mRNA_P-wetherbeei_contig20865.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A537PP10_9PROT (Helix-turn-helix domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PP10_9PROT) HSP 1 Score: 142 bits (358), Expect = 8.190e-37 Identity = 118/277 (42.60%), Postives = 147/277 (53.07%), Query Frame = 1
Query: 1 TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARI-------PAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAP-------LPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEG------RIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
+ G LLR +R D+A LKI+ L A+E GR LP AYAIGFVR+Y D L LD E++RRFK ES+ +D +L FP P+ E +PG ++ +L+LA+ YG WYY + + + RV AVP LA ++ PA EP P PS +A P S PA L XXXXXXXXXXX XXXX A PR G A G RIVI+ATSDSW QIR ++F+R L+PGESY PDR
Sbjct: 28 SAGDLLRQQREALALDLDDVAAALKIKPGYLAALEAGRPDLLPGPAYAIGFVRAYGDQLGLDGNEILRRFKAESAVLDAKPDLTFPIPLGERSIPGGSMLLVALILALCGYGTWYYVSTSEHSRPVRVIAVPPELAVKLAVMPPRQPASEPPMPAATEPSPEAQVATTPDTATPGSGGSEPASTRDAAGALSXXXXXXXXXXXXXXXXXPSAPVPLPAGPPAGPRVEGPNAYGTVDGTARIVIRATSDSWIQIRSTDQALVFTRTLKPGESYLVPDR 304
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A519XUW2_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Methylobacterium sp. TaxID=409 RepID=A0A519XUW2_9HYPH) HSP 1 Score: 139 bits (349), Expect = 8.250e-36 Identity = 112/258 (43.41%), Postives = 149/258 (57.75%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAP---LPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAE-GRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
VG LRA R R GW ++A+ L+IR LEAIE GR DLP AYA+GFVR+YA+ L LD E+ RRF+ E ++ TELAFP P+ + +P VV L+LA+GAY WY + R P V+AVPE LA P E VAP V P +A LP PP PAP LP X XXXXXXXXXX +AP + +AA+ R+++K ++S+ Q+R+ G+V+ +R++R GES+ P
Sbjct: 15 VGAELRAARLRLGWTLEEVAQGLRIRLPFLEAIEEGRIGDLPGSAYAVGFVRTYANSLGLDPDEVARRFRAEGHEVNRKTELAFPAPVPDRGVPAGAVVLLGLILAIGAYAVWYRVS-PVRHDEPTVSAVPERLA---PLAENVAPSHVSPQ----VASILP--PPTQTAGSPAPVVTLPSVPSPLVTIXVXXXXXXXXXXXXLVTPSTSAPTA--DAADTSRVLLKFKANSYVQVREKQGSVLLNRVMRAGESWPVP 260
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A3N1MBC8_9PROT (Cytoskeleton protein RodZ n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1MBC8_9PROT) HSP 1 Score: 139 bits (351), Expect = 9.640e-36 Identity = 123/296 (41.55%), Postives = 153/296 (51.69%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVE-PPAPL-------------------------------PXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGE--------AAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
VG LLR R RG +A LKIR L AIE GR LP YA+GFVR+YA+ L LD E+VRRFKQE+S +D TEL FP P +E+ +PG ++ SL+LAV Y GW+Y T + V AVP LAA P +S AL + PAS+ E PPAP XXXXXXXXXXX XXXXXXXXX APR+ E + + R+V++A +DSW Q+ D N++ +R+LRPGE Y PDR
Sbjct: 27 VGALLRQTRIGRGEDLRRVATRLKIRYPYLAAIEEGRFDKLPGITYAVGFVRTYAEHLGLDGAEMVRRFKQETSSVDNRTELVFPEPTSETNVPGGAILLISLVLAVVGYTGWFYMTEREDVRPELVAAVPSHLAA--------------PMASIALPAGGRSQSPASLTEMPPAPTREVLARFSPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEAQAATVAPRAEPEVQRMFGATSPDSRVVVRAVADSWIQVHDADSNLLMTRVLRPGEGYRVPDR 308
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A1M3PEB3_9PROT (DUF4115 domain-containing protein n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PEB3_9PROT) HSP 1 Score: 135 bits (341), Expect = 1.710e-34 Identity = 107/256 (41.80%), Postives = 146/256 (57.03%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAE--GRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
+G LRA R R G ++ HL+IR LEAIE GR DLP AYA+GFVR+YA L LD+ E+ RRF+ E++ ++ TEL FP P+ E +P ++ +LLAVGAY GWY + ++ P P + VP LAA +P P + + + A P VP A V A LP XX ++ XXXXXXXXXXX A GRIV++AT+D+W Q+RD +G V+ +R+LR GE++ P
Sbjct: 22 MGADLRAARERVGCTLPAMSAHLRIRLPYLEAIEDGRIADLPGNAYALGFVRTYARSLGLDADEIARRFRAEAAEVNRKTELTFPAPVPERGVPAGAMMLLGVLLAVGAYVGWYRLSGERAIPDP-IRPVPARLAALVPLPXXXXXXVQAAAPASVXXXAQP-VPSAEAVM--AELPPLAPXXPVQSSRIATLPXXXXXXXXXXXXXXXXXXXXXAADGGRIVLRATADAWVQVRDRTGPVLLNRVLRAGETWPVP 273
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A178MHH8_9PROT (DUF4115 domain-containing protein n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MHH8_9PROT) HSP 1 Score: 137 bits (344), Expect = 1.740e-34 Identity = 117/287 (40.77%), Postives = 156/287 (54.36%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSG-IDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLA---------------ARIPAPEPVAPR--IVVPSSSEALARALPAVPPAS------------VVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDS-WTQIRDGSGNVIFSRILRPGESYNAPDR 771
VG LRA R R G D +K L+IR+ LEA+E GRH+DLP G YA GF+R+YA+ L+LD E+VRRF+QE +G EL+FP+P+ E R+PG V+ +LLA AYGGWY + + A V +P+ L+ A P EPV + +V P +E A A P + E P P XXXXXX XXXXXXXXXXXX + E A+ R+V+KA D W Q+R+ G+++ SR+LR G+SY P+R
Sbjct: 54 VGPTLRAARERMGKSLPDCSKQLRIRQPFLEALEDGRHRDLPGGTYAAGFLRTYAEFLQLDGEEMVRRFRQEGAGGFATRAELSFPSPVTEGRVPGGAVIFLGILLAAVAYGGWYLLSTRESKVAEIVPPLPDRLSTILNRQATLTGDAKDAAKPGEEPVKAKEDVVPPQETEEEKPAPTAAAPXXXXXXXXXXXXXXIAEASKPEPVKVEAXXXXXXXXXXXXXXXXXXXXDMGNDGKVFGTEHADSRVVLKAAGDDCWIQVREMDGSLLMSRLLRKGDSYRVPNR 340
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A6J4FID1_9PROT (HTH cro/C1-type domain-containing protein n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4FID1_9PROT) HSP 1 Score: 134 bits (336), Expect = 9.270e-34 Identity = 120/269 (44.61%), Postives = 162/269 (60.22%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSG-IDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAP-EPVAPRIVVPSSSEAL----ARALPAVPPA------SVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDS-WTQIRDGSGNVIFSRILRPGESYNAPDR 771
VG L A R + G ++A L+IR+ L+A+E GRH+DLP G YA+GF+R+YA+ L+LD E+VRRF+ E++G ++ +EL FP+P++E R+PG V+ +L+ A AYGGWY+ + + A V A+PE LA + P EP A + +E A VPPA S P XXXXXXXXXXX XXXXXXXXXXXXXXX + E + RI I A D W QIR+ G ++ SR+LR G+SY P+R
Sbjct: 19 VGATLAAAREKTGKTLAEVATQLRIRQPYLQALEEGRHRDLPGGTYAVGFLRTYAEFLDLDGEEMVRRFRAEAAGDLNSRSELIFPSPVSEGRIPGGAVLFLALVAAAVAYGGWYWLSSRDGSVAEMVPALPEKLATTLNRPGEPAAVKPAETDKAEPXXXXKASKQDMVPPAEDDEGKSTPAKPVEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDEQGDSRISISAAGDDCWVQIRELDGQLLISRLLRKGDSYAVPNR 287
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A5M6IT23_9PROT (Helix-turn-helix domain-containing protein n=2 Tax=Rhodovastum atsumiense TaxID=504468 RepID=A0A5M6IT23_9PROT) HSP 1 Score: 134 bits (338), Expect = 9.650e-34 Identity = 112/271 (41.33%), Postives = 143/271 (52.77%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARI---PAPEPVAPRI-VVPSSSEALARALPAVPP----------ASVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDSWTQIRDGS-GNVIFSRILRPGESYNAPDR 771
VG L+A R R GW I +L+IR A+L AIE GR DLP AY IG VRSYA LL LD E+ RRF+ E++G+ EL+FPTP+ + +P VV + LA+GAY GWY + Q P V VPE LA + PAP P+A + P ++ A P V P ASV PPA P XXXXXXXXX P G RIV++A +D+W Q+RD G V+ +R+LR GE++ P R
Sbjct: 42 VGADLQAARERLGWDLEAIGGYLRIRPAVLRAIEEGRPADLPALAYVIGHVRSYAQLLGLDPDEVARRFRAEAAGLARQPELSFPTPVPDRGVPAGAVVLLGVTLAIGAYVGWYRVSGSQPGEPP-VRQVPERLATLVQPPPAPVPLAAAVPAAPVTAAGPATDQPMVLPFPTAAGPGQMASVTPPPALTPLXXXXXXXXXPATGVFGPPLAAGTTTAAALPPLPEGT----RIVLRAKADAWLQVRDRQQGQVLLNRVLRAGETWPVPPR 307
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: UPI000478C9F9 (DUF4115 domain-containing protein n=1 Tax=Inquilinus limosus TaxID=171674 RepID=UPI000478C9F9) HSP 1 Score: 131 bits (330), Expect = 2.330e-32 Identity = 121/310 (39.03%), Postives = 161/310 (51.94%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINE-SRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPA---PEPVAPRIVVPSSSEALARALPAVPPA----------------------------------SVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGE------------------AAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
VG++L R G+ D+A L+IR LL+AIE GRHQDLP YAIGFVR+YA+ L D ++V RFK+ES+ +++ +L FP P+ E SR+PG ++ ++L+ AY GWYY + R A + A+P AA + PE +V P++ + PA PA SV+ AP P XXXXXXXXX XXXXXXXXXXXXX A + + A EGRIV+KA++DSW QIRD G V+ SR++ GESY P
Sbjct: 38 VGRILAQAREIAGYSLYDVAAALRIRHGLLQAIEDGRHQDLPGPVYAIGFVRTYAEFLGFDGDQMVARFKRESTAVEKKPDLVFPAPVPEGSRVPGGAILMIAVLIGGLAYAGWYYLSSANRDVAAEIAALPARFAALLDGNTQPESAPGPVVQPAAPNSGPSLQPAASPAEPGPGERMTAGPIVPXXXAXXXXXXXXXXXXXXXSVMAQTAPAPATXXXXXXXXXVALXXXXXXXXXXXXXPLPATLALADRPLGAALANEPPAPQVPLAGEGRIVLKASADSWVQIRDRQGGVLMSRVMAAGESYTVP 347
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: UPI00131DA332 (helix-turn-helix domain-containing protein n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131DA332) HSP 1 Score: 130 bits (326), Expect = 2.750e-32 Identity = 116/264 (43.94%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVP---PASVV--EPPAPL---PXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
G LR R R G D+A L+IR LEA+E G+ LP AYA+ FVR+YA+ L LD+ E+VRRF+ E++ + TEL FP P+ E +P V+ L+LAVGAY GWY+ + + R PA V A+P+ LA P+A + + P + A A + P P +V +P AP P XXXXXXXXX XXXXXXXXXXXXXXX A RIV++AT+D+W Q++D SG V+ ++ L+ G+S+ P R
Sbjct: 18 AGADLREARERLGLSLHDVAFTLRIRLPHLEALEEGQISLLPGNAYALAFVRTYANALGLDAEEMVRRFRTEAAEFNRRTELVFPVPMPERGIPAGAVLLLGLVLAVGAYAGWYHLSGEGRLPAETVAAIPQRLA-------PLAQQALPPDNPAAATTAAASAPGQAPPKIVLADPAAPAMMAPPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANRIVLRATADAWMQVKDHSGAVLLNKTLKAGDSWPVPPR 274
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A560H658_9PROT (Cytoskeletal protein RodZ n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560H658_9PROT) HSP 1 Score: 131 bits (330), Expect = 2.790e-32 Identity = 112/336 (33.33%), Postives = 155/336 (46.13%), Query Frame = 1
Query: 1 TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAAR--------------IPAP---------EPVAPRI-VVPSSSEALARALPAVPPAS-------------------------VVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXX----------DAAP---------------------RSYGEAAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPD 768
TVG +LR R G+ T +A L+IRRA LEAIE GR+ DLP AY +GF+RSYADLL +DS +L+ RFK E++G P EL P P++E+R+P ++ +++LA YGGWY + R+ V +PE LA +PAP +P AP + P ++ + A+P P + PAP XXXXXXXXX V DAAP R +G+ R+V++AT +SW Q+RD G + SR+L PG+S+ APD
Sbjct: 26 TVGDILRMRREELGYDLTGVANVLRIRRAYLEAIEDGRYGDLPGQAYILGFLRSYADLLGIDSGDLLNRFKDETAGHVRPAELYLPIPVSENRVPSGALMVAAVVLAAVLYGGWYLYSSADRSALDLVPKLPERLAHLTGSGDTSSPPPANVLPAPAVQALLNQAQPTAPEVGAAPDATAPMPDAMPGPVPVAPXXXXXXXXXXXXXXXXXXXXXXXXXTATPAPAGKTXXXXXXXXXXVTSEAPDDEAPQMPDLGQPKSAAADTDAAPADTGMRPDTTAPGTAPVATKGRVFGQTGPARVVVRATDESWIQVRDAKGTLWASRVLHPGDSFRAPD 361 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20865.1.1 >prot_P-wetherbeei_contig20865.1.1 ID=prot_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGback to top mRNA from alignment at P-wetherbeei_contig20865:2..772- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20865.1.1 ID=mRNA_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig20865:2..772- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20865:2..772- >mRNA_P-wetherbeei_contig20865.1.1 ID=mRNA_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig20865:2..772- (Phaeothamnion wetherbeei SAG_119_79)back to top |