mRNA_P-wetherbeei_contig21000.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21000.2.1
Unique NamemRNA_P-wetherbeei_contig21000.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21000.2.1 vs. uniprot
Match: A0A1E4FXH1_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FXH1_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 7.920e-9
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:    1 LLLLLVLSPAAFAQAWTQKGTTWTHSNGLSLTFPGEFQVKPDKNGFLNATAAGGVVSMVFTPVKGKEQMKGAMKGIFQTMQAAKVELKTDTQSGKQNGL 297
            LLLL VL+  A+ + W+ +G T+ HSNG+S+TFP +FQV+   +G L+     G V      +KG++  K  + G  +      ++ K+D     ++GL
Sbjct:    5 LLLLWVLALPAWCKDWSHQGNTYKHSNGMSITFPADFQVEEQSSGILDVQGKQGFVHFSVQGMKGEKNFKSWILGQQKAYDQEGLKTKSDFSKKLKSGL 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21000.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E4FXH1_9BACT7.920e-933.33Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21000contigP-wetherbeei_contig21000:885..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categorysignal peptide
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186214.4919794-CDS-P-wetherbeei_contig21000:884..11811683186214.4919794-CDS-P-wetherbeei_contig21000:884..1181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21000 885..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21000.2.1prot_P-wetherbeei_contig21000.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21000 885..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21000.2.1

>prot_P-wetherbeei_contig21000.2.1 ID=prot_P-wetherbeei_contig21000.2.1|Name=mRNA_P-wetherbeei_contig21000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
LLLLLVLSPAAFAQAWTQKGTTWTHSNGLSLTFPGEFQVKPDKNGFLNAT
AAGGVVSMVFTPVKGKEQMKGAMKGIFQTMQAAKVELKTDTQSGKQNGL
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mRNA from alignment at P-wetherbeei_contig21000:885..1181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21000.2.1 ID=mRNA_P-wetherbeei_contig21000.2.1|Name=mRNA_P-wetherbeei_contig21000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig21000:885..1181+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTTGCTGCTCGTGCTCTCCCCTGCTGCCTTTGCACAGGCCTGGAC
GCAGAAAGGAACCACCTGGACTCACAGCAACGGGCTGTCCCTCACTTTTC
CCGGCGAATTCCAGGTCAAGCCGGATAAGAACGGCTTTCTCAACGCCACG
GCCGCGGGCGGAGTGGTCAGTATGGTGTTCACCCCGGTGAAGGGAAAAGA
ACAGATGAAGGGTGCAATGAAAGGCATCTTTCAGACGATGCAGGCGGCCA
AGGTGGAACTCAAGACCGACACCCAGTCGGGCAAACAGAACGGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21000:885..1181+

>mRNA_P-wetherbeei_contig21000.2.1 ID=mRNA_P-wetherbeei_contig21000.2.1|Name=mRNA_P-wetherbeei_contig21000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig21000:885..1181+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTTGCTGCTCGTGCTCTCCCCTGCTGCCTTTGCACAGGCCTGGAC
GCAGAAAGGAACCACCTGGACTCACAGCAACGGGCTGTCCCTCACTTTTC
CCGGCGAATTCCAGGTCAAGCCGGATAAGAACGGCTTTCTCAACGCCACG
GCCGCGGGCGGAGTGGTCAGTATGGTGTTCACCCCGGTGAAGGGAAAAGA
ACAGATGAAGGGTGCAATGAAAGGCATCTTTCAGACGATGCAGGCGGCCA
AGGTGGAACTCAAGACCGACACCCAGTCGGGCAAACAGAACGGCCTC
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