mRNA_P-wetherbeei_contig2119.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2119.2.1
Unique NamemRNA_P-wetherbeei_contig2119.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: D7FXF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.620e-15
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  236 PAAPYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            P  PY+WE GG   + W+ K  H++H+ G + + GAE +GEVVAN LGL +SKYQYVIDA+E ++ R+
Sbjct:   27 PVEPYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIRE 94          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A7S2RVN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVN4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.220e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  245 PYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQAR 436
            PYYWE    + +P +QK+WH   + G+R   G E +GEVVA++LGL ES+YQ+VIDA E E+AR
Sbjct:   51 PYYWELVDVQDVPAWQKAWHISRWTGERVFRGMEFVGEVVADILGLNESRYQWVIDAAENEKAR 114          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A6G0XJZ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJZ9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.460e-11
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  212 DDSAAAMAPAAPYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            +DS A +  AAPYYWE   T  + W  K WH  H+ G +   G E  GEVVA  LGLT SKY ++++  E ++  K
Sbjct:    3 EDSEAPIE-AAPYYWETSSTEDVGWSTKVWHWTHWTGDKIFTGMEFGGEVVATFLGLTRSKYDWILETKERDEHEK 77          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A7S2V0M7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0M7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.450e-8
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  242 APYYWEAGGT--RRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQ 430
            APYYWE   +    LP  ++ +HN ++  ++ +DG E  GE VA++LGL +S+YQYVIDA+E ++
Sbjct:   48 APYYWEEPSSTDNPLPLGRRVFHNFYWAAEKIVDGMEFAGECVAHMLGLNQSQYQYVIDAMEIDR 112          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A1V9YAL0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAL0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.940e-7
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 2
Query:  248 YYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            YYW++      P   K WH  H+ G++  +G E  GEV+A+ LGLT SKY ++++A E ++  K
Sbjct:   14 YYWDSVDAASTPATTKVWHWTHWSGKKAFEGMEFGGEVIASFLGLTRSKYDWILEAKERDEQEK 77          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A067CPU0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CPU0_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 2.270e-7
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  212 DDSAAAMAPAAPYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            DD          YYW+A  +   P   K+WH  ++ GQ+ L+G E  GEV+A  LGLT SKY +++++ E ++  K
Sbjct:    8 DDDECKEGEKELYYWDA--SDEAPLTTKAWHWTYWSGQKVLEGMEFGGEVIATFLGLTRSKYDWILESKERDEQEK 81          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A7S2CUC7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.910e-7
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  245 PYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARKE 442
            PYYW+  G    P ++K+ H   ++G +   G E IG +VA+L G+ +SKYQYVIDA++ ++ R++
Sbjct:   43 PYYWQLVGYNP-PLHRKASHIAWWFGSKVFYGMEFIGAIVADLAGMNQSKYQYVIDAMKEDERREQ 107          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A485L0M6_9STRA (Aste57867_13564 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.600e-6
Identity = 33/89 (37.08%), Postives = 43/89 (48.31%), Query Frame = 2
Query:  206 GDDDSAAAMAPAA-------PYYWEAG----GTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            G D++     PAA       PYYWE G        +    K+WH   + GQ+   G E  GEVVA  LGLT SKY ++++  E E   K
Sbjct:    5 GPDNAPPPTVPAADEEEHVEPYYWETGTGYDAAAEVAVSTKAWHWTCWTGQKVFQGMEFGGEVVATFLGLTRSKYDWILETKEREDQEK 93          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: T0QBK3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK3_SAPDV)

HSP 1 Score: 55.1 bits (131), Expect = 5.170e-6
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 2
Query:  248 YYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARK 439
            YYW++    RL    K+WH  ++ G++  +G E  GEV+A  LGLT SKY +++++ E ++  K
Sbjct:   21 YYWDSSEDARLT--TKAWHWTYWSGKKVYEGMEFGGEVIATFLGLTRSKYDWILESRERDEQEK 82          
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Match: A0A0P1B079_PLAHL (FAM177 family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B079_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 1.020e-5
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 2
Query:  257 EAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTESKYQYVIDAIETEQARKE 442
            E  G R LP +   W  + + G +T D  +  GEVVAN LGL +SKYQ++IDA E E+ +K+
Sbjct:   37 ECSGVRLLPEFVWDW--ICWSGNKTFDILDFAGEVVANFLGLNQSKYQWIIDAQEREEQKKQ 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2119.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FXF0_ECTSI1.620e-1551.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RVN4_9STRA4.220e-1353.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XJZ9_9STRA4.460e-1143.42Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2V0M7_9STRA3.450e-844.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9YAL0_9STRA1.940e-739.06Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CPU0_SAPPC2.270e-736.84Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2CUC7_9STRA4.910e-740.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A485L0M6_9STRA1.600e-637.08Aste57867_13564 protein n=1 Tax=Aphanomyces stella... [more]
T0QBK3_SAPDV5.170e-637.50Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A0P1B079_PLAHL1.020e-545.16FAM177 family n=1 Tax=Plasmopara halstedii TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2119contigP-wetherbeei_contig2119:1570..2431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008614458.1
PFAMsFAM177
Model size862
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.15e-07
EggNOG OGs2E7AP@1|root,2SDXF@2759|Eukaryota
Ec32 ortholog descriptionFAM177 family
Ec32 orthologEc-07_002960.1
DescriptionFAM177 family
Cds size597
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.557143-UTR-P-wetherbeei_contig2119:1569..17461683186218.557143-UTR-P-wetherbeei_contig2119:1569..1746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2119 1570..1746 -
1683186218.577128-UTR-P-wetherbeei_contig2119:2343..24311683186218.577128-UTR-P-wetherbeei_contig2119:2343..2431Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2119 2344..2431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.5680225-CDS-P-wetherbeei_contig2119:1746..23431683186218.5680225-CDS-P-wetherbeei_contig2119:1746..2343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2119 1747..2343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2119.2.1prot_P-wetherbeei_contig2119.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2119 1747..2343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2119.2.1

>prot_P-wetherbeei_contig2119.2.1 ID=prot_P-wetherbeei_contig2119.2.1|Name=mRNA_P-wetherbeei_contig2119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=199bp
MAAVGQQRASPRVSDVELSDIEVATTARIDNYGTLSPTGGDDDSAAAMAP
AAPYYWEAGGTRRLPWYQKSWHNVHYYGQRTLDGAELIGEVVANLLGLTE
SKYQYVIDAIETEQARKEQAEREEMERNELAEDTAAAAANSGSGAAGAFV
VSGVSGVSGGCTARAGSARSSPNQLGRGASSRSPGAAATRALEAGAQT*
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mRNA from alignment at P-wetherbeei_contig2119:1570..2431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2119.2.1 ID=mRNA_P-wetherbeei_contig2119.2.1|Name=mRNA_P-wetherbeei_contig2119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=862bp|location=Sequence derived from alignment at P-wetherbeei_contig2119:1570..2431- (Phaeothamnion wetherbeei SAG_119_79)
TTGTGATTTGGAGCGCGGCCATCGAATTAGGCCGAAATCGCAGCCTTCTG CCAGCATCCGCCACCGCCGCTAAGCGGCATCCGCAACAATGGCCGCAGTC GGGCAACAACGCGCCTCACCTAGGGTGAGCGATGTGGAGCTCAGCGATAT TGAGGTCGCGACGACGGCGCGCATAGACAACTACGGCACCCTCAGCCCCA CCGGCGGCGACGACGACAGCGCGGCGGCGATGGCGCCGGCGGCCCCGTAC TACTGGGAGGCCGGCGGCACCCGGCGCCTCCCATGGTACCAAAAATCGTG GCACAACGTCCATTACTACGGCCAGCGGACGCTCGACGGCGCGGAGCTCA TTGGAGAGGTCGTCGCCAACCTGCTGGGCCTGACGGAGAGCAAGTACCAG TACGTCATCGACGCGATCGAGACGGAGCAGGCGCGCAAGGAGCAGGCGGA GCGGGAGGAAATGGAGCGGAACGAGCTGGCAGAAGACACCGCCGCCGCTG CTGCGAACAGTGGCAGCGGCGCCGCCGGCGCCTTCGTCGTCAGCGGCGTC AGCGGCGTCAGCGGCGGCTGCACTGCGCGGGCAGGCTCGGCGCGATCGTC GCCAAACCAGCTGGGTCGTGGCGCGTCGTCTCGCAGCCCCGGCGCCGCCG CCACCCGCGCACTCGAGGCCGGCGCACAGACCTGAGGAGCCGCTGCGGCG CCGTGCTGACAGAAATGAGGATACGGCGGTGCGCGATTGAAGATGCTGTC GGCTGCGGTTGTTACTGCGCCCAGAACTCCCACAGGCCACGAGGGTAGAT GTTGATTACAGTATTTCTTTCGGTCTGTTTACCCAATTAATTGTGATANC CCCACATTGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2119:1570..2431-

>mRNA_P-wetherbeei_contig2119.2.1 ID=mRNA_P-wetherbeei_contig2119.2.1|Name=mRNA_P-wetherbeei_contig2119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig2119:1570..2431- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCAGTCGGGCAACAACGCGCCTCACCTAGGGTGAGCGATGTGGA
GCTCAGCGATATTGAGGTCGCGACGACGGCGCGCATAGACAACTACGGCA
CCCTCAGCCCCACCGGCGGCGACGACGACAGCGCGGCGGCGATGGCGCCG
GCGGCCCCGTACTACTGGGAGGCCGGCGGCACCCGGCGCCTCCCATGGTA
CCAAAAATCGTGGCACAACGTCCATTACTACGGCCAGCGGACGCTCGACG
GCGCGGAGCTCATTGGAGAGGTCGTCGCCAACCTGCTGGGCCTGACGGAG
AGCAAGTACCAGTACGTCATCGACGCGATCGAGACGGAGCAGGCGCGCAA
GGAGCAGGCGGAGCGGGAGGAAATGGAGCGGAACGAGCTGGCAGAAGACA
CCGCCGCCGCTGCTGCGAACAGTGGCAGCGGCGCCGCCGGCGCCTTCGTC
GTCAGCGGCGTCAGCGGCGTCAGCGGCGGCTGCACTGCGCGGGCAGGCTC
GGCGCGATCGTCGCCAAACCAGCTGGGTCGTGGCGCGTCGTCTCGCAGCC
CCGGCGCCGCCGCCACCCGCGCACTCGAGGCCGGCGCACAGACCTGA
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