mRNA_P-wetherbeei_contig2092.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2092.1.1
Unique NamemRNA_P-wetherbeei_contig2092.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2092contigP-wetherbeei_contig2092:107..1711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1368
Hectar predicted targeting categoryother localisation
Exons2
Cds size1050
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.0412126-UTR-P-wetherbeei_contig2092:106..3011683186212.0412126-UTR-P-wetherbeei_contig2092:106..301Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2092 107..301 -
1683186212.092616-UTR-P-wetherbeei_contig2092:1588..17111683186212.092616-UTR-P-wetherbeei_contig2092:1588..1711Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2092 1589..1711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.0507984-CDS-P-wetherbeei_contig2092:301..11611683186212.0507984-CDS-P-wetherbeei_contig2092:301..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2092 302..1161 -
1683186212.0719776-CDS-P-wetherbeei_contig2092:1398..15881683186212.0719776-CDS-P-wetherbeei_contig2092:1398..1588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2092 1399..1588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2092.1.1prot_P-wetherbeei_contig2092.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2092 302..1588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2092.1.1

>prot_P-wetherbeei_contig2092.1.1 ID=prot_P-wetherbeei_contig2092.1.1|Name=mRNA_P-wetherbeei_contig2092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=350bp
MGYMVSGWPSSAGMAGGSSAGFSAAAGGGVGYLPGTEHLMYAHMGGLVHP
ALQAQQQSVALSAGSMQQAYPWAYATYTAPPQWGVDASAPQLPGSVPPQQ
QSPQQQQQQTTTPQQQQQQQLLLQQQMLQQQQQQAAAAAAAAAAANQPGM
AQYYNGLQGLNYYGGAPSFYNYGGGMGQDQSALMMQMAGQARYAGMAGLQ
MSQPGQQQQPPLSPASTEASAAAGTAGEGVSGNGTAEQNGGGGEDDVAQQ
ASRLQMPGQQQGQHASSPSRQRLQPHAPSPSRFGAPKPEDGEKELQAEAV
AAAVAAQNMSRSLPGPPLASMRPMVNAYPSSERVAFGQPPMKREKATAS*
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mRNA from alignment at P-wetherbeei_contig2092:107..1711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2092.1.1 ID=mRNA_P-wetherbeei_contig2092.1.1|Name=mRNA_P-wetherbeei_contig2092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1605bp|location=Sequence derived from alignment at P-wetherbeei_contig2092:107..1711- (Phaeothamnion wetherbeei SAG_119_79)
GGGTCGGCGGCGTCACAGCAGTTGCAAGCCCAGCAGCAACAACAGGCGCA
ACAACAGGCGGCCCTTCAGGCGGCGGCGGCCGCGGCCGCGCAGCACTCGC
AGCAGCAGCAGCAGCAGCAGCAGATGGGCTACATGGTTTCGGGGTGGCCG
AGCAGCGCCGGGATGGCGGGCGGGTCGAGCGCCGGGTTCAGTGCCGCGGC
CGGCGGCGGCGTCGGCTACCTCCCAGGCACGGAGCACCTGATGTACGCGC
ACATGGGGGGTCTCGTGCACCCGGCGCTGCAGGCCCAGCAGCAGAGCGTC
GCGTTGTCCGCAGGTGAGGGAGAGAACAGGGGAGAGTTTGGAATAATGTT
TCCCCTTGTCAGATCCCAACCAGTGCATATCATCGCGTTCTTCGCTCGAG
TGTAGTTGACGACCTCTTCACAATGCAAGCGCGTGCGGGAGAGATTGCGT
TTGCCTTCTCCTCCTTGGTTCTTCTCACACATTTTTGTCCGACCGTAACT
CCGCCGTTGGTGCCCTGCCCGTTACCGAACCTGATTGGCGGTTCCGCTAG
GGAGCATGCAGCAGGCGTATCCGTGGGCGTACGCAACGTATACGGCGCCG
CCGCAGTGGGGCGTGGACGCGTCGGCGCCGCAGCTACCGGGATCGGTGCC
TCCACAGCAGCAGTCGCCACAACAGCAGCAACAGCAGACGACAACGCCGC
AGCAGCAACAGCAGCAGCAACTGCTCTTGCAGCAGCAGATGCTCCAACAG
CAGCAGCAGCAGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGAACCA
GCCTGGTATGGCGCAGTACTACAACGGCCTGCAAGGTCTCAACTACTACG
GCGGGGCGCCGTCCTTCTACAACTATGGCGGCGGCATGGGCCAGGACCAG
AGCGCCCTGATGATGCAGATGGCGGGGCAGGCGCGCTACGCCGGCATGGC
GGGGCTCCAAATGTCGCAGCCGGGCCAGCAGCAGCAGCCGCCGCTGTCGC
CGGCGTCGACGGAAGCGTCGGCGGCGGCGGGCACTGCTGGAGAAGGAGTG
TCGGGAAACGGCACCGCCGAGCAGAATGGCGGCGGCGGCGAGGATGACGT
GGCGCAGCAAGCGAGCCGGCTGCAGATGCCCGGTCAGCAGCAGGGGCAGC
ATGCGTCGTCGCCGTCGCGGCAGCGGCTGCAGCCCCATGCGCCGTCCCCG
TCGCGGTTTGGGGCGCCAAAGCCGGAGGATGGGGAAAAGGAGCTGCAGGC
TGAGGCGGTGGCGGCGGCGGTGGCGGCGCAAAATATGTCCCGGAGCCTTC
CCGGGCCGCCGCTGGCCTCGATGCGGCCCATGGTGAACGCCTATCCGAGT
TCGGAACGGGTCGCCTTTGGCCAGCCGCCGATGAAGCGAGAGAAAGCGAC
GGCGTCATAACGGATCCGGGACGTTTCCGGAACTGTGCCTTGTCTTGGTG
GTTTCCCATCAACGGCGCACGGAATGATCCCAATTCCGAAATAAAGTGCA
ATAATTCGCATGAGTTAGCAAAAGCCGGTATCTGGGTTGGCGGGAGCGGT
CGGCGAACTAAAACTGTAGATATTAACAAAATAAAATCAATCAAGCCTTT
CTTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2092:107..1711-

>mRNA_P-wetherbeei_contig2092.1.1 ID=mRNA_P-wetherbeei_contig2092.1.1|Name=mRNA_P-wetherbeei_contig2092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig2092:107..1711- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTACATGGTTTCGGGGTGGCCGAGCAGCGCCGGGATGGCGGGCGG
GTCGAGCGCCGGGTTCAGTGCCGCGGCCGGCGGCGGCGTCGGCTACCTCC
CAGGCACGGAGCACCTGATGTACGCGCACATGGGGGGTCTCGTGCACCCG
GCGCTGCAGGCCCAGCAGCAGAGCGTCGCGTTGTCCGCAGGGAGCATGCA
GCAGGCGTATCCGTGGGCGTACGCAACGTATACGGCGCCGCCGCAGTGGG
GCGTGGACGCGTCGGCGCCGCAGCTACCGGGATCGGTGCCTCCACAGCAG
CAGTCGCCACAACAGCAGCAACAGCAGACGACAACGCCGCAGCAGCAACA
GCAGCAGCAACTGCTCTTGCAGCAGCAGATGCTCCAACAGCAGCAGCAGC
AGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGAACCAGCCTGGTATG
GCGCAGTACTACAACGGCCTGCAAGGTCTCAACTACTACGGCGGGGCGCC
GTCCTTCTACAACTATGGCGGCGGCATGGGCCAGGACCAGAGCGCCCTGA
TGATGCAGATGGCGGGGCAGGCGCGCTACGCCGGCATGGCGGGGCTCCAA
ATGTCGCAGCCGGGCCAGCAGCAGCAGCCGCCGCTGTCGCCGGCGTCGAC
GGAAGCGTCGGCGGCGGCGGGCACTGCTGGAGAAGGAGTGTCGGGAAACG
GCACCGCCGAGCAGAATGGCGGCGGCGGCGAGGATGACGTGGCGCAGCAA
GCGAGCCGGCTGCAGATGCCCGGTCAGCAGCAGGGGCAGCATGCGTCGTC
GCCGTCGCGGCAGCGGCTGCAGCCCCATGCGCCGTCCCCGTCGCGGTTTG
GGGCGCCAAAGCCGGAGGATGGGGAAAAGGAGCTGCAGGCTGAGGCGGTG
GCGGCGGCGGTGGCGGCGCAAAATATGTCCCGGAGCCTTCCCGGGCCGCC
GCTGGCCTCGATGCGGCCCATGGTGAACGCCTATCCGAGTTCGGAACGGG
TCGCCTTTGGCCAGCCGCCGATGAAGCGAGAGAAAGCGACGGCGTCATAA
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