mRNA_P-wetherbeei_contig2123.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2123.2.1
Unique NamemRNA_P-wetherbeei_contig2123.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2123.2.1 vs. uniprot
Match: A0A835YRJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.130e-15
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:  435 APQSFVDTLGTERDMTMDEQLDAIRREIQMNAAQALEEARATGPVAETGATDAGGGSGNSSEEESSDADFDKYR---PPGFMDEVNNILWPGPRRSAQLTVLTFVAQFFFVLWIIAINVSSKGLPFLLDNIT 821
            A   FVD  G  ++M++DEQ++A+RRE+   A +A +E     P          GG      EE +D D D+     P GF+DE   ILWPG RR  QL+V+T  AQ  F  WI+AIN  S  +P L DN T
Sbjct:   67 AQSQFVDIAGA-KEMSLDEQIEAMRREVAEQAGEAAKEEEVVVP----------GG------EELTDEDLDESDFPLPQGFVDEGKKILWPGSRRLLQLSVITLTAQVLFFFWIMAINDVSHNIPTLADNFT 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2123.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRJ5_9STRA8.130e-1540.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2123contigP-wetherbeei_contig2123:3549..4686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size971
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001620.1
Cds size753
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.6233323-UTR-P-wetherbeei_contig2123:3548..36501683186219.6233323-UTR-P-wetherbeei_contig2123:3548..3650Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2123 3549..3650 -
1683186219.650905-UTR-P-wetherbeei_contig2123:4570..46861683186219.650905-UTR-P-wetherbeei_contig2123:4570..4686Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2123 4571..4686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.633301-CDS-P-wetherbeei_contig2123:3650..41591683186219.633301-CDS-P-wetherbeei_contig2123:3650..4159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2123 3651..4159 -
1683186219.6423602-CDS-P-wetherbeei_contig2123:4326..45701683186219.6423602-CDS-P-wetherbeei_contig2123:4326..4570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2123 4327..4570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2123.2.1prot_P-wetherbeei_contig2123.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2123 3651..4570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2123.2.1

>prot_P-wetherbeei_contig2123.2.1 ID=prot_P-wetherbeei_contig2123.2.1|Name=mRNA_P-wetherbeei_contig2123.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MACERDEHWRYRLFSSLSNTLPCLTPTRCSLYRRQAFRMAPKRPLQTVLV
VTMTCACAAFAPRLALHRTPRCSSWRRVASRGRAIRPPLLRMEADVDERE
PIPMPAAPQSFVDTLGTERDMTMDEQLDAIRREIQMNAAQALEEARATGP
VAETGATDAGGGSGNSSEEESSDADFDKYRPPGFMDEVNNILWPGPRRSA
QLTVLTFVAQFFFVLWIIAINVSSKGLPFLLDNITDAVTGLINSGVSGGA
*
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mRNA from alignment at P-wetherbeei_contig2123:3549..4686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2123.2.1 ID=mRNA_P-wetherbeei_contig2123.2.1|Name=mRNA_P-wetherbeei_contig2123.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-wetherbeei_contig2123:3549..4686- (Phaeothamnion wetherbeei SAG_119_79)
GATCCCCAGCCAAATTCTTCGTCCTCACTGCTTTCGTAGCGGTGCGTGAC
TGAGTCTTGGTCTGTTCTTCGCTTGTTTTTAATCGCCTCGGAGAAAAATG
GCTTTCTCCTGACACCATGGCATGCGAACGAGATGAGCATTGGCGCTATA
GGTTATTCTCTTCGCTGTCTAACACGTTGCCTTGCTTAACACCAACGCGA
TGTTCGCTGTACCGTCGGCAGGCCTTCCGAATGGCGCCAAAACGCCCTCT
CCAGACTGTCTTGGTTGTGACAATGACATGTGCATGCGCAGCCTTCGCGC
CACGGCTCGCTCTTCATCGGACGCCGCGCTGTTCATCATGGCGACGCGTA
GCATCACGAGGTACAGGAAGTCTATGGCAAAACGTGAAATGATAGTTTTT
GTGGAGAGGATAGAAGGGCCCTTCCCATTTTGTTCGCATTTCCCCAAGCC
AACGAAAAGCACACGAACGAGCCTTTCCACATTATGCTAACGAAAAGTAT
ACGAACGAGTCTTTCGTGTGCTCGCAGGACGTGCGATACGTCCCCCACTG
CTTCGGATGGAGGCCGACGTCGACGAGCGAGAGCCCATCCCCATGCCGGC
GGCGCCGCAGAGCTTCGTGGACACGCTGGGGACGGAACGGGATATGACTA
TGGACGAGCAGCTCGACGCTATTCGGCGCGAGATCCAGATGAACGCGGCG
CAGGCCCTGGAGGAGGCACGAGCCACCGGGCCTGTGGCAGAAACCGGCGC
AACTGATGCCGGCGGCGGCAGCGGCAACAGCAGCGAGGAGGAGAGCAGCG
ACGCCGACTTCGACAAGTATCGGCCGCCGGGGTTCATGGACGAGGTGAAC
AACATTCTGTGGCCCGGGCCGCGGCGGTCGGCGCAGCTGACTGTGCTGAC
TTTTGTGGCGCAGTTCTTCTTCGTGCTGTGGATCATCGCCATCAACGTCT
CGTCCAAAGGCCTCCCGTTCTTGCTCGACAACATCACCGACGCCGTCACG
GGCCTCATTAACAGTGGTGTGTCGGGGGGAGCGTGATTGTCCGCCTTCTT
TTTGTCGTGCATTCATTATACAGCTCAAATGAGAGAAAAAATAGAGCCAT
AAACAAAAGAATCATGCTTGAAGACACAAAGAAGACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2123:3549..4686-

>mRNA_P-wetherbeei_contig2123.2.1 ID=mRNA_P-wetherbeei_contig2123.2.1|Name=mRNA_P-wetherbeei_contig2123.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig2123:3549..4686- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGCGAACGAGATGAGCATTGGCGCTATAGGTTATTCTCTTCGCT
GTCTAACACGTTGCCTTGCTTAACACCAACGCGATGTTCGCTGTACCGTC
GGCAGGCCTTCCGAATGGCGCCAAAACGCCCTCTCCAGACTGTCTTGGTT
GTGACAATGACATGTGCATGCGCAGCCTTCGCGCCACGGCTCGCTCTTCA
TCGGACGCCGCGCTGTTCATCATGGCGACGCGTAGCATCACGAGGACGTG
CGATACGTCCCCCACTGCTTCGGATGGAGGCCGACGTCGACGAGCGAGAG
CCCATCCCCATGCCGGCGGCGCCGCAGAGCTTCGTGGACACGCTGGGGAC
GGAACGGGATATGACTATGGACGAGCAGCTCGACGCTATTCGGCGCGAGA
TCCAGATGAACGCGGCGCAGGCCCTGGAGGAGGCACGAGCCACCGGGCCT
GTGGCAGAAACCGGCGCAACTGATGCCGGCGGCGGCAGCGGCAACAGCAG
CGAGGAGGAGAGCAGCGACGCCGACTTCGACAAGTATCGGCCGCCGGGGT
TCATGGACGAGGTGAACAACATTCTGTGGCCCGGGCCGCGGCGGTCGGCG
CAGCTGACTGTGCTGACTTTTGTGGCGCAGTTCTTCTTCGTGCTGTGGAT
CATCGCCATCAACGTCTCGTCCAAAGGCCTCCCGTTCTTGCTCGACAACA
TCACCGACGCCGTCACGGGCCTCATTAACAGTGGTGTGTCGGGGGGAGCG
TGA
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