mRNA_P-wetherbeei_contig21166.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21166.1.1
Unique NamemRNA_P-wetherbeei_contig21166.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A6I3F1A0_9ACTN (Molybdopterin synthase sulfur carrier subunit n=3 Tax=root TaxID=1 RepID=A0A6I3F1A0_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 2.600e-47
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRP++GG+S VQVEG  L++VI NLDA HPGF+DRLLDESGAMRKFVNLFVADDDVRYLDGL+T VP GETVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPMAGGSSTVQVEGATLAEVITNLDAVHPGFRDRLLDESGAMRKFVNLFVADDDVRYLDGLNTVVPAGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A7K0LC61_9ACTN (Molybdopterin synthase sulfur carrier subunit n=3 Tax=root TaxID=1 RepID=A0A7K0LC61_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 2.650e-45
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGGAS VQVEGD L+DV+  LDA HPGF DRLLD++G + KFVN+FV+DDDVRY+DGL+TKVP GETVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGASTVQVEGDTLADVLKGLDAQHPGFSDRLLDDAGNLHKFVNVFVSDDDVRYMDGLNTKVPAGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A6I2X194_9ACTN (Molybdopterin synthase sulfur carrier subunit n=2 Tax=root TaxID=1 RepID=A0A6I2X194_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.190e-43
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGG + V VEG  L++V+ NLDA+HPGF DRLLD++GA+RKFVN+FV+DDDVRYLDGL+T VP GETVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGNATVSVEGATLAEVLKNLDASHPGFSDRLLDDNGALRKFVNVFVSDDDVRYLDGLNTAVPAGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A5Q2RHV9_9ACTN (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RHV9_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.190e-43
Identity = 70/91 (76.92%), Postives = 83/91 (91.21%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            M+VTVR+PTTLR L+ GAS+V VEG+ L+ VI NL+AAHPGF++RLLDE G +R+FVN+FVADDDVR+LDGLDTKVPDGETVSIIPAVAGG
Sbjct:    1 MSVTVRVPTTLRTLTTGASEVTVEGETLAQVIENLEAAHPGFRERLLDEEGNLRRFVNVFVADDDVRFLDGLDTKVPDGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A7W1LTF1_9ACTN (MoaD/ThiS family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LTF1_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.190e-43
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGGA+ V VE   L DVI++L+ AH GF+DRLLD++G++RKFVN+FV DDDVRYLDGLDTKVPDG+TVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGATTVDVEPGTLGDVISSLETAHAGFRDRLLDDAGSLRKFVNVFVDDDDVRYLDGLDTKVPDGQTVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A6I3CB18_9ACTN (Molybdopterin synthase sulfur carrier subunit n=2 Tax=root TaxID=1 RepID=A0A6I3CB18_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.220e-43
Identity = 70/91 (76.92%), Postives = 83/91 (91.21%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTT+RPL+ G++ VQ+EG  L++V+ANLDAA PGF DRL DE+GA+RKFVN+FVADDDVRYLDGL+T VP+GETVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTMRPLASGSTTVQIEGATLAEVLANLDAAFPGFNDRLFDETGALRKFVNVFVADDDVRYLDGLNTAVPNGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A7W1UTH9_9ACTN (MoaD/ThiS family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UTH9_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 3.410e-43
Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGGAS + VE   L+DVI  L++AHPG +DRLLD+ G++RKFVN+FV DDDVRYL+GLDTKVPDG+TVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGASTIDVESGSLADVITALESAHPGLRDRLLDDDGSLRKFVNVFVDDDDVRYLEGLDTKVPDGQTVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A6I3WNZ8_9ACTN (Molybdopterin synthase sulfur carrier subunit n=2 Tax=root TaxID=1 RepID=A0A6I3WNZ8_9ACTN)

HSP 1 Score: 144 bits (362), Expect = 4.840e-43
Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            M+VTVRIPTT+RPL+GG+S V+VEG  L+DV+ANL+ A PGF DRL DE+G +RKFVN+FVADDDVRYLDGL T VPDGETVSIIPAVAGG
Sbjct:    1 MSVTVRIPTTMRPLAGGSSSVKVEGATLADVLANLNTAFPGFDDRLFDETGGLRKFVNVFVADDDVRYLDGLATTVPDGETVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A7W0KV97_9ACTN (MoaD/ThiS family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KV97_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 6.880e-43
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGG + V+V    L+DVI  LDAAH GF+DRLLD+ G +R+FVNLFV DDDVRYLDGLDTKVPDG+TVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGTTTVEVPSGTLADVIGALDAAHAGFRDRLLDDDGNLRRFVNLFVDDDDVRYLDGLDTKVPDGQTVSIIPAVAGG 91          
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Match: A0A524B5K5_9ACTN (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B5K5_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 1.390e-42
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDESGAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG 273
            MAVTVRIPTTLRPLSGG + VQVEG  L +V+  LDAAHPGFKDRL DE G  R+FVNLFVADDD RYL GLDT VP GETVSIIPAVAGG
Sbjct:    1 MAVTVRIPTTLRPLSGGNATVQVEGGTLREVLTALDAAHPGFKDRLFDEQGNQRRFVNLFVADDDARYLQGLDTPVPAGETVSIIPAVAGG 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21166.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3F1A0_9ACTN2.600e-4784.62Molybdopterin synthase sulfur carrier subunit n=3 ... [more]
A0A7K0LC61_9ACTN2.650e-4580.22Molybdopterin synthase sulfur carrier subunit n=3 ... [more]
A0A6I2X194_9ACTN1.190e-4378.02Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A5Q2RHV9_9ACTN1.190e-4376.92Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A7W1LTF1_9ACTN1.190e-4378.02MoaD/ThiS family protein n=1 Tax=Acidimicrobiia ba... [more]
A0A6I3CB18_9ACTN1.220e-4376.92Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A7W1UTH9_9ACTN3.410e-4376.92MoaD/ThiS family protein n=1 Tax=Acidimicrobiia ba... [more]
A0A6I3WNZ8_9ACTN4.840e-4376.92Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A7W0KV97_9ACTN6.880e-4378.02MoaD/ThiS family protein n=1 Tax=Acidimicrobiia ba... [more]
A0A524B5K5_9ACTN1.390e-4279.12Molybdopterin synthase sulfur carrier subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21166contigP-wetherbeei_contig21166:644..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_04890
PFAMsThiS
Model size276
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03636
KEGG Pathwayko04122,map04122
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.01e-39
EggNOG OGsCOG1977@1|root,COG1977@2|Bacteria,2HH1D@201174|Actinobacteria,4CP1M@84992|Acidimicrobiia
DescriptionThiS family
Cds size276
COG categoryH
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.1258612-CDS-P-wetherbeei_contig21166:643..9191683186218.1258612-CDS-P-wetherbeei_contig21166:643..919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21166 644..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21166.1.1prot_P-wetherbeei_contig21166.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21166 644..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21166.1.1

>prot_P-wetherbeei_contig21166.1.1 ID=prot_P-wetherbeei_contig21166.1.1|Name=mRNA_P-wetherbeei_contig21166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MAVTVRIPTTLRPLSGGASQVQVEGDVLSDVIANLDAAHPGFKDRLLDES
GAMRKFVNLFVADDDVRYLDGLDTKVPDGETVSIIPAVAGG*
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mRNA from alignment at P-wetherbeei_contig21166:644..919-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21166.1.1 ID=mRNA_P-wetherbeei_contig21166.1.1|Name=mRNA_P-wetherbeei_contig21166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig21166:644..919- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTGACCGTTCGCATCCCCACCACGCTGCGCCCCCTCTCGGGCGG CGCGTCCCAGGTCCAGGTGGAGGGCGACGTGCTCTCCGACGTCATCGCCA ACCTCGATGCCGCTCACCCCGGCTTCAAGGATCGCCTGCTCGACGAATCC GGTGCGATGCGCAAGTTCGTCAACCTGTTCGTCGCCGATGACGACGTGCG CTACCTCGACGGGCTCGACACCAAGGTGCCCGACGGCGAGACCGTCAGCA TCATCCCCGCCGTCGCCGGCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21166:644..919-

>mRNA_P-wetherbeei_contig21166.1.1 ID=mRNA_P-wetherbeei_contig21166.1.1|Name=mRNA_P-wetherbeei_contig21166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig21166:644..919- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTGACCGTTCGCATCCCCACCACGCTGCGCCCCCTCTCGGGCGG
CGCGTCCCAGGTCCAGGTGGAGGGCGACGTGCTCTCCGACGTCATCGCCA
ACCTCGATGCCGCTCACCCCGGCTTCAAGGATCGCCTGCTCGACGAATCC
GGTGCGATGCGCAAGTTCGTCAACCTGTTCGTCGCCGATGACGACGTGCG
CTACCTCGACGGGCTCGACACCAAGGTGCCCGACGGCGAGACCGTCAGCA
TCATCCCCGCCGTCGCCGGCGGCTGA
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