mRNA_P-wetherbeei_contig20874.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20874.1.1
Unique NamemRNA_P-wetherbeei_contig20874.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A835Z4P1_9STRA (Histidine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.950e-36
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R G LRAICGGGRYD LLESFGGEALPACGFGFGDAV+VELL+++ LLP+     VEA+V A   +LQ AAT +AAALR  GRSV+LV+E +KPKW
Sbjct:  281 RSGALRAICGGGRYDKLLESFGGEALPACGFGFGDAVIVELLKDRNLLPDTTRGTVEALVSAFSPELQGAATSIAAALRQQGRSVDLVIESRKPKW 376
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A7S0J6G0_9EUKA (Histidine--tRNA ligase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6G0_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 6.400e-36
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R G+LRAI GGGRYD LL +FGGE +PA GFG+GDAV+VELL+ +GLLP L  S VE VVFA+G +LQP A  VAAALR AGR V+L+LE KK KW
Sbjct:   31 RSGELRAIFGGGRYDKLLSTFGGEDVPAAGFGYGDAVIVELLKARGLLPTLPSSSVEVVVFAMGAELQPQAIGVAAALRAAGRKVDLLLEQKKAKW 126
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A7S0GGN0_9STRA (Histidine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GGN0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.940e-34
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R G LRAI GGGRYD LLE+FGGEA PA GFGFGDAV++ELL++KG+LP    SG +AVVFA+ EDL   A R A  LR AG+SV+++LEPKK KW
Sbjct:  230 RTGTLRAIAGGGRYDKLLETFGGEATPAAGFGFGDAVIMELLKDKGILPSFEKSGFDAVVFAMSEDLYGGALRAAILLREAGKSVDVILEPKKTKW 325
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A7S0Z522_9CRYP (Histidine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z522_9CRYP)

HSP 1 Score: 124 bits (311), Expect = 1.090e-33
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGG-EALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R G+LRAICGGGRYD LLESFG  E+LPA GFGFGDAV+VELL +  LLP+L+  GV+AVVF  G    PAA R AA LRGAG SV+LV+E KK KW
Sbjct:   92 RRGELRAICGGGRYDRLLESFGAQESLPAVGFGFGDAVIVELLSDLKLLPDLSSPGVDAVVFPFGPAQHPAAIRAAAELRGAGVSVDLVVEEKKTKW 188
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A7S3L641_9STRA (Histidine--tRNA ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L641_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.780e-33
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R+G+LRAI GGGRYD LLE+FGG+  PA GFGFGDAV+VELL+++ LLP    SG+++VVFA+ +DL PAA  VA  LR AG+ V+LVLE KK KW
Sbjct:  137 RKGELRAIAGGGRYDKLLETFGGDPTPAAGFGFGDAVIVELLKDRNLLPSFEASGMDSVVFAMSQDLYPAAIDVATRLREAGQQVDLVLEDKKAKW 232
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A8J5XK99_DIALT (Histidine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XK99_DIALT)

HSP 1 Score: 129 bits (324), Expect = 3.510e-33
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLP--ELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R+G+LRAI GGGRYD LLESFG E +PA GFGFGDAV+ ELLR+KGLLP  E   SGV+AVV A+   L P A R A+ LR AGR V+LVLEPKKPKW
Sbjct:  375 RKGELRAIFGGGRYDRLLESFGAEPMPAVGFGFGDAVIAELLRDKGLLPSFERGASGVDAVVLALDPALAPHAVRAASTLRAAGRRVDLVLEPKKPKW 472
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A6P4BHA6_ZIZJJ (Histidine--tRNA ligase n=4 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4BHA6_ZIZJJ)

HSP 1 Score: 129 bits (323), Expect = 4.100e-33
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            REG+LRAICGGGRYD LL +FGG+ +PACGFGFGDAV+VELL+EKGLLPEL++  VE +V A+  DLQ AA  VA  LRG G+SV+LVLE K  KW
Sbjct:  376 REGKLRAICGGGRYDRLLSTFGGDDIPACGFGFGDAVIVELLKEKGLLPELSLQ-VENIVCALDPDLQGAAATVATILRGKGQSVDLVLENKPLKW 470
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A498K4N4_MALDO (Histidine--tRNA ligase n=2 Tax=Maleae TaxID=721813 RepID=A0A498K4N4_MALDO)

HSP 1 Score: 122 bits (306), Expect = 4.400e-33
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R G+LRAICGGGRYD LL +FGG+ +PACGFGFGDAV+VELL+EKGLLPEL++  VE +V A+   L+ AA  VA  LRG G+SV+LVLE K  KW
Sbjct:   60 RGGKLRAICGGGRYDRLLSTFGGDDIPACGFGFGDAVIVELLKEKGLLPELSLQ-VENIVCALDPGLKEAAATVATILRGKGQSVDLVLENKPLKW 154
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A2E7ME28_9DELT (Histidine--tRNA ligase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7ME28_9DELT)

HSP 1 Score: 127 bits (319), Expect = 5.190e-33
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            R+G LRAICGGGRYD LL +FGG+ +PACGFGFGD V++ELL +KGL+PEL   GV+ VVFA  EDL+ AA +VA+ LR AGRSV+LVLE +K KW
Sbjct:  281 RQGSLRAICGGGRYDHLLSTFGGKDIPACGFGFGDVVILELLSDKGLIPELE-GGVDDVVFAFSEDLRGAALQVASHLREAGRSVDLVLEARKVKW 375
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BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Match: A0A5B6ZEQ3_DAVIN (Histidine--tRNA ligase (Fragment) n=5 Tax=asterids TaxID=71274 RepID=A0A5B6ZEQ3_DAVIN)

HSP 1 Score: 127 bits (319), Expect = 6.050e-33
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPELAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW 288
            REG+LRAICGGGRYD LL +FGG+ +PACGFGFGDAV+VELL+EKGLLPEL++  VE +V ++ +DLQ  A  VA  LRG G+SV+LVLE K  KW
Sbjct:  294 REGKLRAICGGGRYDRLLSTFGGDDIPACGFGFGDAVIVELLKEKGLLPELSLQ-VENIVCSLDDDLQGVAAAVATILRGKGQSVDLVLENKPLKW 388
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4P1_9STRA4.950e-3669.79Histidine--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A7S0J6G0_9EUKA6.400e-3667.71Histidine--tRNA ligase n=1 Tax=Calcidiscus leptopo... [more]
A0A7S0GGN0_9STRA9.940e-3465.63Histidine--tRNA ligase n=1 Tax=Proboscia inermis T... [more]
A0A7S0Z522_9CRYP1.090e-3368.04Histidine--tRNA ligase (Fragment) n=1 Tax=Hemiselm... [more]
A0A7S3L641_9STRA1.780e-3363.54Histidine--tRNA ligase (Fragment) n=1 Tax=Amphora ... [more]
A0A8J5XK99_DIALT3.510e-3368.37Histidine--tRNA ligase n=1 Tax=Diacronema lutheri ... [more]
A0A6P4BHA6_ZIZJJ4.100e-3368.75Histidine--tRNA ligase n=4 Tax=Rhamnaceae TaxID=36... [more]
A0A498K4N4_MALDO4.400e-3365.63Histidine--tRNA ligase n=2 Tax=Maleae TaxID=721813... [more]
A0A2E7ME28_9DELT5.190e-3366.67Histidine--tRNA ligase n=1 Tax=Deltaproteobacteria... [more]
A0A5B6ZEQ3_DAVIN6.050e-3366.67Histidine--tRNA ligase (Fragment) n=5 Tax=asterids... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20874contigP-wetherbeei_contig20874:636..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3988.XP_002519492.1
PFAMsHGTP_anticodon,tRNA-synt_His
Model size288
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01892
KEGG ReactionR03655
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004821,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue1.17e-33
EggNOG OGsCOG0124@1|root,KOG1936@2759|Eukaryota,37QT9@33090|Viridiplantae,3GGEC@35493|Streptophyta,4JG1D@91835|fabids
EC6.1.1.21
DescriptionHistidine--tRNA
Cds size288
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186211.107651-CDS-P-wetherbeei_contig20874:635..7881683186211.107651-CDS-P-wetherbeei_contig20874:635..788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20874 636..788 -
1683186211.1196232-CDS-P-wetherbeei_contig20874:1002..11371683186211.1196232-CDS-P-wetherbeei_contig20874:1002..1137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20874 1003..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20874.1.1prot_P-wetherbeei_contig20874.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20874 636..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20874.1.1

>prot_P-wetherbeei_contig20874.1.1 ID=prot_P-wetherbeei_contig20874.1.1|Name=mRNA_P-wetherbeei_contig20874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
REGQLRAICGGGRYDTLLESFGGEALPACGFGFGDAVVVELLREKGLLPE
LAVSGVEAVVFAIGEDLQPAATRVAAALRGAGRSVELVLEPKKPKW
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mRNA from alignment at P-wetherbeei_contig20874:636..1137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20874.1.1 ID=mRNA_P-wetherbeei_contig20874.1.1|Name=mRNA_P-wetherbeei_contig20874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig20874:636..1137- (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGGGGCAGCTGCGGGCGATCTGCGGGGGCGGGCGGTACGACACGCT
GCTCGAGTCGTTCGGCGGCGAGGCGCTGCCGGCGTGCGGCTTCGGCTTCG
GGGACGCCGTCGTCGTCGAGCTCCTGCGGGAGAAGGTATGAACCAGAGAG
ATCATTTTGCAGGATGATTGCGTTCCCTCAGTGTGTGGCTTCAGTTGTCG
CTGTTGTGGATGGCAGAAGAGCTCATGAGCGACGCGATCCCCTCTCAAGC
CGCGCCTTCTGCGGTCGTTAAGTATGATCGCTGCCATCTCGCGACCACCA
GCCCTGGCTGACCATTTCCATTGCCGACAAATCACAACCACCGCCGCAGG
GGCTCCTTCCGGAGCTGGCCGTGTCCGGCGTGGAGGCCGTCGTGTTCGCC
ATCGGGGAGGACCTGCAGCCGGCGGCCACGCGCGTGGCCGCGGCGCTGCG
CGGCGCCGGTCGGTCGGTGGAGCTTGTCCTCGAGCCCAAGAAGCCTAAGT
GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20874:636..1137-

>mRNA_P-wetherbeei_contig20874.1.1 ID=mRNA_P-wetherbeei_contig20874.1.1|Name=mRNA_P-wetherbeei_contig20874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig20874:636..1137- (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGGGGCAGCTGCGGGCGATCTGCGGGGGCGGGCGGTACGACACGCT
GCTCGAGTCGTTCGGCGGCGAGGCGCTGCCGGCGTGCGGCTTCGGCTTCG
GGGACGCCGTCGTCGTCGAGCTCCTGCGGGAGAAGGGGCTCCTTCCGGAG
CTGGCCGTGTCCGGCGTGGAGGCCGTCGTGTTCGCCATCGGGGAGGACCT
GCAGCCGGCGGCCACGCGCGTGGCCGCGGCGCTGCGCGGCGCCGGTCGGT
CGGTGGAGCTTGTCCTCGAGCCCAAGAAGCCTAAGTGG
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