mRNA_P-wetherbeei_contig21014.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21014.1.1
Unique NamemRNA_P-wetherbeei_contig21014.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.710e-15
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGES 108
            LFVR+DGTVDWDGAIQSGR+VARFGQELWDRING++
Sbjct:  417 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQN 452          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.730e-15
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGES 108
            LFVR+DGTVDWDGAIQSGR+VARFGQELWDRING++
Sbjct:  233 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQN 268          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.770e-14
Identity = 30/35 (85.71%), Postives = 35/35 (100.00%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGE 105
            LFVR+DGTVDWDGAIQSGR+VARFG+ELW+RING+
Sbjct:  193 LFVRDDGTVDWDGAIQSGREVARFGKELWERINGQ 227          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 65.5 bits (158), Expect = 2.620e-11
Identity = 25/36 (69.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGES 108
            LFVR+DGTVDWDGA++SG+++A FGQE+WDR+NG +
Sbjct:  403 LFVRDDGTVDWDGAMESGKELAVFGQEVWDRLNGRT 438          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A7S4DP72_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP72_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 7.890e-11
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGESA 111
            L VREDGTVDWDG I+ GR+VA+FGQ+LW R+N +S+
Sbjct:  132 LIVREDGTVDWDGVIEGGREVAQFGQDLWQRLNAKSS 168          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: B8C2L4_THAPS (LETM1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2L4_THAPS)

HSP 1 Score: 58.5 bits (140), Expect = 7.260e-9
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGESAATAGE 126
            L+VREDGT+DWDGA+Q    + +FG  +W RING+   T+G+
Sbjct:  301 LYVREDGTIDWDGALQDREALKKFGSAVWSRINGQDPETSGD 342          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGES 108
            +FVREDGTVDWDGA QSG+++A++  E+ +R+ G+S
Sbjct:  379 VFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKS 414          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: W7U438_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U438_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGES 108
            +FVREDGTVDWDGA QSG+++A++  E+ +R+ G+S
Sbjct:  315 VFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKS 350          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: A0A7S0CIX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIX0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGESAAT 117
            L+VR+DGTVDWDGA+Q    +  FG  +W RING  A T
Sbjct:   69 LYVRDDGTVDWDGALQDRAAIRTFGTAVWSRINGRDAET 107          
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Match: K0RSL1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSL1_THAOC)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1
Query:    1 LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGESAATAGE 126
            L+VR+DGT+DWDGA+Q    + +FG  +W RING      G+
Sbjct:  277 LYVRDDGTIDWDGALQDREALKKFGSAVWSRINGRDPEEGGD 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21014.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE5.710e-1588.89LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI5.730e-1588.89LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YNT1_9STRA4.770e-1485.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1NU99_9EUGL2.620e-1169.44Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4DP72_9EUKA7.890e-1167.57Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
B8C2L4_THAPS7.260e-952.38LETM1 domain-containing protein n=1 Tax=Thalassios... [more]
A0A4D9D1V1_9STRA1.660e-758.33LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
W7U438_9STRA1.660e-758.33Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0CIX0_9STRA1.670e-756.41Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K0RSL1_THAOC3.110e-747.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21014contigP-wetherbeei_contig21014:348..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP03
PFAMsLETM1
Model size126
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.39e-16
EggNOG OGsKOG1043@1|root,KOG1043@2759|Eukaryota
Descriptioncalcium export from the mitochondrion
Cds size126
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186214.7844732-CDS-P-wetherbeei_contig21014:347..4731683186214.7844732-CDS-P-wetherbeei_contig21014:347..473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21014 348..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21014.1.1prot_P-wetherbeei_contig21014.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21014 348..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21014.1.1

>prot_P-wetherbeei_contig21014.1.1 ID=prot_P-wetherbeei_contig21014.1.1|Name=mRNA_P-wetherbeei_contig21014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
LFVREDGTVDWDGAIQSGRDVARFGQELWDRINGESAATAGE
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mRNA from alignment at P-wetherbeei_contig21014:348..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21014.1.1 ID=mRNA_P-wetherbeei_contig21014.1.1|Name=mRNA_P-wetherbeei_contig21014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig21014:348..473- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTTGTGCGGGAGGACGGCACGGTGGACTGGGATGGGGCCATCCAGTC CGGCCGCGACGTGGCGCGCTTCGGGCAGGAGCTATGGGACCGCATCAACG GTGAGTCAGCCGCAACGGCAGGGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21014:348..473-

>mRNA_P-wetherbeei_contig21014.1.1 ID=mRNA_P-wetherbeei_contig21014.1.1|Name=mRNA_P-wetherbeei_contig21014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig21014:348..473- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTTGTGCGGGAGGACGGCACGGTGGACTGGGATGGGGCCATCCAGTC
CGGCCGCGACGTGGCGCGCTTCGGGCAGGAGCTATGGGACCGCATCAACG
GTGAGTCAGCCGCAACGGCAGGGGAA
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