mRNA_P-wetherbeei_contig21371.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21371.1.1
Unique NamemRNA_P-wetherbeei_contig21371.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A8J2SM68_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM68_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   25 WWFRDESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            +W R E+  SP    GP+RKY+TFEPD GGWNNIR
Sbjct:  149 YWSRGETHASPYAGYGPKRKYLTFEPDAGGWNNIR 183          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: W7U3X1_9STRA (Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   16 DSVWWFRD----ESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            D  +W R     E   +P  ALGPE+KYVTFEPD GGWNNIR
Sbjct:  155 DIFYWQRYDPDLEKVVNPWAALGPEKKYVTFEPDRGGWNNIR 196          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1
Query:   10 IIDSVWWFR---DESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            I+D  +W     DES+ SP  +LGP  KYVTFEPD  GWNN+R
Sbjct:  338 IVDIAYWKEVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVR 380          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: B8C6L6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6L6_THAPS)

HSP 1 Score: 53.5 bits (127), Expect = 4.450e-7
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1
Query:    1 DGTIIDS-VWWF---RDESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            D TIID  V+W     D S+ SP+       KY+TFEPDHGGWNNIR
Sbjct:  212 DQTIIDEMVFWSDIPSDASYVSPMYDANAPEKYLTFEPDHGGWNNIR 258          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: F0YC72_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC72_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 8.320e-7
Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 1
Query:   25 WWFRDESFR-SPLVALGPERKYVTFEPDHGGWNNIR 129
            +W RD   R SP    GP  KYVTFEPD+GGWNNIR
Sbjct:  386 YWARDPEPRVSPYADYGPSAKYVTFEPDNGGWNNIR 421          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A7S2IFB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFB7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.430e-6
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   16 DSVWWF---RDESFRSPLVALGPER-KYVTFEPDHGGWNNIR 129
            + V+W     D  +RSP  A G E  KY+TFEPDHGGWNNIR
Sbjct:  119 EMVFWSDIPSDAKYRSPFHAKGLENAKYITFEPDHGGWNNIR 160          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A7S4W364_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W364_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 8.740e-6
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   16 DSVWWFR---DESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            D V+W     D  ++SP      E KY+TFEPDHGGWNNIR
Sbjct:   23 DVVYWSNIPSDAEYKSPFYDPS-EEKYLTFEPDHGGWNNIR 62          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A6S7ZGN1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZGN1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1
Query:   22 VWWF---RDESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            V+W    +D+ + SP   LGP+ KY+ FEPD GGWNN+R
Sbjct:  154 VYWQNLPKDKVWESPYKNLGPKNKYLLFEPDEGGWNNLR 192          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: B8C6P2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6P2_THAPS)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   37 DESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            D S++SP +  G E K++TFEPDHGGWNNIR
Sbjct:  139 DASYKSPFMIEG-EEKFLTFEPDHGGWNNIR 168          
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Match: A0A7S1Y7W2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7W2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.420e-5
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 1
Query:   16 DSVWWF---RDESFRSPLVALGPERKYVTFEPDHGGWNNIR 129
            + V+W     D ++RSP      +++Y+TFE DHGGWNNIR
Sbjct:  135 EMVYWEDIPSDNTYRSPFTPTDGKKQYITFESDHGGWNNIR 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21371.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A8J2SM68_9STRA1.950e-862.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7U3X1_9STRA1.270e-759.52Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A6H5L164_9PHAE1.740e-755.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8C6L6_THAPS4.450e-755.32Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
F0YC72_AURAN8.320e-763.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2IFB7_9STRA1.430e-657.14Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4W364_9STRA8.740e-653.66Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6S7ZGN1_9STRA1.020e-551.28Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
B8C6P2_THAPS1.020e-564.52Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1Y7W2_9STRA1.420e-546.34Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21371contigP-wetherbeei_contig21371:608..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps7471
PFAMsO-FucT
Model size129
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.3e-08
EggNOG OGs2B2NM@1|root,2S0D4@2759|Eukaryota
DescriptionGDP-fucose protein O-fucosyltransferase
Cds size129
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.617819-CDS-P-wetherbeei_contig21371:607..7361683186223.617819-CDS-P-wetherbeei_contig21371:607..736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21371 608..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21371.1.1prot_P-wetherbeei_contig21371.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21371 608..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21371.1.1

>prot_P-wetherbeei_contig21371.1.1 ID=prot_P-wetherbeei_contig21371.1.1|Name=mRNA_P-wetherbeei_contig21371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
DGTIIDSVWWFRDESFRSPLVALGPERKYVTFEPDHGGWNNIR
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mRNA from alignment at P-wetherbeei_contig21371:608..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21371.1.1 ID=mRNA_P-wetherbeei_contig21371.1.1|Name=mRNA_P-wetherbeei_contig21371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig21371:608..736- (Phaeothamnion wetherbeei SAG_119_79)
GATGGTACCATTATTGATTCGGTTTGGTGGTTCAGGGACGAGTCTTTTCG GTCGCCGCTGGTGGCGCTGGGTCCTGAACGCAAATACGTGACGTTTGAGC CCGACCACGGCGGCTGGAACAATATCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21371:608..736-

>mRNA_P-wetherbeei_contig21371.1.1 ID=mRNA_P-wetherbeei_contig21371.1.1|Name=mRNA_P-wetherbeei_contig21371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig21371:608..736- (Phaeothamnion wetherbeei SAG_119_79)
GATGGTACCATTATTGATTCGGTTTGGTGGTTCAGGGACGAGTCTTTTCG
GTCGCCGCTGGTGGCGCTGGGTCCTGAACGCAAATACGTGACGTTTGAGC
CCGACCACGGCGGCTGGAACAATATCAGG
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