mRNA_P-wetherbeei_contig21380.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: A0A7Y0BY62_9BURK (TetR/AcrR family transcriptional regulator n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0BY62_9BURK) HSP 1 Score: 234 bits (598), Expect = 1.900e-75 Identity = 128/206 (62.14%), Postives = 151/206 (73.30%), Query Frame = 1
Query: 1 MLSERVSAQPEKTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLAAP 618
ML S +KTP GRPR F+PE L AL++FWR+GFE TSLDDL AM+LSRSSFY FG+K+ VF AA+ Y DE F S+ A++ DPLAA +AVLA + AD DGG RGCFFVNSVT LAPHD EL A S HI RV AL+T LLVRAGF+P+ A+DRAGAALALAMG++TLRKAG+PAA +K LL Q + LLA P
Sbjct: 1 MLPIAASVHLQKTPVAAGRPRQFLPETVLQTALELFWRKGFEATSLDDLLGAMRLSRSSFYGCFGSKQGVFTAAVHAYADECFTTFSAAAEAAPDPLAAVRAVLAAV---ADVDGGTRGCFFVNSVTELAPHDVELTAYSQGHIARVAALVTDLLVRAGFAPQLAQDRAGAALALAMGAITLRKAGIPAARIKMLLDQAQMLLALP 203
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: A0A2G8T3Q0_9BURK (TetR family transcriptional regulator n=2 Tax=Massilia psychrophila TaxID=1603353 RepID=A0A2G8T3Q0_9BURK) HSP 1 Score: 192 bits (488), Expect = 1.160e-58 Identity = 107/204 (52.45%), Postives = 139/204 (68.14%), Query Frame = 1
Query: 1 MLSERVSAQPEKTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLA 612
++ + + ++T +GRPR FVP +AL +AL VFW QG++ TSLDDLT AM LSRSSFYA FG+K V +AA++ Y DE FA + ++A ++ L A AVLA I A+ D G RGCFFVN VT LAPHD LAA H+ R AL+ GLL RAGF+P A+ RA A LAL +G++TLRKAG+PA + T+L Q + LLA
Sbjct: 4 LIHQSTYSHTQQTSPVMGRPRQFVPAEALRDALKVFWEQGYQATSLDDLTAAMHLSRSSFYACFGSKHAVMMAAVELYADELFARLEAMAAASMSALEAVHAVLAAI---AEVDAGRRGCFFVNCVTELAPHDPALAAFGQYHVGRTGALIAGLLERAGFTPELAQTRAVALLALVIGTITLRKAGLPAPELLTILSQAQLLLA 204
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: A0A0Q4NXS2_9BURK (HTH tetR-type domain-containing protein n=2 Tax=unclassified Duganella TaxID=2636909 RepID=A0A0Q4NXS2_9BURK) HSP 1 Score: 188 bits (478), Expect = 2.090e-57 Identity = 102/188 (54.26%), Postives = 132/188 (70.21%), Query Frame = 1
Query: 49 VGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLA 612
+GRPR FVP +AL +AL+VFW +G++ TSLDDLT AM LSRSSFYA FG+K V +AA++ Y DE FA + ++A S + A +AV A + +A D G RGCFFVN VT LAPHD LAA H+ R+ L+ GLL RAGF+P A+ RA A LAL +G++TLRKAG+PA + T+L Q + LLA
Sbjct: 2 LGRPRQFVPAEALRDALEVFWEKGYQATSLDDLTAAMHLSRSSFYACFGSKHAVLMAAVELYADELFARLEAMASS----MPALEAVHAVLAAIAAVDAGRRGCFFVNCVTELAPHDAALAAFGQRHVARIGKLVVGLLERAGFTPELAQTRAAALLALVIGTITLRKAGLPAPELLTILNQAQLLLA 185
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: UPI001E524BEF (TetR/AcrR family transcriptional regulator n=1 Tax=Massilia soli TaxID=2792854 RepID=UPI001E524BEF) HSP 1 Score: 188 bits (477), Expect = 2.960e-57 Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = 1
Query: 49 VGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLA 612
+GRPR FVP +AL +AL VFW +G++ TSLDDLT AM LSRSSFYA FG+K V +AA++ Y +E FA + ++A S+ + + AVLA I A+ D G RGCFFVNSVT LAPHD LAA H+ R AL+ GLL RAGF P A RA A LAL +G++TLRKAG+P A ++ +L Q + LLA
Sbjct: 1 MGRPRQFVPAEALRDALAVFWEKGYQATSLDDLTAAMHLSRSSFYACFGSKHAVMMAAVELYANELFARLEALAASSMPAIESIHAVLAAI---AEVDAGPRGCFFVNSVTELAPHDAALAAFGQHHVARTGALVIGLLERAGFGPETAHARAAALLALVIGTITLRKAGLPVAELQAILSQAQLLLA 185
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: UPI0019A5E901 (TetR/AcrR family transcriptional regulator n=1 Tax=Bacteriovorax sp. TaxID=2608087 RepID=UPI0019A5E901) HSP 1 Score: 168 bits (426), Expect = 2.450e-49 Identity = 98/201 (48.76%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 16 VSAQPEKTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLAAP 618
+S Q P+GRPR F E AL A+D+FW+QG+EVTSL+ L +AM LSRSSFYA FG+K + ++A+Q Y D+ +A+++ + +P A +A+LA I AD DGG RGC FVN+V LAP D EL + H RV AL+T L R G + A RAGA LAL MG TLRK GVPA+ +K LL Q L+ +P
Sbjct: 1 MSKQSAAASAPLGRPRGFDAEAALRIAVDLFWQQGYEVTSLEALCQAMGLSRSSFYACFGSKHALLMSAVQRYADDRYASLTERVAACANPREAVRAMLAVI---ADVDGGTRGCLFVNAVAELAPGDAELLLFAQSHTARVGALMTATLRRLGCTEAEASARAGALLALVMGVTTLRKTGVPASQLKGLLAQADHLIPSP 198
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: UPI001992CDA5 (TetR/AcrR family transcriptional regulator n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=UPI001992CDA5) HSP 1 Score: 167 bits (423), Expect = 7.620e-49 Identity = 97/191 (50.79%), Postives = 122/191 (63.87%), Query Frame = 1
Query: 46 PVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLAAP 618
P+GRPR F E AL A+DVFW+QG+E TSL+ L+ AM LSRSSFYA FG+K + +AA+Q Y D+ +A + ++ DP A QA+LA I AD DGG RGC FVN+V+ LAP D L A + H RV AL+T L R G + A +RAGA LAL MG TLRK GVP + + LL Q L+ P
Sbjct: 11 PLGRPRGFDVEAALRIAIDVFWQQGYEATSLEALSHAMGLSRSSFYACFGSKHALLMAAVQRYADDRYATLVERVAASADPRQAVQAMLAVI---ADVDGGTRGCLFVNAVSELAPGDAALLALAQAHTARVGALMTTTLRRLGCAEGEASERAGALLALVMGVTTLRKTGVPPSQLVALLNQADPLIPRP 198
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: A0A257QVP4_9PROT (HTH tetR-type domain-containing protein n=1 Tax=Rhodospirillales bacterium 20-60-12 TaxID=1970565 RepID=A0A257QVP4_9PROT) HSP 1 Score: 155 bits (392), Expect = 2.950e-44 Identity = 90/187 (48.13%), Postives = 118/187 (63.10%), Query Frame = 1
Query: 52 GRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLA 612
GRPR F PE AL AL VFWRQG+ TS+D+LT AM + RSSFYA FGTK + + ++ Y D FA + +IA S D AA A+L + A+ +GG +GC F++ ++ LAP D ELAA HI RV L+T +L+ A P A RAGA LA A+G++ LRKAG+P A + LL + LLA
Sbjct: 11 GRPRGFEPEAALRAALAVFWRQGYRATSVDELTAAMGIRRSSFYACFGTKHALLMQSVAHYADHVFADLQAIAASGLDHDAAIAAILDRV---AEPEGGVQGCLFISMISELAPDDAELAAYGRFHIARVGDLVTSILIAARIPPAEAATRAGALLACAVGAIMLRKAGLPPAQIAALLAATRPLLA 194
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: A0A346R5N8_9HYPH (TetR/AcrR family transcriptional regulator n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R5N8_9HYPH) HSP 1 Score: 153 bits (386), Expect = 2.300e-43 Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 19 SAQPEKTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLL 609
S Q K GRPRAF AL AL++FWRQG+E +S+ LT AM +SRSSFY FG+K +V +AA+Q+Y+D +AA+S +AD A +AV IT LAD GG RGC F N+V+ +APH ++A S H+ R+ AL L + P A DRAGA +AL +G + LRKAGVP+A ++ +L Q + L+
Sbjct: 7 SRQHHKPQCGPGRPRAFDEATALKAALELFWRQGYEASSIAALTEAMGISRSSFYGCFGSKHDVLMAALQSYSDAAYAALSQMADGP-----AAEAVPRMITALADPTGGERGCMFANTVSEVAPHAPDVADLSRRHLARIEALFARAL--SPDDPDGAADRAGAIVALGLGIIVLRKAGVPSARLEAMLDQGRALI 196
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: UPI000699326A (TetR/AcrR family transcriptional regulator n=1 Tax=Dyella japonica TaxID=231455 RepID=UPI000699326A) HSP 1 Score: 150 bits (379), Expect = 2.130e-42 Identity = 92/192 (47.92%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 34 KTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRAGFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLL 609
KT + GRPR+F + AL +ALDVFWR+G+E TSLDDLT A QLSRSSFYA+FG+KRE+ L A + Y D +A + ++AD D AA +A+ I L DA RGCF VN++ LAP D ELA HI R+ ALL L+ + G AR +A + L MGS R+A V T+K++ KQ LL
Sbjct: 3 KTMSRAGRPRSFDQQVALGDALDVFWRKGYEATSLDDLTEATQLSRSSFYAAFGSKRELLLHAYRRYADAFYADMKTLADEHEDAKAALRAM---IKALVDARPDDRGCFCVNAIVELAPSDPELAELGRAHIQRMCALLEELITQYGTRRPLARAQAATLMTLTMGSAVFRRALVAEDTLKSVQKQALGLL 191
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Match: UPI0004BACB00 (TetR/AcrR family transcriptional regulator n=1 Tax=Rhodovibrio salinarum TaxID=1087 RepID=UPI0004BACB00) HSP 1 Score: 150 bits (379), Expect = 2.690e-42 Identity = 90/190 (47.37%), Postives = 117/190 (61.58%), Query Frame = 1
Query: 52 GRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTRAMQLSRSSFYASFGTKREVFLAAIQTYTDEHFAAVSSIADSTTDPLAATQAVLATITDLADADGGGRGCFFVNSVTALAPHDDELAACSHDHITRVLALLTGLLVRA--GFSPRRARDRAGAALALAMGSLTLRKAGVPAATVKTLLKQMKTLLAA 615
GRPR+F E AL ALDVFWRQG+E TSLDDLT+AM LSRSSFY FG K LAA++ YTD ++++A S P AA QA++ ++ D D G RGC VN +T LA +D E+ A H+TR+ L+ L A G + DRA A +A+ +G++TLRKAGVP + L Q + LL A
Sbjct: 15 GRPRSFDKEAALAAALDVFWRQGYEATSLDDLTQAMGLSRSSFYCCFGAKHACLLAALRAYTDRSVTDLTTVARSAETPRAAVQAMIRSMVDTQD---GCRGCLLVNCITELAGNDPEVQAVVQQHLTRIEGLIAQNLAPALPGEAHETVADRARAVVAITIGAITLRKAGVPGDQIARALDQAEGLLPA 201 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig21380.1.1 >prot_P-wetherbeei_contig21380.1.1 ID=prot_P-wetherbeei_contig21380.1.1|Name=mRNA_P-wetherbeei_contig21380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp MLSERVSAQPEKTPTPVGRPRAFVPEKALHNALDVFWRQGFEVTSLDDLTback to top mRNA from alignment at P-wetherbeei_contig21380:329..949+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig21380.1.1 ID=mRNA_P-wetherbeei_contig21380.1.1|Name=mRNA_P-wetherbeei_contig21380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig21380:329..949+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig21380:329..949+ >mRNA_P-wetherbeei_contig21380.1.1 ID=mRNA_P-wetherbeei_contig21380.1.1|Name=mRNA_P-wetherbeei_contig21380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig21380:329..949+ (Phaeothamnion wetherbeei SAG_119_79)back to top |