mRNA_P-wetherbeei_contig21260.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21260.1.2
Unique NamemRNA_P-wetherbeei_contig21260.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A7S2W8X4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8X4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.650e-32
Identity = 74/154 (48.05%), Postives = 90/154 (58.44%), Query Frame = 1
Query:   22 PPPAEAVQLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHG-----SNGQQISHFAEALPDYQYVYQPAEAGEFLHLE-DPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV 465
            PPPA  + L  MTFNVW+  P +++  DPE RW RY  RL  L   +    PDI+ALQEVRHD   GP       S+  QI H  + LP YQYVY PA    +L  E   T R EEG A+LSR P+L+  ++LLPR   D  D HQR CLH +V
Sbjct:  217 PPPALPLSLTCMTFNVWNVNPPSYLYRDPEARWQRYSSRLDQLAQVVRSTNPDIIALQEVRHDDLFGPPNQPRASSSSSQIRHIVDRLPGYQYVYHPAMM--YLSRERGGTVREEEGPAILSRFPILNARHLLLPRDVHDGEDEHQRACLHAQV 368          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A3R6Y3F5_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y3F5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.920e-30
Identity = 70/153 (45.75%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   10 PPPAPPPAEAVQLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPD-YQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV 465
            PPP  P +   + ++ T+NVW+  P   VV     RW  Y  R+ HL+AF+ +   DIV LQEVR D   GP G + Q I H  E L   YQYVY+PA A  + + ++P   VEEG A+LS+HP+LS  YVLL RV  D  D+H R+CLH  V
Sbjct:  182 PPPDAPSSSFAEPKIATYNVWNVNPPG-VVYGHANRWSMYSRRMDHLVAFVRQVDADIVGLQEVRVDNSFGPVGHHAQ-IQHIMERLGTAYQYVYRPAMA--YPNDQNPMEHVEEGPAILSKHPILSSDYVLLSRVVDDPNDSHHRLCLHAAV 330          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A024GL07_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GL07_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.150e-28
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   43 QLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPDYQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEVRWCD-GDGELFVLH 504
            +LRV+T+NVW+  P+   +     RW  Y  R+  L   +      I+  QEVR D   G H  +  QI H A  LP+YQYVYQ A    ++   DP  RVEEG+A+ SR+P+LS  Y+LL R P D  D HQR+CLH  V   D G  +++V H
Sbjct:  223 KLRVLTYNVWNTNPSDETI----HRWEEYNRRMDALTDAVKRSEASIIGFQEVRFDASLG-HAGDHAQIQHLANRLPNYQYVYQAAM--HYIDRNDPLKRVEEGLAIFSRYPILSSDYILLHRDPNDPNDQHQRICLHAVVYVPDWGRVDVYVTH 370          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: W4H3S3_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3S3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.100e-28
Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 1
Query:   10 PPPAPPPAEAVQLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPD-YQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV---RWCDGDGELFVLH 504
            PPP  P +   + ++ T+NVW+  P   VV     RW  Y  R+ HL+AF+ +   DIV LQEVR D   GP G + Q I H  + L   YQYVY+PA A  + + ++P   VEEG A+LS+HP+L+  YVLL RV  D  D+H R+CLH  V    W  G  +++V H
Sbjct:  203 PPPDAPSSSFAEPKIATYNVWNVNPPG-VVYGHANRWSMYSRRMDHLVAFVRQVDADIVGLQEVRVDNSFGPVGHHAQ-IQHIMDRLGTAYQYVYRPAMA--YPNDQNPMEHVEEGPAILSKHPILTSDYVLLSRVVDDPNDSHHRLCLHAAVDVPHW--GVIDVYVTH 365          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A024UNI1_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNI1_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.230e-26
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   49 RVMTFNVWH-NQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPD-YQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEVR 468
            ++ ++NVW+ N P A  V     RW  Y +R+ HL++ + E   DIV LQEVR D   GP G + Q I H  E L   YQYVY+PA A  + + ++P   VEEG A+LS+HP+++  Y+LL RV  D  D HQR+CLH  VR
Sbjct:  219 KIASYNVWNVNPPEA--VYGRSNRWHMYTKRMDHLVSILREVNADIVGLQEVRVDSTFGPVGHHAQ-IEHIMERLGTAYQYVYRPAMA--YTNDQNPLEHVEEGPAILSKHPIVASDYILLSRVVDDPNDAHQRLCLHAVVR 355          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A485LIF7_9STRA (Aste57867_21787 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIF7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.350e-25
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 1
Query:   31 AEAVQLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALP--DYQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV 465
            A   + ++ T+NVW+  P   +V     RW  Y +R+ HL+ F+ E   DIV LQEVR D   GP G + Q I H  + +    YQYVY+PA +  +++   P  R+EEG A+LS+HP++   Y+LL RV  D  D+HQR+CLH  V
Sbjct:  207 AAVARPKIATYNVWNVNPPD-IVYGHHNRWAMYNKRMDHLVNFLDEVDADIVGLQEVRVDDTFGPVGDHAQ-IQHIVQRIKAKTYQYVYRPAMS--YVNENKPLERIEEGPAVLSKHPIVHSDYMLLSRVVDDPNDSHQRLCLHAAV 349          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: UPI00071203CD (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071203CD)

HSP 1 Score: 110 bits (274), Expect = 5.830e-25
Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   46 LRVMTFNVWHNQPAAWVVPD-PEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPDYQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEVR 468
            LR++++N W+  PA W +   P   W  Y +R+  +  +I E +PD++ LQE+R+D   G   ++  Q+SH A+ LP YQYVYQPA     +++E   +RVEEGVA+ SR P+  Q Y++L R   D+ D+HQRV LH  ++
Sbjct:  112 LRIVSYNAWNTMPATWFITGKPRFEW--YYKRMVLMTEYIQEVSPDVIVLQEIRYDETLGD-SAHRFQLSHIADLLPGYQYVYQPAN----MYVEHG-ARVEEGVAIFSRFPITHQDYLILSRDYLDKQDDHQRVVLHATIQ 245          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: A0A024UP86_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UP86_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.470e-24
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   49 RVMTFNVWH-NQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPD-YQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV 465
            ++ ++NVW+ N P A  V     RW  Y +R+ HL++ + E   DIV LQEVR D   GP G + Q I H  E L   YQYVY+PA A  + + ++P   VEEG A+LS+HP+++  Y+LL RV  D  D HQR+CLH  +
Sbjct:  219 KIASYNVWNVNPPEA--VYGRSNRWHMYTKRMDHLVSILREVNADIVGLQEVRVDSTFGPVGHHAQ-IEHIMERLGTAYQYVYRPAMA--YTNDQNPLEHVEEGPAILSKHPIVASDYILLSRVVDDPNDAHQRLCLHAVI 354          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: D8M9U4_BLAHO (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9U4_BLAHO)

HSP 1 Score: 107 bits (267), Expect = 4.000e-24
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   43 QLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPDYQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEV 465
            +LR++++N W+  PA+W +   E R+  + +R++ + A +    PDI+ LQE+R+D   G      Q + H  E LPDYQY++QPA         +  SRVEEGVA+LS+ P+  Q Y+LL R   D+ D+HQR+ LH ++
Sbjct:  185 RLRIVSYNAWNTMPASWFITG-ERRFDWFYKRMQLMAANLRAADPDIIVLQEIRYDETLGDQRRRFQ-LRHLTELLPDYQYIFQPANM-----YNEHGSRVEEGVAVLSKFPIRRQDYILLSRDYTDKQDDHQRLVLHAQI 318          
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Match: C3Y3J5_BRAFL (Endo/exonuclease/phosphatase domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Y3J5_BRAFL)

HSP 1 Score: 105 bits (261), Expect = 3.340e-23
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   46 LRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHLIAFIVEEAPDIVALQEVRHDVGCG-PHGSNGQQISHFAEALPDYQYVYQPAEAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVCLHVEVRWCD-GDGELFVLH 504
            L++ ++NVW+          PE R   Y ER +HL   + + A DI+ALQEVR     G P G N  QI HF   LP YQYV+QPA +    + E    RVEEGVA++S+ P+++  Y+LL R   D  D HQR+CLH E+     G   LFV H
Sbjct:  246 LKIASYNVWNFN------GGPEGRVKAYVERAQHLGQVLADCAADIIALQEVRFAYNRGGPLGPN--QIQHFTHYLPGYQYVFQPAMS----YPESILGRVEEGVAIISKFPIITHDYILLYRNASDSEDFHQRICLHAEIETPYLGLVHLFVTH 388          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21260.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W8X4_9STRA1.650e-3248.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R6Y3F5_9STRA7.920e-3045.75Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A024GL07_9STRA1.150e-2841.94Endo/exonuclease/phosphatase domain-containing pro... [more]
W4H3S3_9STRA3.100e-2842.60Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A024UNI1_9STRA8.230e-2645.07Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A485LIF7_9STRA1.350e-2541.50Aste57867_21787 protein n=1 Tax=Aphanomyces stella... [more]
UPI00071203CD5.830e-2540.85hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A024UP86_9STRA2.470e-2443.97Endo/exonuclease/phosphatase domain-containing pro... [more]
D8M9U4_BLAHO4.000e-2439.01Endo/exonuclease/phosphatase domain-containing pro... [more]
C3Y3J5_BRAFL3.340e-2342.58Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21260contigP-wetherbeei_contig21260:189..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T012641
PFAMsExo_endo_phos
Model size510
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.88e-33
EggNOG OGs2909S@1|root,2R74U@2759|Eukaryota,1MASB@121069|Pythiales
DescriptionEndonuclease exonuclease phosphatase. Source PGD
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.3945208-CDS-P-wetherbeei_contig21260:188..4551683186220.3945208-CDS-P-wetherbeei_contig21260:188..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21260 189..455 -
1683186220.4043941-CDS-P-wetherbeei_contig21260:706..9491683186220.4043941-CDS-P-wetherbeei_contig21260:706..949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21260 707..949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21260.1.2prot_P-wetherbeei_contig21260.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21260 189..949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21260.1.2

>prot_P-wetherbeei_contig21260.1.2 ID=prot_P-wetherbeei_contig21260.1.2|Name=mRNA_P-wetherbeei_contig21260.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
SLLPPPAPPPAEAVQLRVMTFNVWHNQPAAWVVPDPEERWLRYRERLRHL
IAFIVEEAPDIVALQEVRHDVGCGPHGSNGQQISHFAEALPDYQYVYQPA
EAGEFLHLEDPTSRVEEGVALLSRHPVLSQGYVLLPRVPGDRADNHQRVC
LHVEVRWCDGDGELFVLHC*
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mRNA from alignment at P-wetherbeei_contig21260:189..949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21260.1.2 ID=mRNA_P-wetherbeei_contig21260.1.2|Name=mRNA_P-wetherbeei_contig21260.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=761bp|location=Sequence derived from alignment at P-wetherbeei_contig21260:189..949- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTCCTGCCGCCGCCGGCGCCGCCACCAGCTGAAGCGGTGCAGCTACG GGTAATGACTTTCAACGTTTGGCACAACCAGCCGGCGGCGTGGGTTGTAC CCGATCCGGAGGAGCGGTGGCTGCGCTATCGTGAGCGGCTCCGGCACTTG ATTGCTTTCATTGTGGAAGAGGCGCCGGACATCGTCGCCCTGCAGGAAGT CCGGCACGACGTCGGCTGCGGCCCTCATGGAAGCAACGGTCAGGTGCGTC CTCGCTTGGAGGCAGCATGCGCCGTCCGCGTTCAATGTATGTGAAAGGTT GTCTCGGAGTTCATGTTAGCAAATATTTCAGAGCATCACTGGTTTTGTTT TCTTCCCCCGAATGGTTTACATTCGAGTTTCCTGTAGCGGCTCTTCTTTA ATGGAACCTATACTGAAGGGTGGCAATTCCATTGGCTTCCCTTTCTCCTT CGGCTTCTCACTCCTCTTCTGCTGCCTCCCTGCGTCATTAAAAGCAGATC TCCCACTTTGCCGAGGCGCTGCCCGATTACCAATACGTCTACCAGCCTGC CGAGGCCGGCGAGTTTCTCCACCTGGAGGATCCGACGTCGCGTGTGGAGG AGGGTGTGGCGCTGCTCTCCCGCCATCCAGTCCTGTCGCAGGGCTACGTC TTGCTGCCGCGCGTTCCGGGGGACAGGGCGGACAACCACCAGCGGGTCTG CCTGCACGTGGAGGTGCGGTGGTGTGACGGAGATGGGGAGCTTTTTGTTT TGCACTGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21260:189..949-

>mRNA_P-wetherbeei_contig21260.1.2 ID=mRNA_P-wetherbeei_contig21260.1.2|Name=mRNA_P-wetherbeei_contig21260.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig21260:189..949- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTCCTGCCGCCGCCGGCGCCGCCACCAGCTGAAGCGGTGCAGCTACG
GGTAATGACTTTCAACGTTTGGCACAACCAGCCGGCGGCGTGGGTTGTAC
CCGATCCGGAGGAGCGGTGGCTGCGCTATCGTGAGCGGCTCCGGCACTTG
ATTGCTTTCATTGTGGAAGAGGCGCCGGACATCGTCGCCCTGCAGGAAGT
CCGGCACGACGTCGGCTGCGGCCCTCATGGAAGCAACGGTCAGCAGATCT
CCCACTTTGCCGAGGCGCTGCCCGATTACCAATACGTCTACCAGCCTGCC
GAGGCCGGCGAGTTTCTCCACCTGGAGGATCCGACGTCGCGTGTGGAGGA
GGGTGTGGCGCTGCTCTCCCGCCATCCAGTCCTGTCGCAGGGCTACGTCT
TGCTGCCGCGCGTTCCGGGGGACAGGGCGGACAACCACCAGCGGGTCTGC
CTGCACGTGGAGGTGCGGTGGTGTGACGGAGATGGGGAGCTTTTTGTTTT
GCACTGTTAG
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