mRNA_P-wetherbeei_contig21311.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21311.1.1
Unique NamemRNA_P-wetherbeei_contig21311.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Match: A0A024U4X6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4X6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.830e-6
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 SEWTSGDAAARCGHLSLIKE-KTAFDNDLEWSRQAMDDAAGEGNLEVVKWLHAHRREGC 204
            +EW+  DAA+ CG+L L++    A+++D   +  AMD AA  G+LEVV+WLH HR EGC
Sbjct:   36 NEWSMEDAAS-CGYLHLVQRLHMAWEDDECCAEAAMDFAASNGHLEVVRWLHQHRIEGC 93
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BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Match: A0A067CCR9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCR9_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   43 SGDAAARCGHLSLIKEKTAFDNDLEWSRQAMDDAAGEGNLEVVKWLHAHRREGCT 207
            S D A+R G L L++  +  +  LE S  AMD+AA  G+LEVV++LH+HRREGCT
Sbjct:  221 SDDVASR-GFLPLVR--SLHERGLECSSDAMDNAAANGHLEVVRFLHSHRREGCT 272
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BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Match: A0A8K1FGQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGQ5_PYTOL)

HSP 1 Score: 54.3 bits (129), Expect = 3.440e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   85 KEKTAFDNDLEWSRQAMDDAAGEGNLEVVKWLHAHRREGCTR 210
            K++++ +  ++W+  AMD AA  G L+VVKWLH +RREGCT+
Sbjct:  776 KQRSSCNVQVDWTTDAMDQAAKHGRLDVVKWLHTNRREGCTK 817
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BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Match: A0A485L711_9STRA (Aste57867_16589 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L711_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.480e-5
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   49 DAAARCGHLSLIKEKTAFDNDLEW--SRQAMDDAAGEGNLEVVKWLHAHRREGCT 207
            D AA+ G+L L++E  A + +LE   +  AM+DAA  G+L+VVK+LH HR EGC+
Sbjct:  188 DYAAKLGNLELVRELHARELELELRCTESAMNDAAARGHLDVVKFLHQHRVEGCS 242
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BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Match: W4FZC2_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZC2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.600e-5
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   16 DGTSYSEWTSGDAAARCGHLSLIKEKTAFDNDLEWSRQAMDDAAGEGNLEVVKWLHAH 189
            DG  +  WTS D AA  GHL +++ +     +L  +  AMD AA  G++E++KWLH H
Sbjct:   27 DGLEFKHWTSADHAAYAGHLYILQTRMQEGLELAATTNAMDWAACNGHMELLKWLHNH 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21311.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A024U4X6_9STRA1.830e-649.15Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067CCR9_SAPPC1.710e-552.73Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A8K1FGQ5_PYTOL3.440e-550.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L711_9STRA5.480e-549.09Aste57867_16589 protein n=1 Tax=Aphanomyces stella... [more]
W4FZC2_9STRA5.600e-541.38Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21311contigP-wetherbeei_contig21311:2..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008870307.1
PFAMsAnk_4
Model size581
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-07
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_000680.1
Descriptionprotein ubiquitination
Cds size579
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.6406567-CDS-P-wetherbeei_contig21311:3..5821683186221.6406567-CDS-P-wetherbeei_contig21311:3..582Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21311 4..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21311.1.1prot_P-wetherbeei_contig21311.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21311 4..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21311.1.1

>prot_P-wetherbeei_contig21311.1.1 ID=prot_P-wetherbeei_contig21311.1.1|Name=mRNA_P-wetherbeei_contig21311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
VFEAQDGTSYSEWTSGDAAARCGHLSLIKEKTAFDNDLEWSRQAMDDAAG
EGNLEVVKWLHAHRREGCTRALLTRAAGGGHLRVVEWCHANQMEGDIGAA
IDAAAANGHYNVVDWLRTHSANKRARTGGAGTTSPSATATAAAAAAAATA
AAANAPMGMFGTPFGNYTPLNGVSLPRGLPAGGALPHPPEQDG
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mRNA from alignment at P-wetherbeei_contig21311:2..582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21311.1.1 ID=mRNA_P-wetherbeei_contig21311.1.1|Name=mRNA_P-wetherbeei_contig21311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=581bp|location=Sequence derived from alignment at P-wetherbeei_contig21311:2..582- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGAAGCGCAGGACGGGACATCGTATTCGGAGTGGACCAGCGGCGA
CGCGGCCGCGAGATGTGGCCACCTCTCGCTCATCAAGGAAAAAACCGCTT
TCGACAACGACCTGGAGTGGAGCCGACAGGCAATGGACGACGCGGCGGGC
GAGGGCAATTTGGAGGTGGTTAAGTGGCTTCATGCCCACAGACGAGAGGG
CTGCACGCGTGCGCTGCTGACGCGAGCGGCGGGGGGCGGCCACTTGCGCG
TGGTCGAGTGGTGCCATGCCAACCAGATGGAAGGCGACATCGGTGCGGCG
ATTGACGCCGCCGCCGCAAACGGCCACTATAACGTCGTGGACTGGCTCCG
CACCCACAGCGCCAACAAGCGCGCGCGGACCGGCGGTGCCGGCACGACAA
GCCCATCTGCCACCGCCACCGCCGCCGCTGCCGCCGCCGCCGCCACAGCG
GCCGCCGCCAACGCGCCGATGGGCATGTTCGGCACGCCCTTCGGCAACTA
CACGCCGCTGAATGGCGTCTCGCTGCCGCGCGGGTTGCCCGCTGGCGGCG
CACTGCCGCACCCGCCTGAGCAGGATGGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21311:2..582-

>mRNA_P-wetherbeei_contig21311.1.1 ID=mRNA_P-wetherbeei_contig21311.1.1|Name=mRNA_P-wetherbeei_contig21311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig21311:2..582- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGAAGCGCAGGACGGGACATCGTATTCGGAGTGGACCAGCGGCGA
CGCGGCCGCGAGATGTGGCCACCTCTCGCTCATCAAGGAAAAAACCGCTT
TCGACAACGACCTGGAGTGGAGCCGACAGGCAATGGACGACGCGGCGGGC
GAGGGCAATTTGGAGGTGGTTAAGTGGCTTCATGCCCACAGACGAGAGGG
CTGCACGCGTGCGCTGCTGACGCGAGCGGCGGGGGGCGGCCACTTGCGCG
TGGTCGAGTGGTGCCATGCCAACCAGATGGAAGGCGACATCGGTGCGGCG
ATTGACGCCGCCGCCGCAAACGGCCACTATAACGTCGTGGACTGGCTCCG
CACCCACAGCGCCAACAAGCGCGCGCGGACCGGCGGTGCCGGCACGACAA
GCCCATCTGCCACCGCCACCGCCGCCGCTGCCGCCGCCGCCGCCACAGCG
GCCGCCGCCAACGCGCCGATGGGCATGTTCGGCACGCCCTTCGGCAACTA
CACGCCGCTGAATGGCGTCTCGCTGCCGCGCGGGTTGCCCGCTGGCGGCG
CACTGCCGCACCCGCCTGAGCAGGATGGC
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