mRNA_P-wetherbeei_contig20865.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20865.1.1
Unique NamemRNA_P-wetherbeei_contig20865.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A537PP10_9PROT (Helix-turn-helix domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PP10_9PROT)

HSP 1 Score: 142 bits (358), Expect = 8.190e-37
Identity = 118/277 (42.60%), Postives = 147/277 (53.07%), Query Frame = 1
Query:    1 TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARI-------PAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAP-------LPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEG------RIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
            + G LLR +R        D+A  LKI+   L A+E GR   LP  AYAIGFVR+Y D L LD  E++RRFK ES+ +D   +L FP P+ E  +PG  ++  +L+LA+  YG WYY +  + +   RV AVP  LA ++       PA EP  P    PS    +A       P S    PA        L XXXXXXXXXXX  XXXX            A PR  G  A G      RIVI+ATSDSW QIR     ++F+R L+PGESY  PDR
Sbjct:   28 SAGDLLRQQREALALDLDDVAAALKIKPGYLAALEAGRPDLLPGPAYAIGFVRAYGDQLGLDGNEILRRFKAESAVLDAKPDLTFPIPLGERSIPGGSMLLVALILALCGYGTWYYVSTSEHSRPVRVIAVPPELAVKLAVMPPRQPASEPPMPAATEPSPEAQVATTPDTATPGSGGSEPASTRDAAGALSXXXXXXXXXXXXXXXXXPSAPVPLPAGPPAGPRVEGPNAYGTVDGTARIVIRATSDSWIQIRSTDQALVFTRTLKPGESYLVPDR 304          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A519XUW2_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Methylobacterium sp. TaxID=409 RepID=A0A519XUW2_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 8.250e-36
Identity = 112/258 (43.41%), Postives = 149/258 (57.75%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAP---LPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAE-GRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
            VG  LRA R R GW   ++A+ L+IR   LEAIE GR  DLP  AYA+GFVR+YA+ L LD  E+ RRF+ E   ++  TELAFP P+ +  +P   VV   L+LA+GAY  WY  +   R   P V+AVPE LA   P  E VAP  V P     +A  LP  PP      PAP   LP         X   XXXXXXXXXX      +AP +  +AA+  R+++K  ++S+ Q+R+  G+V+ +R++R GES+  P
Sbjct:   15 VGAELRAARLRLGWTLEEVAQGLRIRLPFLEAIEEGRIGDLPGSAYAVGFVRTYANSLGLDPDEVARRFRAEGHEVNRKTELAFPAPVPDRGVPAGAVVLLGLILAIGAYAVWYRVS-PVRHDEPTVSAVPERLA---PLAENVAPSHVSPQ----VASILP--PPTQTAGSPAPVVTLPSVPSPLVTIXVXXXXXXXXXXXXLVTPSTSAPTA--DAADTSRVLLKFKANSYVQVREKQGSVLLNRVMRAGESWPVP 260          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A3N1MBC8_9PROT (Cytoskeleton protein RodZ n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1MBC8_9PROT)

HSP 1 Score: 139 bits (351), Expect = 9.640e-36
Identity = 123/296 (41.55%), Postives = 153/296 (51.69%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVE-PPAPL-------------------------------PXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGE--------AAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
            VG LLR  R  RG     +A  LKIR   L AIE GR   LP   YA+GFVR+YA+ L LD  E+VRRFKQE+S +D  TEL FP P +E+ +PG  ++  SL+LAV  Y GW+Y T  +      V AVP  LAA              P +S AL     +  PAS+ E PPAP                                 XXXXXXXXXXX  XXXXXXXXX        APR+  E        + + R+V++A +DSW Q+ D   N++ +R+LRPGE Y  PDR
Sbjct:   27 VGALLRQTRIGRGEDLRRVATRLKIRYPYLAAIEEGRFDKLPGITYAVGFVRTYAEHLGLDGAEMVRRFKQETSSVDNRTELVFPEPTSETNVPGGAILLISLVLAVVGYTGWFYMTEREDVRPELVAAVPSHLAA--------------PMASIALPAGGRSQSPASLTEMPPAPTREVLARFSPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEAQAATVAPRAEPEVQRMFGATSPDSRVVVRAVADSWIQVHDADSNLLMTRVLRPGEGYRVPDR 308          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A1M3PEB3_9PROT (DUF4115 domain-containing protein n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PEB3_9PROT)

HSP 1 Score: 135 bits (341), Expect = 1.710e-34
Identity = 107/256 (41.80%), Postives = 146/256 (57.03%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVPPASVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAE--GRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
            +G  LRA R R G     ++ HL+IR   LEAIE GR  DLP  AYA+GFVR+YA  L LD+ E+ RRF+ E++ ++  TEL FP P+ E  +P   ++   +LLAVGAY GWY  + ++  P P +  VP  LAA +P P      +   + +     A P VP A  V   A LP    XX     ++    XXXXXXXXXXX          A   GRIV++AT+D+W Q+RD +G V+ +R+LR GE++  P
Sbjct:   22 MGADLRAARERVGCTLPAMSAHLRIRLPYLEAIEDGRIADLPGNAYALGFVRTYARSLGLDADEIARRFRAEAAEVNRKTELTFPAPVPERGVPAGAMMLLGVLLAVGAYVGWYRLSGERAIPDP-IRPVPARLAALVPLPXXXXXXVQAAAPASVXXXAQP-VPSAEAVM--AELPPLAPXXPVQSSRIATLPXXXXXXXXXXXXXXXXXXXXXAADGGRIVLRATADAWVQVRDRTGPVLLNRVLRAGETWPVP 273          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A178MHH8_9PROT (DUF4115 domain-containing protein n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MHH8_9PROT)

HSP 1 Score: 137 bits (344), Expect = 1.740e-34
Identity = 117/287 (40.77%), Postives = 156/287 (54.36%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSG-IDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLA---------------ARIPAPEPVAPR--IVVPSSSEALARALPAVPPAS------------VVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDS-WTQIRDGSGNVIFSRILRPGESYNAPDR 771
            VG  LRA R R G    D +K L+IR+  LEA+E GRH+DLP G YA GF+R+YA+ L+LD  E+VRRF+QE +G      EL+FP+P+ E R+PG  V+   +LLA  AYGGWY  +  +   A  V  +P+ L+               A  P  EPV  +  +V P  +E    A  A  P              + E   P P     XXXXXX  XXXXXXXXXXXX   +       E A+ R+V+KA  D  W Q+R+  G+++ SR+LR G+SY  P+R
Sbjct:   54 VGPTLRAARERMGKSLPDCSKQLRIRQPFLEALEDGRHRDLPGGTYAAGFLRTYAEFLQLDGEEMVRRFRQEGAGGFATRAELSFPSPVTEGRVPGGAVIFLGILLAAVAYGGWYLLSTRESKVAEIVPPLPDRLSTILNRQATLTGDAKDAAKPGEEPVKAKEDVVPPQETEEEKPAPTAAAPXXXXXXXXXXXXXXIAEASKPEPVKVEAXXXXXXXXXXXXXXXXXXXXDMGNDGKVFGTEHADSRVVLKAAGDDCWIQVREMDGSLLMSRLLRKGDSYRVPNR 340          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A6J4FID1_9PROT (HTH cro/C1-type domain-containing protein n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4FID1_9PROT)

HSP 1 Score: 134 bits (336), Expect = 9.270e-34
Identity = 120/269 (44.61%), Postives = 162/269 (60.22%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSG-IDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAP-EPVAPRIVVPSSSEAL----ARALPAVPPA------SVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDS-WTQIRDGSGNVIFSRILRPGESYNAPDR 771
            VG  L A R + G    ++A  L+IR+  L+A+E GRH+DLP G YA+GF+R+YA+ L+LD  E+VRRF+ E++G ++  +EL FP+P++E R+PG  V+  +L+ A  AYGGWY+ +    + A  V A+PE LA  +  P EP A +      +E      A     VPPA      S    P    XXXXXXXXXXX  XXXXXXXXXXXXXXX     +  E  + RI I A  D  W QIR+  G ++ SR+LR G+SY  P+R
Sbjct:   19 VGATLAAAREKTGKTLAEVATQLRIRQPYLQALEEGRHRDLPGGTYAVGFLRTYAEFLDLDGEEMVRRFRAEAAGDLNSRSELIFPSPVSEGRIPGGAVLFLALVAAAVAYGGWYWLSSRDGSVAEMVPALPEKLATTLNRPGEPAAVKPAETDKAEPXXXXKASKQDMVPPAEDDEGKSTPAKPVEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDEQGDSRISISAAGDDCWVQIRELDGQLLISRLLRKGDSYAVPNR 287          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A5M6IT23_9PROT (Helix-turn-helix domain-containing protein n=2 Tax=Rhodovastum atsumiense TaxID=504468 RepID=A0A5M6IT23_9PROT)

HSP 1 Score: 134 bits (338), Expect = 9.650e-34
Identity = 112/271 (41.33%), Postives = 143/271 (52.77%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARI---PAPEPVAPRI-VVPSSSEALARALPAVPP----------ASVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDSWTQIRDGS-GNVIFSRILRPGESYNAPDR 771
            VG  L+A R R GW    I  +L+IR A+L AIE GR  DLP  AY IG VRSYA LL LD  E+ RRF+ E++G+    EL+FPTP+ +  +P   VV   + LA+GAY GWY  +  Q    P V  VPE LA  +   PAP P+A  +   P ++   A   P V P          ASV  PPA  P XXXXXXXXX                     P   G     RIV++A +D+W Q+RD   G V+ +R+LR GE++  P R
Sbjct:   42 VGADLQAARERLGWDLEAIGGYLRIRPAVLRAIEEGRPADLPALAYVIGHVRSYAQLLGLDPDEVARRFRAEAAGLARQPELSFPTPVPDRGVPAGAVVLLGVTLAIGAYVGWYRVSGSQPGEPP-VRQVPERLATLVQPPPAPVPLAAAVPAAPVTAAGPATDQPMVLPFPTAAGPGQMASVTPPPALTPLXXXXXXXXXPATGVFGPPLAAGTTTAAALPPLPEGT----RIVLRAKADAWLQVRDRQQGQVLLNRVLRAGETWPVPPR 307          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: UPI000478C9F9 (DUF4115 domain-containing protein n=1 Tax=Inquilinus limosus TaxID=171674 RepID=UPI000478C9F9)

HSP 1 Score: 131 bits (330), Expect = 2.330e-32
Identity = 121/310 (39.03%), Postives = 161/310 (51.94%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINE-SRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPA---PEPVAPRIVVPSSSEALARALPAVPPA----------------------------------SVVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGE------------------AAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAP 765
            VG++L   R   G+   D+A  L+IR  LL+AIE GRHQDLP   YAIGFVR+YA+ L  D  ++V RFK+ES+ +++  +L FP P+ E SR+PG  ++  ++L+   AY GWYY +   R  A  + A+P   AA +     PE     +V P++  +     PA  PA                                  SV+   AP P  XXXXXXXXX   XXXXXXXXXXXXX   A  +  +                  A EGRIV+KA++DSW QIRD  G V+ SR++  GESY  P
Sbjct:   38 VGRILAQAREIAGYSLYDVAAALRIRHGLLQAIEDGRHQDLPGPVYAIGFVRTYAEFLGFDGDQMVARFKRESTAVEKKPDLVFPAPVPEGSRVPGGAILMIAVLIGGLAYAGWYYLSSANRDVAAEIAALPARFAALLDGNTQPESAPGPVVQPAAPNSGPSLQPAASPAEPGPGERMTAGPIVPXXXAXXXXXXXXXXXXXXXSVMAQTAPAPATXXXXXXXXXVALXXXXXXXXXXXXXPLPATLALADRPLGAALANEPPAPQVPLAGEGRIVLKASADSWVQIRDRQGGVLMSRVMAAGESYTVP 347          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: UPI00131DA332 (helix-turn-helix domain-containing protein n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131DA332)

HSP 1 Score: 130 bits (326), Expect = 2.750e-32
Identity = 116/264 (43.94%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    4 VGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIVVPSSSEALARALPAVP---PASVV--EPPAPL---PXXXXXXXXXXXQVXXXXXXXXXXXXXXXDAAPRSYGEAAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPDR 771
             G  LR  R R G    D+A  L+IR   LEA+E G+   LP  AYA+ FVR+YA+ L LD+ E+VRRF+ E++  +  TEL FP P+ E  +P   V+   L+LAVGAY GWY+ + + R PA  V A+P+ LA       P+A + + P +  A   A  + P   P  +V  +P AP    P  XXXXXXXXX  XXXXXXXXXXXXXXX         A   RIV++AT+D+W Q++D SG V+ ++ L+ G+S+  P R
Sbjct:   18 AGADLREARERLGLSLHDVAFTLRIRLPHLEALEEGQISLLPGNAYALAFVRTYANALGLDAEEMVRRFRTEAAEFNRRTELVFPVPMPERGIPAGAVLLLGLVLAVGAYAGWYHLSGEGRLPAETVAAIPQRLA-------PLAQQALPPDNPAAATTAAASAPGQAPPKIVLADPAAPAMMAPPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANRIVLRATADAWMQVKDHSGAVLLNKTLKAGDSWPVPPR 274          
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Match: A0A560H658_9PROT (Cytoskeletal protein RodZ n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560H658_9PROT)

HSP 1 Score: 131 bits (330), Expect = 2.790e-32
Identity = 112/336 (33.33%), Postives = 155/336 (46.13%), Query Frame = 1
Query:    1 TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIGFVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVVAFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAAR--------------IPAP---------EPVAPRI-VVPSSSEALARALPAVPPAS-------------------------VVEPPAPLPXXXXXXXXXXXQVXXXXXXXXXXXXXXX----------DAAP---------------------RSYGEAAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGESYNAPD 768
            TVG +LR  R   G+  T +A  L+IRRA LEAIE GR+ DLP  AY +GF+RSYADLL +DS +L+ RFK E++G   P EL  P P++E+R+P   ++  +++LA   YGGWY  +   R+    V  +PE LA                +PAP         +P AP +   P ++  +  A+P   P +                             PAP    XXXXXXXXX V                         DAAP                     R +G+    R+V++AT +SW Q+RD  G +  SR+L PG+S+ APD
Sbjct:   26 TVGDILRMRREELGYDLTGVANVLRIRRAYLEAIEDGRYGDLPGQAYILGFLRSYADLLGIDSGDLLNRFKDETAGHVRPAELYLPIPVSENRVPSGALMVAAVVLAAVLYGGWYLYSSADRSALDLVPKLPERLAHLTGSGDTSSPPPANVLPAPAVQALLNQAQPTAPEVGAAPDATAPMPDAMPGPVPVAPXXXXXXXXXXXXXXXXXXXXXXXXXTATPAPAGKTXXXXXXXXXXVTSEAPDDEAPQMPDLGQPKSAAADTDAAPADTGMRPDTTAPGTAPVATKGRVFGQTGPARVVVRATDESWIQVRDAKGTLWASRVLHPGDSFRAPD 361          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20865.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537PP10_9PROT8.190e-3742.60Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A519XUW2_9HYPH8.250e-3643.41Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A3N1MBC8_9PROT9.640e-3641.55Cytoskeleton protein RodZ n=1 Tax=Stella humosa Ta... [more]
A0A1M3PEB3_9PROT1.710e-3441.80DUF4115 domain-containing protein n=1 Tax=Rhodospi... [more]
A0A178MHH8_9PROT1.740e-3440.77DUF4115 domain-containing protein n=1 Tax=Magnetos... [more]
A0A6J4FID1_9PROT9.270e-3444.61HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A5M6IT23_9PROT9.650e-3441.33Helix-turn-helix domain-containing protein n=2 Tax... [more]
UPI000478C9F92.330e-3239.03DUF4115 domain-containing protein n=1 Tax=Inquilin... [more]
UPI00131DA3322.750e-3243.94helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A560H658_9PROT2.790e-3233.33Cytoskeletal protein RodZ n=1 Tax=Nitrospirillum a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20865contigP-wetherbeei_contig20865:2..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121106.JQKB01000026_gene4301
PFAMsDUF4115,HTH_25
Model size771
Max annot lvl204441|Rhodospirillales
KEGG koko:K15539
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.44e-32
EggNOG OGsCOG1426@1|root,COG1426@2|Bacteria,1MYWX@1224|Proteobacteria,2TQM2@28211|Alphaproteobacteria,2JT11@204441|Rhodospirillales
DescriptionDomain of unknown function (DUF4115)
Cds size771
COG categoryD
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.8165905-CDS-P-wetherbeei_contig20865:1..7721683186210.8165905-CDS-P-wetherbeei_contig20865:1..772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20865 2..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20865.1.1prot_P-wetherbeei_contig20865.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20865 2..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20865.1.1

>prot_P-wetherbeei_contig20865.1.1 ID=prot_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
TVGQLLRAERTRRGWQTTDIAKHLKIRRALLEAIEIGRHQDLPRGAYAIG
FVRSYADLLELDSVELVRRFKQESSGIDEPTELAFPTPINESRLPGRLVV
AFSLLLAVGAYGGWYYSTLDQRAPAPRVTAVPETLAARIPAPEPVAPRIV
VPSSSEALARALPAVPPASVVEPPAPLPPAAFVPTPAPAQVASVPVATPP
VSVAPTDAAPRSYGEAAEGRIVIKATSDSWTQIRDGSGNVIFSRILRPGE
SYNAPDR
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mRNA from alignment at P-wetherbeei_contig20865:2..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20865.1.1 ID=mRNA_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig20865:2..772- (Phaeothamnion wetherbeei SAG_119_79)
ACCGTCGGCCAGCTTCTGCGCGCCGAGCGTACGCGCCGCGGCTGGCAGAC CACCGACATCGCCAAGCATCTCAAGATCCGCCGCGCGCTGCTCGAAGCGA TCGAGATCGGCCGCCATCAGGATCTTCCGCGTGGCGCATATGCGATCGGC TTCGTGCGGTCGTACGCCGACCTTCTGGAACTCGACAGCGTCGAACTGGT GCGTCGCTTCAAGCAGGAATCGAGTGGCATCGACGAGCCGACCGAACTTG CGTTCCCCACGCCGATCAACGAGAGCCGCCTGCCGGGGCGCCTCGTCGTC GCGTTCTCGCTGCTGCTTGCGGTCGGCGCCTATGGCGGCTGGTATTATTC GACACTCGACCAGCGCGCACCTGCGCCCCGTGTCACCGCGGTACCCGAAA CGCTCGCCGCGCGCATTCCGGCACCCGAACCCGTCGCCCCGCGCATCGTG GTACCTTCGTCGAGCGAAGCGCTCGCGCGTGCCCTACCCGCAGTTCCGCC GGCCTCCGTCGTCGAGCCGCCTGCGCCGCTGCCGCCGGCCGCCTTCGTCC CCACGCCCGCCCCGGCACAGGTCGCAAGCGTTCCGGTCGCGACCCCACCT GTTTCCGTGGCACCGACGGACGCAGCGCCACGCAGCTACGGCGAGGCCGC CGAAGGCCGCATCGTGATCAAGGCGACATCCGACAGCTGGACCCAGATCC GCGACGGTTCGGGCAACGTGATTTTCTCGCGCATCCTGCGGCCCGGCGAG AGCTACAACGCGCCCGACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20865:2..772-

>mRNA_P-wetherbeei_contig20865.1.1 ID=mRNA_P-wetherbeei_contig20865.1.1|Name=mRNA_P-wetherbeei_contig20865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig20865:2..772- (Phaeothamnion wetherbeei SAG_119_79)
ACCGTCGGCCAGCTTCTGCGCGCCGAGCGTACGCGCCGCGGCTGGCAGAC
CACCGACATCGCCAAGCATCTCAAGATCCGCCGCGCGCTGCTCGAAGCGA
TCGAGATCGGCCGCCATCAGGATCTTCCGCGTGGCGCATATGCGATCGGC
TTCGTGCGGTCGTACGCCGACCTTCTGGAACTCGACAGCGTCGAACTGGT
GCGTCGCTTCAAGCAGGAATCGAGTGGCATCGACGAGCCGACCGAACTTG
CGTTCCCCACGCCGATCAACGAGAGCCGCCTGCCGGGGCGCCTCGTCGTC
GCGTTCTCGCTGCTGCTTGCGGTCGGCGCCTATGGCGGCTGGTATTATTC
GACACTCGACCAGCGCGCACCTGCGCCCCGTGTCACCGCGGTACCCGAAA
CGCTCGCCGCGCGCATTCCGGCACCCGAACCCGTCGCCCCGCGCATCGTG
GTACCTTCGTCGAGCGAAGCGCTCGCGCGTGCCCTACCCGCAGTTCCGCC
GGCCTCCGTCGTCGAGCCGCCTGCGCCGCTGCCGCCGGCCGCCTTCGTCC
CCACGCCCGCCCCGGCACAGGTCGCAAGCGTTCCGGTCGCGACCCCACCT
GTTTCCGTGGCACCGACGGACGCAGCGCCACGCAGCTACGGCGAGGCCGC
CGAAGGCCGCATCGTGATCAAGGCGACATCCGACAGCTGGACCCAGATCC
GCGACGGTTCGGGCAACGTGATTTTCTCGCGCATCCTGCGGCCCGGCGAG
AGCTACAACGCGCCCGACCGG
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