mRNA_P-wetherbeei_contig21184.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21184.1.1
Unique NamemRNA_P-wetherbeei_contig21184.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.120e-43
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKMLAGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G++ICQ+GAF+AGSHT+ I TE TKM+AGF GGEGF+LQRL+G GDAFVKASG LI+REL  GE +RV+SGS+VAF  SVQYDVQT+PGFKN VFGG+G
Sbjct:   95 GEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEG 193
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.390e-33
Identity = 59/100 (59.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKMLA-GFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G ++CQKGA +  SHTV I TE TK  + GF GGEGF+LQ L G GD FVKA G++I++EL PGE +R++SGS+VAF  +V+YD+Q +PGFKN +FGG+G
Sbjct:  147 GKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEG 246
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A7S2FBI8_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBI8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.780e-33
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKML-AGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G ++CQKGAF+AGS TV I    +K   AGF GGEGF+LQ+LSG GDAFVKA+G LI +EL+ GE +RV SGSIVAF+GSV+YDVQ + G KN VFGG+G
Sbjct:  164 GGLMCQKGAFLAGSDTVNIEMGFSKSFTAGFFGGEGFVLQKLSGEGDAFVKATGALISKELKAGEKLRVTSGSIVAFEGSVEYDVQMMTGMKNVVFGGEG 263
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: H3G7Y8_PHYRM (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Y8_PHYRM)

HSP 1 Score: 120 bits (302), Expect = 2.590e-32
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    7 MICQKGAFVAGSHTVQITTEVTKMLA-GFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            +ICQKGAF+ GS TV I  E  K    GF GGEGFILQRL+GSGD  V+ASGTLI R+L+PGEV+R++SG +VAF+ SV YD+  + G KN +FGG+G
Sbjct:   84 IICQKGAFLCGSDTVNIEMEFAKKFGVGFFGGEGFILQRLTGSGDVLVRASGTLIERDLQPGEVLRISSGCLVAFESSVHYDITMMKGAKNVLFGGEG 181
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A6U3TE36_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TE36_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.380e-32
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    7 MICQKGAFVAGSHTVQITTEVTKMLA-GFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            +ICQKGA++AGSHTV I  E  K    GF GGEGF+LQ L+G GD FVKA GTLIR++L+ GE +RV+SGS+VAF  SV +DV T+PGFKN +FGG+G
Sbjct:  173 IICQKGAYLAGSHTVDIEMEFAKKFTTGFFGGEGFVLQSLNGDGDVFVKAGGTLIRKDLQQGETLRVSSGSLVAFTQSVDFDVTTMPGFKNVLFGGEG 270
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A662Y0X0_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0X0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.350e-32
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKMLAGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G +ICQKGAF+ GS TV I     K   GF GGEGFILQRL+GSGD  V+ASGTLI R+L+PGEV+R++SG +VAF+ SV YD+  + G KN +FGG+G
Sbjct:   65 GSIICQKGAFLCGSDTVNIEMFAKKFGIGFFGGEGFILQRLTGSGDVLVRASGTLIERDLQPGEVLRISSGCLVAFEPSVHYDITMMKGAKNVLFGGEG 163
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A7S0C9P2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=6 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9P2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.540e-32
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTK-MLAGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G ++CQKGA +  SHT+ I  E  K M AGF GGEGF+LQ L+G GD FVKA GTLIRR+L  GE++R++SG +V F   V+YD+Q +PG KN +FGG+G
Sbjct:  137 GKIVCQKGALLCASHTINIEMEFAKKMTAGFFGGEGFVLQSLTGDGDVFVKAGGTLIRRDLGDGEILRISSGCLVGFSNGVEYDIQMMPGIKNVMFGGEG 236
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A7S4VC90_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VC90_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.380e-31
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKML-AGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G ++CQKGA +  SHT+ I  E  K   AGF GGEGF+LQ L+G GD FVKA GT+IR+ELE GE +R++SG +V F   V +DVQ +PGFKN +FGG+G
Sbjct:   76 GKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEG 175
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A835Z6E3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.900e-31
Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKMLAGFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G ++CQ+GAF+AGS T+ I+TEVT+ +AG  GGEGF+LQRLSG GDAFV A G ++RR+L+ GEV+RV +GS+V F  +V Y V T  G KN VFG  G
Sbjct:  136 GSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDG 234
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BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Match: A0A8K1C5A7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A7_PYTOL)

HSP 1 Score: 123 bits (309), Expect = 1.940e-31
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 GDMICQKGAFVAGSHTVQITTEVTKMLA-GFMGGEGFILQRLSGSGDAFVKASGTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG 297
            G +ICQKGAF+ GS TV I  E  K    GF GGEGFILQRL+GSGDA V+ASG LI REL+PGEV+R++SG +VAF+ SV YD+  + G KN +FGG+G
Sbjct:  205 GSIICQKGAFLCGSDTVNIEMEFAKKFGVGFFGGEGFILQRLTGSGDALVRASGALIERELQPGEVLRISSGCLVAFEPSVHYDITMMKGVKNVLFGGEG 304
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U0_ECTSI3.120e-4373.74Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2WLF3_9STRA2.390e-3359.00Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2FBI8_9STRA3.780e-3365.00Altered inheritance of mitochondria protein 24, mi... [more]
H3G7Y8_PHYRM2.590e-3261.22Altered inheritance of mitochondria protein 24, mi... [more]
A0A6U3TE36_9STRA3.380e-3263.27Altered inheritance of mitochondria protein 24, mi... [more]
A0A662Y0X0_9STRA5.350e-3260.61Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S0C9P2_9STRA8.540e-3257.00Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4VC90_9STRA1.380e-3157.00Altered inheritance of mitochondria protein 24, mi... [more]
A0A835Z6E3_9STRA1.900e-3158.59Altered inheritance of mitochondria protein 24, mi... [more]
A0A8K1C5A7_PYTOL1.940e-3162.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21184contigP-wetherbeei_contig21184:6..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1U0
PFAMsAIM24
Model size297
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.12e-43
EggNOG OGsCOG2013@1|root,2QVFQ@2759|Eukaryota
DescriptionMitochondrial biogenesis AIM24
Cds size291
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.4367816-UTR-P-wetherbeei_contig21184:5..111683186218.4367816-UTR-P-wetherbeei_contig21184:5..11Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21184 6..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.4482715-CDS-P-wetherbeei_contig21184:11..691683186218.4482715-CDS-P-wetherbeei_contig21184:11..69Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21184 12..69 +
1683186218.4573274-CDS-P-wetherbeei_contig21184:431..4841683186218.4573274-CDS-P-wetherbeei_contig21184:431..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21184 432..484 +
1683186218.467131-CDS-P-wetherbeei_contig21184:686..8421683186218.467131-CDS-P-wetherbeei_contig21184:686..842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21184 687..842 +
1683186218.4769711-CDS-P-wetherbeei_contig21184:1157..11811683186218.4769711-CDS-P-wetherbeei_contig21184:1157..1181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21184 1158..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21184.1.1prot_P-wetherbeei_contig21184.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21184 12..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21184.1.1

>prot_P-wetherbeei_contig21184.1.1 ID=prot_P-wetherbeei_contig21184.1.1|Name=mRNA_P-wetherbeei_contig21184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MICQKGAFVAGSHTVQITTEVTKMLAGFMGGEGFILQRLSGSGDAFVKAS
GTLIRRELEPGEVIRVASGSIVAFQGSVQYDVQTVPGFKNAVFGGQG
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mRNA from alignment at P-wetherbeei_contig21184:6..1181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21184.1.1 ID=mRNA_P-wetherbeei_contig21184.1.1|Name=mRNA_P-wetherbeei_contig21184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1176bp|location=Sequence derived from alignment at P-wetherbeei_contig21184:6..1181+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACATGATCTGCCAGAAGGGGGCTTTCGTCGCCGGAAGCCACACCGT
ACAAATCACCACAGGTCCGGCGGTCGGTTTGCATGGTGGCGACGTCGCGG
CGGAGGCCGAGCAAGGCGGCGCGCGGTGGCGGCTTGCAACGGTGATGACG
ATGGCGGCGATTGTGGTGCGCGCCAGTGGCGGCGGCGGTGGCGGCGCGCT
GTGGCGGTGGCGACGGCCGTAGTGACGGCGACGACGGCGGCTGCGTTGCT
GCTGGTGATGGTGGCAGTGGCGGTGGCAAACCAGGCGGATGGATAGTTGT
GGCGGTTTCTGCGACAGTGGTGGGGCAGCGGCGCGGCTGGCATCGGCCGC
TGCGTACATCTCATGCTTCTTCCACCCGACACTCCACTCGATGCTTGTGC
TCTTTTGCTTCGTACCTTCACTTCAGAGGTGACCAAGATGCTGGCTGGCT
TTATGGGTGGAGAGGGCTTCATCCTCCAGGTGCGCCGTCGACTATGCAGG
CCCACGCTTTCCATGCTGCTTTCTCTTTTCTTTAGATCGTGTTGAGAGAA
CATGAGATTTGCGCTCCTCTTTCCTTATTTCAAAGTTTACAAGCCAACTG
CGGCGCTGTGCTCATTTTCAAGCGTACTTGGTGGTAGTCCCACCGCCCGC
TGCCGCCGTTTTTCCACCCTTGCGCGCGCAGCGGCTGTCTGGAAGCGGAG
ACGCTTTTGTAAAGGCGAGCGGCACGCTGATCCGGAGGGAGCTTGAGCCC
GGAGAGGTGATCCGTGTGGCATCGGGCAGCATCGTCGCCTTCCAGGGCAG
TGTCCAGTACGACGTGCAGACCGTGCCCGGCTTCAAGGTGTGGTGAAGTG
GCTCGCTGCCCGTTACAGCTGCAAGCGCTCATTTTGTGTCGTGACGCTAC
ATCTACCGGCTTCGTGCTTCCGTTGTTTTTCGGTTGTCATTAAAGCCGTT
GAGCGCGCGGCGCGATAACTGCCTGTCACGATCGTGCTTGCATGGCCGAG
AATGGCCGATGGCTTCGCTCTCAATCTGAGCCAACGTTCATGCGGATTGG
CTGTCGGTGGCATTGCGTGTTGACCTGACCGCTTACTTTCCCTGCTTCTC
ATGTATTAAATTGGCTTGAATCGCGACGCGCTCCCTTTACCGGCGGCGTC
AGAATGCTGTCTTTGGAGGTCAAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21184:6..1181+

>mRNA_P-wetherbeei_contig21184.1.1 ID=mRNA_P-wetherbeei_contig21184.1.1|Name=mRNA_P-wetherbeei_contig21184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig21184:6..1181+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTGCCAGAAGGGGGCTTTCGTCGCCGGAAGCCACACCGTACAAAT
CACCACAGAGGTGACCAAGATGCTGGCTGGCTTTATGGGTGGAGAGGGCT
TCATCCTCCAGCGGCTGTCTGGAAGCGGAGACGCTTTTGTAAAGGCGAGC
GGCACGCTGATCCGGAGGGAGCTTGAGCCCGGAGAGGTGATCCGTGTGGC
ATCGGGCAGCATCGTCGCCTTCCAGGGCAGTGTCCAGTACGACGTGCAGA
CCGTGCCCGGCTTCAAGAATGCTGTCTTTGGAGGTCAAGGA
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