mRNA_P-wetherbeei_contig209.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig209.4.1
Unique NamemRNA_P-wetherbeei_contig209.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A7S4CPW7_9EUGL (DNA polymerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CPW7_9EUGL)

HSP 1 Score: 92.8 bits (229), Expect = 7.250e-22
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:   43 QVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSV 303
            +VYP+  F FA+LYFTGSDYFNRSMR +   +GL+LSDKGL  V+R     + K   H G    C++E DIF A+GLEY+ P +RSV
Sbjct:   62 KVYPKHMFPFAVLYFTGSDYFNRSMRLYCHQKGLSLSDKGLVPVVR-----VKKDVVHEGPPIPCNSEKDIFDAIGLEYKEPSERSV 143
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A7S2TRD1_9EUKA (DNA polymerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRD1_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.160e-20
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   43 QVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSV 303
            +VYP++QFAFA+LYFTGSD+FNRSMR++A  +GLTLSD GL    R  R+ +++G   F     C+TE +IF  LGLEY  P +R+V
Sbjct:   99 KVYPREQFAFAILYFTGSDHFNRSMRWYAHKKGLTLSDHGLKKTTRVNREKVWEGHSVF-----CETEEEIFYVLGLEYVEPTRRNV 180
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: F0XW54_AURAN (DNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW54_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 3.590e-19
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 ISTFSSFPLRAACCQVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTF-----HFGKSCRCDTEADIFAALGLEYRSPRQRSVDENFVQVAA 330
            I    S P R    +VY  Q +A ALLYFTGSD+FNRSMR FAK +G TL D+GL   +R+ +    +G +       G+    + E D+FA L L Y++P +R++D+N   +AA
Sbjct:    3 ICRLDSLPHRRIDVKVYAPQHYACALLYFTGSDHFNRSMRCFAKAKGFTLCDRGLRPTVRRGKATDSRGKYVDNKVAVGRPVEFEREEDVFAFLELPYKTPPERALDDNAAGIAA 117
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: R1FRI1_EMIHU (DNA_pol_B_thumb domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FRI1_EMIHU)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-18
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   43 QVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLA----IVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSVDENFVQ 321
            +VYP+++FA+ALLYFTG+D+FNRSMRF+AK  G +LSD GLA    I  R +     +GT +   +   ++EADIFAALG EYR+P  R  +   +Q
Sbjct:   18 RVYPREEFAYALLYFTGNDHFNRSMRFYAKKMGYSLSDHGLANRGGINSRGEE---VRGTRNIVPA---ESEADIFAALGFEYRAPEDRHAEATIIQ 108
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A3R7G9Z4_9STRA (DNA polymerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G9Z4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.510e-18
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   22 PLRAACCQVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRS 300
            P R    +VYP++ F+FA L+FTGSD+FNRSMRFFA   G  LSD+ L  V+R     + +G     +S  C++E DIF ALGLEY+ P +R+
Sbjct:   44 PYRRIDIKVYPRRFFSFATLHFTGSDHFNRSMRFFANKNGWNLSDRALTRVMRVNGLKVKQG-----ESVICESEVDIFIALGLEYKEPTERN 131
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A7S0CV83_9EUKA (DNA polymerase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CV83_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 4.260e-18
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   43 QVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSV 303
            +VYP++ FAFA+LYFTGSD+FNRSMR++A  +GLTLSD GL    R  R+ +++G     +S   +TE DIF ALGL+Y  P+ R+V
Sbjct:  340 KVYPRRSFAFAILYFTGSDHFNRSMRWYAHKKGLTLSDHGLCKATRVNRERVWEG-----QSVFAETEKDIFDALGLDYVEPQFRNV 421
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: R1FZA0_EMIHU (DNA_pol_B_thumb domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FZA0_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 5.020e-18
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   46 VYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLA----IVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSVDENFVQ 321
            VYP+++FA+ALLYFTG+D+FNRSMRF+AK  G +LSD GLA    I  R +     +GT +   +   ++EADIFAALG EYR+P  R  +   +Q
Sbjct:   60 VYPREEFAYALLYFTGNDHFNRSMRFYAKKMGYSLSDHGLANRGGINSRGEE---VRGTRNIVPA---ESEADIFAALGFEYRAPEDRHAEATIIQ 149
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A6A3MFJ5_9STRA (DNA polymerase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MFJ5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.790e-17
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   22 PLRAACCQVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGT-FHFGKSCRCDTEADIFAALGLEYRSPRQRSV-DENFVQ 321
            P R    ++YP+  F FA+LYFTGSD+FNRSMR FA   G +LSD+ L  V+R        GT    G+S  C++E D+F ALGLEY+ P +R+  D  F++
Sbjct:  518 PYRRLDIKIYPRHFFGFAMLYFTGSDHFNRSMRLFANKNGWSLSDRALTRVMR------VNGTKVRLGESVICESEVDVFIALGLEYKDPTERNCFDIKFIE 613
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A0S4JIV7_BODSA (POLXc domain-containing protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JIV7_BODSA)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-17
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:   43 QVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRSV 303
            ++YP  QFAFALLYFTGSDYFNRSMR F + RG +LSDK L  V+R + + +++ T H      C TE DIF A+GL Y+ P +R V
Sbjct:  901 KLYPPDQFAFALLYFTGSDYFNRSMRLFCQKRGWSLSDKDLKPVVRVRGEKVHE-TAH---GVPCKTERDIFEAIGLPYKEPWERDV 983
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BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Match: A0A3M6VF05_9STRA (DNA-directed DNA polymerase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF05_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.940e-17
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   22 PLRAACCQVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTLSDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRS 300
            P R    ++YP+  F FA+LYFTGSD+FNRSMR FA   G +LSD+ L  V+R         T   G S  C++E D+F ALGLEY+ P +R+
Sbjct:  952 PYRRLDIKIYPRHFFGFAMLYFTGSDHFNRSMRLFAHKNGWSLSDRALTRVMRANGT-----TVRLGDSVICESEVDVFIALGLEYKDPTERN 1039
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig209.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4CPW7_9EUGL7.250e-2254.02DNA polymerase n=1 Tax=Eutreptiella gymnastica Tax... [more]
A0A7S2TRD1_9EUKA1.160e-2054.02DNA polymerase n=1 Tax=Lotharella oceanica TaxID=6... [more]
F0XW54_AURAN3.590e-1941.74DNA polymerase n=1 Tax=Aureococcus anophagefferens... [more]
R1FRI1_EMIHU1.330e-1849.48DNA_pol_B_thumb domain-containing protein n=1 Tax=... [more]
A0A3R7G9Z4_9STRA1.510e-1848.39DNA polymerase n=2 Tax=Phytophthora kernoviae TaxI... [more]
A0A7S0CV83_9EUKA4.260e-1852.87DNA polymerase (Fragment) n=1 Tax=Amorphochlora am... [more]
R1FZA0_EMIHU5.020e-1850.00DNA_pol_B_thumb domain-containing protein (Fragmen... [more]
A0A6A3MFJ5_9STRA2.790e-1746.08DNA polymerase n=3 Tax=Phytophthora TaxID=4783 Rep... [more]
A0A0S4JIV7_BODSA2.890e-1754.02POLXc domain-containing protein n=1 Tax=Bodo salta... [more]
A0A3M6VF05_9STRA2.940e-1747.31DNA-directed DNA polymerase n=2 Tax=Peronospora ef... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig209contigP-wetherbeei_contig209:9089..9687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_59196
Preferred namePOLL
PFAMsBRCT_2,DNA_pol_B_palm,DNA_pol_B_thumb,DNA_pol_lambd_f,HHH_8
Model size330
Max annot lvl2759|Eukaryota
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
Exons2
Evalue3.4e-22
EggNOG OGsCOG1796@1|root,KOG2534@2759|Eukaryota
EC2.7.7.7,5.4.2.11
DescriptionDNA polymerase
Cds size330
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.5923438-CDS-P-wetherbeei_contig209:9088..91981683186211.5923438-CDS-P-wetherbeei_contig209:9088..9198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 9089..9198 -
1683186211.6044595-CDS-P-wetherbeei_contig209:9467..96871683186211.6044595-CDS-P-wetherbeei_contig209:9467..9687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig209 9468..9687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig209.4.1prot_P-wetherbeei_contig209.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig209 9089..9687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig209.4.1

>prot_P-wetherbeei_contig209.4.1 ID=prot_P-wetherbeei_contig209.4.1|Name=mRNA_P-wetherbeei_contig209.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
ISTFSSFPLRAACCQVYPQQQFAFALLYFTGSDYFNRSMRFFAKVRGLTL
SDKGLAIVLRQQRKCIYKGTFHFGKSCRCDTEADIFAALGLEYRSPRQRS
VDENFVQVAA
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mRNA from alignment at P-wetherbeei_contig209:9089..9687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig209.4.1 ID=mRNA_P-wetherbeei_contig209.4.1|Name=mRNA_P-wetherbeei_contig209.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=599bp|location=Sequence derived from alignment at P-wetherbeei_contig209:9089..9687- (Phaeothamnion wetherbeei SAG_119_79)
ATCTCCACGTTTTCTTCGTTTCCATTACGTGCGGCCTGCTGTCAGGTCTA
CCCGCAGCAGCAGTTCGCCTTTGCGCTGCTATACTTCACGGGCTCCGACT
ACTTCAACCGAAGCATGCGCTTCTTTGCCAAGGTCCGCGGCCTGACGCTG
TCCGACAAGGGGCTCGCCATCGTCCTCCGGCAACAGCGCAAGTGCATTTA
CAAAGGTACGTTCCATTTTGGTGCTTTTCTGTGCGTTTTTTGCTATTTTC
TGTGCTCTGGCTGGTTGCTTCCTGTTTAAGTTTGAAGCCGCTGCCGCGGC
CGTCTGCCTGTGCCTGTTTGCATGGCAGAATACGTCTTGAGCCTGCTACC
CCTGAAGGCCGGATCTCGCTCCCGTTTCCCAGCCTACCGCTCTAACCGCT
CCCCCTTCCCTCCCCGCGCCTGTCCGTCCCTTTGCCGATTCGTCGGTGCC
GGCCGTTATACTTTTTATACCGCAACGAACGGATTTCAGGCAAGTCGTGC
CGCTGCGACACCGAGGCGGACATCTTTGCGGCGCTGGGGCTCGAGTACCG
CTCCCCGCGGCAGCGGAGCGTCGATGAGAACTTTGTACAGGTGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig209:9089..9687-

>mRNA_P-wetherbeei_contig209.4.1 ID=mRNA_P-wetherbeei_contig209.4.1|Name=mRNA_P-wetherbeei_contig209.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig209:9089..9687- (Phaeothamnion wetherbeei SAG_119_79)
ATCTCCACGTTTTCTTCGTTTCCATTACGTGCGGCCTGCTGTCAGGTCTA
CCCGCAGCAGCAGTTCGCCTTTGCGCTGCTATACTTCACGGGCTCCGACT
ACTTCAACCGAAGCATGCGCTTCTTTGCCAAGGTCCGCGGCCTGACGCTG
TCCGACAAGGGGCTCGCCATCGTCCTCCGGCAACAGCGCAAGTGCATTTA
CAAAGGTACGTTCCATTTTGGCAAGTCGTGCCGCTGCGACACCGAGGCGG
ACATCTTTGCGGCGCTGGGGCTCGAGTACCGCTCCCCGCGGCAGCGGAGC
GTCGATGAGAACTTTGTACAGGTGGCGGCG
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