  E++LKV+  +N  D+ V G L+
Sbjct:   51 VIDGKAVAKTIQGEIASEVSRLKDRYGRVPGLAVVIVGARKDSQTYVRMKKKACADVGIASFEKCLPDTVSQEELLKVVRDFN-SDKSVHGILV 143          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A4S7A0_OSTLU (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7A0_OSTLU)

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-16
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  259 AMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALIISRILRPKG 573
            A +++G+ +A  I  +++ EV+ LR  +G+VPGLAV++VGDRKDS  YV MKR+     G  SF +ELPA+    +VL  + ++N D R V G L+  ++  PKG
Sbjct:    9 AAIIDGKTIASTIRAEIKGEVDALRAKHGKVPGLAVVIVGDRKDSQTYVRMKRKACEEAGIESFHAELPASASEAEVLATVRKFNADAR-VHGILV--QLPLPKG 110          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A0A1Y1HJ72_KLENI (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJ72_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 1.440e-16
Identity = 41/96 (42.71%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  259 AMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            A +++G A+A DI  ++ ++V+ +++ YG+VPGLAVI+VG+RKDS  YV MKR++   VGF SF  ++P +   E+VL+ +  +N D   V G L+
Sbjct:    9 AKIIDGIAIAKDIRLEITSDVQKMKEVYGKVPGLAVIIVGERKDSQTYVRMKRRMCAEVGFVSFDKDMPGDASEEEVLQAVKAFNEDSA-VHGILV 103          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A6XGU7_9CHLO (Methenyltetrahydrofolate cyclohydrolase (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A6XGU7_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.460e-16
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  244 ASRPRAMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            A+R  A L++G+ +A  I ++++ EVE L+  +   PGLAV++VG RKDS  YV  K++    VGF+SF  +LPA++  +D+LKV++ +N D + V G L+
Sbjct:   21 ATRATAKLIDGKFIAETIRKEIKEEVEVLKAKHNLTPGLAVVLVGQRKDSETYVRNKKKACQEVGFNSFGKDLPADITEQDLLKVVEDFNADPK-VHGVLV 120          
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Match: A0A383WIT8_TETOB (Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIT8_TETOB)

HSP 1 Score: 87.4 bits (215), Expect = 1.940e-16
Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  238 SAASRPRAMLVNGRAMAIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSVGFHSFASELPANVHHEDVLKVIDQYNRDDR*VGGALI 546
            +AA+  +A L++G+ +A DI +++  EV+ L+ A GR PGLAV++VG RKDS  YV  K++    VGF SF ++L  +V  E++L+V+ QYN D + V G L+
Sbjct:  134 AAAAPTKAGLIDGKKIAEDIRKEIAAEVQQLQKAAGRAPGLAVVLVGARKDSETYVRSKKKACAEVGFESFGTDLAEDVSQEELLRVVAQYNADPK-VDGILV 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0Z9S6_COCSC4.140e-1944.90Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Co... [more]
A0A3M1HQ69_9CHLR5.280e-1946.88Methenyltetrahydrofolate cyclohydrolase (Fragment)... [more]
A0A7J7PX70_9CHLO7.470e-1846.39Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Sc... [more]
W1P2Q8_AMBTC1.200e-1745.98Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Am... [more]
D8TJT9_VOLCA2.920e-1744.90Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Vo... [more]
A0A7S2B626_9CHLO1.100e-1645.74Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A4S7A0_OSTLU1.200e-1642.86Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Os... [more]
A0A1Y1HJ72_KLENI1.440e-1642.71Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Kl... [more]
A6XGU7_9CHLO1.460e-1641.58Methenyltetrahydrofolate cyclohydrolase (Fragment)... [more]
A0A383WIT8_TETOB1.940e-1643.69Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21383contigP-wetherbeei_contig21383:501..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog248742.XP_005651939.1
PFAMsTHF_DHG_CYH,THF_DHG_CYH_C
Model size671
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorymitochondrion
Exons1
Evalue8.22e-21
EggNOG OGsCOG0190@1|root,KOG0089@2759|Eukaryota,37K6Z@33090|Viridiplantae,34H22@3041|Chlorophyta
DescriptionTetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
Cds size393
COG categoryH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.8700988-UTR-P-wetherbeei_contig21383:500..6351683186223.8700988-UTR-P-wetherbeei_contig21383:500..635Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21383 501..635 +
1683186223.8891478-UTR-P-wetherbeei_contig21383:1028..11711683186223.8891478-UTR-P-wetherbeei_contig21383:1028..1171Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21383 1029..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.8787262-CDS-P-wetherbeei_contig21383:635..10281683186223.8787262-CDS-P-wetherbeei_contig21383:635..1028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21383 636..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21383.1.1prot_P-wetherbeei_contig21383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21383 636..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21383.1.1

>prot_P-wetherbeei_contig21383.1.1 ID=prot_P-wetherbeei_contig21383.1.1|Name=mRNA_P-wetherbeei_contig21383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MRWRGGGFPRLHHLVASKCGCHGVSQRVGQAAGRSAASRPRAMLVNGRAM
AIDILRDVRNEVEYLRDAYGRVPGLAVIVVGDRKDSAKYVSMKRQVATSV
GFHSFASELPANVHHEDVLKVIDQYNRDDR*
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mRNA from alignment at P-wetherbeei_contig21383:501..1171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21383.1.1 ID=mRNA_P-wetherbeei_contig21383.1.1|Name=mRNA_P-wetherbeei_contig21383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=671bp|location=Sequence derived from alignment at P-wetherbeei_contig21383:501..1171+ (Phaeothamnion wetherbeei SAG_119_79)
TGTAAGAATATAAAAATGCGGCGCGGGAGTCGTCCGCGTTTTCCCTACCT CTCGATGCATCAGGAAAAGTTCATAATGTGGGATTTCCTCGTTTGTCCTC GGAGTCAGTGCTTTTGATTTCAGCGAGCTACGGAGATGAGGTGGCGAGGA GGCGGATTTCCGCGCCTCCATCACCTCGTCGCCTCGAAATGCGGCTGTCA TGGCGTCTCGCAGAGAGTTGGACAAGCAGCAGGGAGGAGTGCAGCGTCTC GACCGCGCGCGATGCTGGTCAACGGGCGCGCCATGGCCATTGACATCCTC CGCGACGTCCGCAACGAGGTTGAATACCTGCGGGATGCGTATGGCCGAGT GCCGGGCCTGGCTGTCATTGTCGTCGGCGATCGCAAGGACAGCGCAAAGT ACGTGAGCATGAAGCGGCAGGTCGCCACCAGCGTCGGCTTCCACTCTTTT GCCTCGGAGCTGCCGGCCAACGTGCACCACGAGGACGTTTTAAAGGTCAT CGATCAGTACAACCGCGATGATCGGTGAGTGGGAGGTGCTCTTATTATCT CAAGAATCCTTCGTCCTAAAGGCAACGCTAGCATCCCATCACATTAACAT CGCTTTGTGCAGAGGCGTGTAAAAAAGACAGATCCTAGAACAAAGATGAT GTGGAAATGCGTAGACCAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21383:501..1171+

>mRNA_P-wetherbeei_contig21383.1.1 ID=mRNA_P-wetherbeei_contig21383.1.1|Name=mRNA_P-wetherbeei_contig21383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig21383:501..1171+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGTGGCGAGGAGGCGGATTTCCGCGCCTCCATCACCTCGTCGCCTC
GAAATGCGGCTGTCATGGCGTCTCGCAGAGAGTTGGACAAGCAGCAGGGA
GGAGTGCAGCGTCTCGACCGCGCGCGATGCTGGTCAACGGGCGCGCCATG
GCCATTGACATCCTCCGCGACGTCCGCAACGAGGTTGAATACCTGCGGGA
TGCGTATGGCCGAGTGCCGGGCCTGGCTGTCATTGTCGTCGGCGATCGCA
AGGACAGCGCAAAGTACGTGAGCATGAAGCGGCAGGTCGCCACCAGCGTC
GGCTTCCACTCTTTTGCCTCGGAGCTGCCGGCCAACGTGCACCACGAGGA
CGTTTTAAAGGTCATCGATCAGTACAACCGCGATGATCGGTGA
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