mRNA_P-wetherbeei_contig21066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21066.1.1
Unique NamemRNA_P-wetherbeei_contig21066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21066contigP-wetherbeei_contig21066:124..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog93057.EU95_1061
PFAMsT2SSF
Model size318
Max annot lvl1117|Cyanobacteria
KEGG koko:K02653
KEGG TC3.A.15.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.96e-06
EggNOG OGsCOG1459@1|root,COG1459@2|Bacteria,1GBZH@1117|Cyanobacteria,1MPK6@1212|Prochloraceae
DescriptionType II secretory pathway
Cds size318
COG categoryU
BRITEko00000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.7975736-CDS-P-wetherbeei_contig21066:123..4411683186215.7975736-CDS-P-wetherbeei_contig21066:123..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21066 124..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21066.1.1prot_P-wetherbeei_contig21066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21066 124..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21066.1.1

>prot_P-wetherbeei_contig21066.1.1 ID=prot_P-wetherbeei_contig21066.1.1|Name=mRNA_P-wetherbeei_contig21066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
AATPVAEESAQEFHEQVDLLAWTKMMAVMVGGGVPYGQIFRLQRKHLGRW
LHPVIDDCDTSILHAGQTLSECLGRYPASFAPDFVATVELGELSNLGRAF
ERLYEQ
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mRNA from alignment at P-wetherbeei_contig21066:124..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21066.1.1 ID=mRNA_P-wetherbeei_contig21066.1.1|Name=mRNA_P-wetherbeei_contig21066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig21066:124..441- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCAACGCCCGTCGCAGAGGAGAGCGCGCAAGAATTTCACGAGCAGGT
CGATCTGCTGGCCTGGACCAAGATGATGGCGGTGATGGTCGGTGGCGGGG
TGCCTTACGGTCAGATCTTTCGCTTACAGCGGAAGCATCTCGGGCGCTGG
CTGCATCCCGTTATCGACGATTGCGACACCTCGATTTTGCACGCGGGTCA
GACGCTCTCGGAGTGTCTTGGACGCTACCCCGCCTCGTTTGCGCCCGATT
TCGTGGCGACGGTGGAATTGGGAGAGCTGAGCAATCTGGGGCGCGCCTTC
GAACGACTTTATGAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21066:124..441-

>mRNA_P-wetherbeei_contig21066.1.1 ID=mRNA_P-wetherbeei_contig21066.1.1|Name=mRNA_P-wetherbeei_contig21066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig21066:124..441- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCAACGCCCGTCGCAGAGGAGAGCGCGCAAGAATTTCACGAGCAGGT
CGATCTGCTGGCCTGGACCAAGATGATGGCGGTGATGGTCGGTGGCGGGG
TGCCTTACGGTCAGATCTTTCGCTTACAGCGGAAGCATCTCGGGCGCTGG
CTGCATCCCGTTATCGACGATTGCGACACCTCGATTTTGCACGCGGGTCA
GACGCTCTCGGAGTGTCTTGGACGCTACCCCGCCTCGTTTGCGCCCGATT
TCGTGGCGACGGTGGAATTGGGAGAGCTGAGCAATCTGGGGCGCGCCTTC
GAACGACTTTATGAGCAG
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