mRNA_P-wetherbeei_contig21133.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21133.2.1
Unique NamemRNA_P-wetherbeei_contig21133.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A3C2B306_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B306_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 7.610e-43
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = 1
Query:    4 SPMDETADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHEGR 327
            S +  T+D+RAAMRAFLQRCEVRLST+HRVATALLSGAGILVLLPAVERD+V+Q +R+LL GP + +R LLA AVA+SI LAL VLWL++ ELTRFYFHANHV  + R
Sbjct:    4 SSVGPTSDERAAMRAFLQRCEVRLSTMHRVATALLSGAGILVLLPAVERDAVLQVMRSLLAGPVSWSRGLLAAAVALSIFLALAVLWLLIIELTRFYFHANHVVQDDR 111          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A7X9KH53_9ACTN (Uncharacterized protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KH53_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 1.370e-39
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 1
Query:   22 ADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEH 318
            AD+RAAMR FLQRCEVRLST+HRVATALLSGAGILVLLPA+ERD+V+Q LRALL GP + +R LL  AVA+SI LAL VLWLVV ELTRFYFHANHV H
Sbjct:   14 ADERAAMRGFLQRCEVRLSTMHRVATALLSGAGILVLLPALERDAVLQVLRALLAGPVSWSRGLLMIAVALSIVLALVVLWLVVIELTRFYFHANHVVH 112          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A6I3EQ17_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3EQ17_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 1.300e-37
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    4 SPMDETADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEH 318
            S  + T D+RAAMR++LQRC+VRLST+HRVATALLSGAGILVLLPAVERDSV+Q +RALL GP + +R LL  AV +SI LAL VLWLV+ ELTRFYF ANHV H
Sbjct:    2 SDAEPTLDERAAMRSYLQRCDVRLSTVHRVATALLSGAGILVLLPAVERDSVLQVIRALLAGPVSWSRGLLLVAVVLSIFLALAVLWLVIIELTRFYFDANHVIH 106          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: UPI001C636103 (hypothetical protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C636103)

HSP 1 Score: 113 bits (283), Expect = 7.530e-28
Identity = 59/101 (58.42%), Postives = 80/101 (79.21%), Query Frame = 1
Query:   19 TADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHE 321
            ++D+RAA+RA+LQR EVRLST+HRVA+ALLSGAG++VLLPAV RDSV+  + AL+ G  T   +LL  AV  S+AL +  L  ++++LT+FYFHANH+ HE
Sbjct:   15 SSDERAAVRAYLQRSEVRLSTVHRVASALLSGAGLMVLLPAVARDSVVDVVHALVRGSVTAPDVLLLVAVGTSLALPVTALLFLLRDLTQFYFHANHIRHE 115          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A2E0RV00_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RV00_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 1.020e-26
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   19 TADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHEGR 327
            +AD+RAA RAF+ RCEVRLST HR+A  LLSGAG+LV+LP V RDSV   LR+LL G   ++ + LA  V   +A+ +  LWL+  +LTRFYFHANH+  EGR
Sbjct:   12 SADERAAARAFVARCEVRLSTFHRIAVGLLSGAGLLVVLPVVARDSVAGVLRSLLIGEIAVSDIALAIGVMAMLAVPVVALWLLFADLTRFYFHANHLGGEGR 114          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A7X7HT53_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HT53_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 5.130e-25
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   25 DDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHEG 324
            D+RAA+RAFLQR EVRLST+HRVATALLSGAG++VLLP V RD+V + +R +  G   +  +LL  AV ++ ++ +  L +V ++LT FYFHA HV+H G
Sbjct:   12 DERAAVRAFLQRAEVRLSTVHRVATALLSGAGLMVLLPVVGRDAVAEVIRHIFTGTVDVPHVLLGVAVLVAFSVPVVSLVMVFRDLTEFYFHATHVQHAG 111          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A7Y2GSH9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GSH9_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 5.730e-23
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   25 DDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHEGR 327
            D+RAA RAF+ RCEVRLST HR+A  +LSGAG+LV+LP V RDSV   LR+LL        + L   V   +A+ +  LWL+  +LTRFYFHANH+  +GR
Sbjct:   13 DERAAARAFVARCEVRLSTFHRIAVGMLSGAGLLVVLPVVARDSVTGVLRSLLIDGIGAADIALVIGVVAMLAVPVTALWLLFADLTRFYFHANHLGGDGR 113          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A6C7E7U9_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E7U9_ILUCY)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-22
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   19 TADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHV 312
            T D+RAA RAF+ RCEVR+ST HR+A  LLSGAG+LV+LP V RDS+   LRAL  G  TL+  LL   V   + +    LWL+  +LTRFYFHANH+
Sbjct:   11 TPDERAAARAFVARCEVRISTFHRIAVGLLSGAGLLVVLPVVARDSITGILRALAVGEFTLSDGLLGVMVLAILGVPGFALWLLFADLTRFYFHANHL 108          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: A0A6J7AK50_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7AK50_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-16
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = -2
Query:    3 TSHSTHNASAIEIATAPARSSRVSVGGPCSSARSSWITESRSTAGSRTRIPAPDSSAVATRWSVDSRTSHRWRKARIAARSSAVSSIGE 269
            TSHST NA  I+  TA + S R    GP SSAR +  T SRSTAGS TR+PAPD+SAVATR +V+S TS RWR  R+AARSS V S  +
Sbjct:    3 TSHSTANARKIDNTTATSSSPRDQDTGPASSARITCSTLSRSTAGSSTRMPAPDNSAVATRCTVESLTSQRWRYERMAARSSRVGSASD 91          
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Match: UPI00201B8A78 (hypothetical protein n=1 Tax=Bradyrhizobium sp. C-145 TaxID=574727 RepID=UPI00201B8A78)

HSP 1 Score: 72.4 bits (176), Expect = 6.030e-14
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   40 MRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSVIQELRALLH--------GPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANHVEHEGR 327
            MRAFLQR EVRLST+HR+  A LSGAG+L LLP   +D+ +    A++H          P L  ++    VA +  + +  LW ++++L+ FYF AN   H  R
Sbjct:    1 MRAFLQRAEVRLSTMHRIGGAFLSGAGLLFLLPVFAKDAFVAISEAVVHVWPFIQATKSPDLWLVIYGIPVATAFVIPVVALWALLRDLSLFYFSANLPSHASR 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21133.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B306_9ACTN7.610e-4373.15Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7X9KH53_9ACTN1.370e-3979.80Uncharacterized protein n=3 Tax=Actinobacteria Tax... [more]
A0A6I3EQ17_9ACTN1.300e-3772.38Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
UPI001C6361037.530e-2858.42hypothetical protein n=1 Tax=Iamia sp. SCSIO 61187... [more]
A0A2E0RV00_9ACTN1.020e-2657.28Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X7HT53_9ACTN5.130e-2555.00Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7Y2GSH9_9ACTN5.730e-2353.47Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A6C7E7U9_ILUCY1.200e-2256.12Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A6J7AK50_9ZZZZ1.100e-1659.55Unannotated protein n=1 Tax=freshwater metagenome ... [more]
UPI00201B8A786.030e-1440.38hypothetical protein n=1 Tax=Bradyrhizobium sp. C-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21133contigP-wetherbeei_contig21133:854..1180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_18080
Model size327
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.44e-23
EggNOG OGs2E2BT@1|root,32XGW@2|Bacteria,2HAE1@201174|Actinobacteria
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.4265509-UTR-P-wetherbeei_contig21133:853..8621683186217.4265509-UTR-P-wetherbeei_contig21133:853..862Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21133 854..862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.4368415-CDS-P-wetherbeei_contig21133:862..11801683186217.4368415-CDS-P-wetherbeei_contig21133:862..1180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21133 863..1180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21133.2.1prot_P-wetherbeei_contig21133.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21133 863..1180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21133.2.1

>prot_P-wetherbeei_contig21133.2.1 ID=prot_P-wetherbeei_contig21133.2.1|Name=mRNA_P-wetherbeei_contig21133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MDETADDRAAMRAFLQRCEVRLSTLHRVATALLSGAGILVLLPAVERDSV
IQELRALLHGPPTLTRLLLAGAVAISIALALCVLWLVVQELTRFYFHANH
VEHEGR
back to top

mRNA from alignment at P-wetherbeei_contig21133:854..1180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21133.2.1 ID=mRNA_P-wetherbeei_contig21133.2.1|Name=mRNA_P-wetherbeei_contig21133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig21133:854..1180+ (Phaeothamnion wetherbeei SAG_119_79)
CATTCGCCGATGGACGAGACCGCCGACGACCGAGCCGCGATGCGCGCCTT CCTCCAACGGTGCGAGGTACGGCTGTCCACGCTCCATCGAGTCGCCACCG CGCTGCTGTCCGGCGCGGGGATCCTCGTCCTGCTCCCCGCGGTCGAGCGG GACTCGGTGATCCAGGAGCTGCGCGCACTGCTGCACGGCCCACCCACGCT GACACGGCTGCTCCTCGCCGGCGCCGTGGCGATCTCGATCGCACTCGCGT TGTGCGTGCTGTGGCTCGTGGTGCAGGAGCTGACGCGGTTCTACTTCCAC GCCAACCACGTCGAGCACGAGGGCCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21133:854..1180+

>mRNA_P-wetherbeei_contig21133.2.1 ID=mRNA_P-wetherbeei_contig21133.2.1|Name=mRNA_P-wetherbeei_contig21133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig21133:854..1180+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGACCGCCGACGACCGAGCCGCGATGCGCGCCTTCCTCCAACG
GTGCGAGGTACGGCTGTCCACGCTCCATCGAGTCGCCACCGCGCTGCTGT
CCGGCGCGGGGATCCTCGTCCTGCTCCCCGCGGTCGAGCGGGACTCGGTG
ATCCAGGAGCTGCGCGCACTGCTGCACGGCCCACCCACGCTGACACGGCT
GCTCCTCGCCGGCGCCGTGGCGATCTCGATCGCACTCGCGTTGTGCGTGC
TGTGGCTCGTGGTGCAGGAGCTGACGCGGTTCTACTTCCACGCCAACCAC
GTCGAGCACGAGGGCCGG
back to top