mRNA_P-wetherbeei_contig20856.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20856.1.1
Unique NamemRNA_P-wetherbeei_contig20856.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A521SI51_9BACT (4Fe-4S dicluster domain-containing protein n=2 Tax=Nitrospirae TaxID=40117 RepID=A0A521SI51_9BACT)

HSP 1 Score: 280 bits (716), Expect = 4.740e-92
Identity = 124/235 (52.77%), Postives = 169/235 (71.91%), Query Frame = 1
Query:   25 PPWGVVQWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            PP G  +WGMV+D+DRCTGC+ACV+AC +ENN+   G E  + GR ++WIRIER ++GEYP     F+P+LCQ CG+APCE VCPV+AS  T DGLN Q+YNRC+G R C NNCPY VR +N+ +P W  P+ + LNPDV+VR+ G+MEKC+ CVQRIR A+Q  +            DG + PACVQ+C +++L+FGD NDP+S V++L++ D  R F + EE  T+P++ YL+
Sbjct:   10 PPGGPYRWGMVIDLDRCTGCEACVVACHAENNIRISGEEEASKGRAVNWIRIERYWEGEYPNAQVKFMPVLCQHCGSAPCEPVCPVYASYHTPDGLNAQVYNRCVGVRYCGNNCPYTVRYFNWFEPHWDEPLNEQLNPDVTVRSVGVMEKCTFCVQRIRGAQQTAQKEGRRVK-----DGEVTPACVQSCPTEALVFGDRNDPNSRVSRLSKDD--RGFGLLEELGTEPSITYLK 237          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A3M1LPI2_9CHLR (4Fe-4S dicluster domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LPI2_9CHLR)

HSP 1 Score: 279 bits (713), Expect = 1.220e-91
Identity = 131/230 (56.96%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASV-GTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            +W MV+D+DRCTGC+ACV+AC +ENNV  VG E    GR M WIRI R ++GEYP+V A F+P+LCQQC  APCE VCPVFA+   T D LN Q+YNRCIGTR CANNCPY  R++N+  P +P P+T+ LNPDV+VR  GIMEKC+ C+QRIRR E+  +         P+ DG ++PACVQ+C +++LIFGD NDP+S V +LA+  S R FR+ EE  T+P V+YL+
Sbjct:    6 KWTMVIDLDRCTGCQACVVACHAENNVPVVGEEEVLRGRAMHWIRIARYWEGEYPDVRARFLPILCQQCENAPCEPVCPVFATYHNTQDHLNVQVYNRCIGTRYCANNCPYVSRVFNWFTPYFPEPLTEQLNPDVTVRARGIMEKCTFCIQRIRRVEERARAEA-----RPITDGEVQPACVQSCPTEALIFGDLNDPNSRVARLAK--SRRRFRLLEELGTEPAVIYLK 228          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A2H0YK15_9BACT (4Fe-4S ferredoxin n=3 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A2H0YK15_9BACT)

HSP 1 Score: 278 bits (712), Expect = 2.120e-91
Identity = 122/229 (53.28%), Postives = 168/229 (73.36%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            +WGM++D+DRCTGC ACV+AC +ENNV  VG +    GR M WIRIER ++GEYP V A F+P+LCQQC  APCE VCPV+AS    +GLN Q+YNRC+GTR CANNCPY VR++NF +P +P P+ + LNPDV+VR++G+MEKC+ C+QRIRRA++  K  +       + DG ++PAC Q C  ++++FG+  DP S V +L+   S+R FR+ E+  T P+V+YL+
Sbjct:   14 KWGMIIDLDRCTGCGACVVACHAENNVPFVGKKKSGYGRAMHWIRIERYWEGEYPNVRARFIPLLCQQCNNAPCEPVCPVYASYHNAEGLNAQVYNRCVGTRYCANNCPYSVRVFNFFEPSFPDPLNQQLNPDVTVRSKGVMEKCTFCIQRIRRAKEAAKQER-----RVIRDGEIQPACAQTCPPEAMVFGNMADPESRVFRLSR--STRRFRLIEDLGTDPSVIYLK 235          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A3M1W9S7_9BACT (4Fe-4S dicluster domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1W9S7_9BACT)

HSP 1 Score: 276 bits (707), Expect = 8.140e-91
Identity = 129/242 (53.31%), Postives = 174/242 (71.90%), Query Frame = 1
Query:   37 VVQWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAE-QDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLRPNKNSEALDP 759
            + +WGMV+D+DRCTGC+ACVIAC +ENN+  VG E  A GR  +WIRIER ++GEYP + A F+P+LCQQC  APCE VCPV+A+    +GLN Q+YNRCIGTR CANNCPY VR++N+   +W  P+ + LNPDVS+R  G+MEKC+ CVQRIRRA  Q E   +D      + DG ++PACVQ+C +++++FGD +DP S  ++ A   S R FR+ EE  T+P+V+YL   K  E ++P
Sbjct:    1 MAKWGMVIDLDRCTGCEACVIACHAENNLPIVGEEESAKGRQHNWIRIERYWEGEYPHIRARFIPVLCQQCDHAPCEPVCPVYATYHNPEGLNAQVYNRCIGTRFCANNCPYTVRVFNWFDHQWERPLDEQLNPDVSIRTRGMMEKCTFCVQRIRRARHQAEDEGRD------IRDGEVQPACVQSCPTEAMVFGDLDDPDSRASQRAR--SRRAFRLLEELGTEPSVIYL---KEDEWVEP 231          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A2W1AV49_9CHLR (Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AV49_9CHLR)

HSP 1 Score: 276 bits (707), Expect = 1.540e-90
Identity = 125/233 (53.65%), Postives = 165/233 (70.82%), Query Frame = 1
Query:   40 VQWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLID---GTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            V+W MVVD+D+CTGC+ACV+AC+SENNV     E     R M WIR+ER ++G++P+V A ++P++CQ C TAPCE VCPVFA+   ++GLN Q+YNRC+GTR CANNCPY VR +NF +P WP  +   LNPDV+VR+ GIMEKCS CVQR+RR+E+D   N D        D   G   PACV+AC +D+L+FGD N+P+S V  LA  D  R + + E   T+PNV+YL+
Sbjct:    8 VKWSMVVDIDKCTGCQACVVACQSENNVPISTQELYDQRRQMTWIRVERYWEGDFPDVKARYIPIMCQHCDTAPCEPVCPVFATYHNNEGLNVQVYNRCVGTRYCANNCPYQVRFFNFWEPVWPDSLKNQLNPDVTVRSRGIMEKCSFCVQRLRRSERDAAQNGDDRPADDAFDPSHGAFAPACVRACPTDALVFGDANNPNSRVASLAHSD--RRYHLLEHLGTEPNVIYLK 238          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A7V0UK56_9BACT (4Fe-4S dicluster domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V0UK56_9BACT)

HSP 1 Score: 275 bits (702), Expect = 5.350e-90
Identity = 125/229 (54.59%), Postives = 162/229 (70.74%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            +WGM VD+DRCTGC ACV+ACR+ENN+ T GA+    GR M WIRIER ++GE+P+V   F P+LCQ C  APCE VCP +AS  T DGLN Q+YNRCIGTR CAN C Y+VR +NF  P+W  P+   LNPDVSVR  G+MEKC+ CVQRI  A+   K         P+ DG ++PACVQ+CA+D+L+FGD NDP S V++L++  S R  ++ EE  ++P + YL+
Sbjct:    4 RWGMAVDLDRCTGCGACVVACRAENNIPTAGADQAGRGRAMHWIRIERYWEGEFPDVRVKFRPVLCQHCENAPCEPVCPTYASHHTEDGLNAQVYNRCIGTRYCANACSYNVRFFNFHNPEWDKPLHLQLNPDVSVREAGVMEKCTFCVQRINAAKLQSKAEN-----RPVQDGEVQPACVQSCAADALVFGDLNDPDSRVSRLSQ--SPRGSKLLEELGSRPKITYLQ 225          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A2E2ZLF2_9CHLR (4Fe-4S ferredoxin n=4 Tax=Chloroflexi TaxID=200795 RepID=A0A2E2ZLF2_9CHLR)

HSP 1 Score: 275 bits (703), Expect = 5.640e-90
Identity = 126/234 (53.85%), Postives = 165/234 (70.51%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGT--LRPACVQACASDSLIFGDWNDPHSTVNKLAERD---SSRTFRVGEESHTKPNVVYLR 729
            +WGMV+D+DRCTGC ACVIAC+SENN+           R + WIRIER ++GE+P V A F+P++CQ CG APCE VCPV+A+   ++GLN Q+YNRC+GTR CAN CPYHVR +NF +P+WP  +   LNPDV+VR+ GIMEKC+ CVQRIRRA +    ++DS     L DG   L PACV +CA++ LIFGDWNDP S +N++  ++     R F + E   T PNV+YL+
Sbjct:    7 KWGMVIDIDRCTGCNACVIACQSENNIPINLEAHFNQRRAIQWIRIERYWEGEFPNVKARFIPIICQHCGNAPCEPVCPVYATYHNNEGLNVQVYNRCVGTRFCANGCPYHVRFFNFWEPEWPESLKNQLNPDVTVRSRGIMEKCTFCVQRIRRATR--LADRDSVE---LEDGDRGLNPACVNSCATNGLIFGDWNDPDSQINQIKNKEMQEGGRAFGLLENLGTSPNVIYLK 235          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A0S4LQ33_9BACT (Putative Menaquinol oxidoreductase complex ACIII, iron-sulfur cluster-binding subunit ActB2 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A0S4LQ33_9BACT)

HSP 1 Score: 273 bits (699), Expect = 1.530e-89
Identity = 131/244 (53.69%), Postives = 166/244 (68.03%), Query Frame = 1
Query:    1 MADPERPKPPWGVVQWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRA-EQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            M+ P+  KP     +W MV+D+DRCTGC+ACV+AC +ENN+   G E  A GR ++WIRIER ++GEYP V A F+P+LCQ C  APCE VCPV+AS  T +GLN Q+YNRCIG R C NNCPY  R +N+  P W  P+ + LNPDV+VR  GIMEKC+ CVQRIR+  EQ EK  +      P+ DG + PACVQ C + +L+FGD NDP S V+KLA +D  R F + E   T P V YL+
Sbjct:    1 MSQPKENKPH----KWEMVIDLDRCTGCEACVVACHAENNIRISGEEEAAQGRAINWIRIERYWEGEYPNVQARFMPVLCQHCDDAPCELVCPVYASYHTPEGLNAQVYNRCIGVRYCGNNCPYTARQFNWFDPHWDEPLAEQLNPDVTVRQNGIMEKCTFCVQRIRQGKEQAEKEGR------PVRDGDIVPACVQTCPTSALVFGDRNDPDSRVSKLARQD--RGFHLLESLGTHPAVTYLK 232          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: A0A1F8TGB1_9CHLR (4Fe-4S ferredoxin n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_62_14 TaxID=1797671 RepID=A0A1F8TGB1_9CHLR)

HSP 1 Score: 274 bits (700), Expect = 1.560e-89
Identity = 128/229 (55.90%), Postives = 164/229 (71.62%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            +W MVVD+DRCTGC+ACV+AC +ENN+  VG E    GR M WI I+R ++GEYP V A F+P++CQQC  APCE VCPVFA+  + +GLN QIYNRCIGTR C N CPY VR +N+ +P++P P+ + LNPDVSVR+ GI+EKC+ CVQRIRRAE D      +     L DG ++PACVQ C   +L FGD NDP S V++LA   S R+FR+ E+  T P V+YL+
Sbjct:   19 RWAMVVDLDRCTGCQACVVACHAENNIPIVGEEQAGYGRWMHWIIIQRYWEGEYPNVKARFMPVMCQQCTQAPCEPVCPVFATYHSPEGLNAQIYNRCIGTRYCGNACPYKVRTFNWFRPEFPEPLPEQLNPDVSVRSRGIIEKCTFCVQRIRRAELDA-----AATGLTLADGEIQPACVQTCPPSALFFGDLNDPDSRVSQLAR--SHRSFRLLEDLGTGPAVIYLK 240          
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Match: Q39UN4_GEOMG (Menaquinol oxidoreductase complex ACIII, iron-sulfur cluster-binding subunit ActB2 n=3 Tax=Geobacter TaxID=28231 RepID=Q39UN4_GEOMG)

HSP 1 Score: 273 bits (699), Expect = 1.630e-89
Identity = 125/229 (54.59%), Postives = 165/229 (72.05%), Query Frame = 1
Query:   43 QWGMVVDVDRCTGCKACVIACRSENNVATVGAEACAMGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGTHDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSVRNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACASDSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLR 729
            +WGMVVD+DRCTGC ACV+AC++ENNVA  G +  + GR M W+RIER + G+YP+V A F+P+LCQ C  APCE VCPV+AS    DGLNGQ+YNRC+GTR C NNCPY VR++NF   +WP P+   L+PD++VR  G+MEKC+ C+QRIRRA++D K    S N T + DG ++PAC Q C +D+L+FG+  DP S V  L+   S R FR+ E   T P++ YL+
Sbjct:    9 RWGMVVDLDRCTGCGACVVACQAENNVAICGKKEISEGRNMHWLRIERFWVGQYPDVRARFLPVLCQHCHDAPCEPVCPVYASYHNPDGLNGQVYNRCVGTRYCGNNCPYAVRVFNFYNHEWPNPLDNQLSPDMTVRTRGVMEKCTFCIQRIRRAKEDAK----SENRT-IRDGEIQPACAQTCPTDALVFGNMADPRSRVAILSR--SPRRFRLLEHLGTHPSICYLK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521SI51_9BACT4.740e-9252.774Fe-4S dicluster domain-containing protein n=2 Tax... [more]
A0A3M1LPI2_9CHLR1.220e-9156.964Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A2H0YK15_9BACT2.120e-9153.284Fe-4S ferredoxin n=3 Tax=unclassified Nitrospirae... [more]
A0A3M1W9S7_9BACT8.140e-9153.314Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A2W1AV49_9CHLR1.540e-9053.65Prokaryotic molybdopterin-containing oxidoreductas... [more]
A0A7V0UK56_9BACT5.350e-9054.594Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A2E2ZLF2_9CHLR5.640e-9053.854Fe-4S ferredoxin n=4 Tax=Chloroflexi TaxID=200795... [more]
A0A0S4LQ33_9BACT1.530e-8953.69Putative Menaquinol oxidoreductase complex ACIII, ... [more]
A0A1F8TGB1_9CHLR1.560e-8955.904Fe-4S ferredoxin n=1 Tax=Chloroflexi bacterium RB... [more]
Q39UN4_GEOMG1.630e-8954.59Menaquinol oxidoreductase complex ACIII, iron-sulf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20856contigP-wetherbeei_contig20856:236..1000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog269799.Gmet_1811
Preferred nameactB
PFAMsFer4_7,Molybdop_Fe4S4,Molybdopterin,Molydop_binding
Model size765
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K00184
KEGG TC5.A.3
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.68e-90
EggNOG OGsCOG0437@1|root,COG0437@2|Bacteria,1MU1B@1224|Proteobacteria,42NEG@68525|delta/epsilon subdivisions,2WKHA@28221|Deltaproteobacteria,43TY6@69541|Desulfuromonadales
Description4Fe-4S dicluster domain
Cds size765
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.5213165-CDS-P-wetherbeei_contig20856:235..10001683186210.5213165-CDS-P-wetherbeei_contig20856:235..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20856 236..1000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20856.1.1prot_P-wetherbeei_contig20856.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20856 236..1000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20856.1.1

>prot_P-wetherbeei_contig20856.1.1 ID=prot_P-wetherbeei_contig20856.1.1|Name=mRNA_P-wetherbeei_contig20856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MADPERPKPPWGVVQWGMVVDVDRCTGCKACVIACRSENNVATVGAEACA
MGRIMDWIRIERIFKGEYPEVSAMFVPMLCQQCGTAPCESVCPVFASVGT
HDGLNGQIYNRCIGTRLCANNCPYHVRMYNFVQPKWPTPMTKMLNPDVSV
RNEGIMEKCSMCVQRIRRAEQDEKVNKDSTNPTPLIDGTLRPACVQACAS
DSLIFGDWNDPHSTVNKLAERDSSRTFRVGEESHTKPNVVYLRPNKNSEA
LDPL*
back to top

mRNA from alignment at P-wetherbeei_contig20856:236..1000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20856.1.1 ID=mRNA_P-wetherbeei_contig20856.1.1|Name=mRNA_P-wetherbeei_contig20856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig20856:236..1000+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATCCGGAAAGACCTAAGCCCCCGTGGGGCGTAGTTCAGTGGGG GATGGTGGTCGACGTCGATCGCTGCACGGGATGCAAAGCCTGTGTCATCG CCTGCCGCTCCGAGAATAACGTGGCCACCGTTGGTGCCGAAGCCTGTGCA ATGGGCCGCATCATGGACTGGATCCGTATCGAGCGAATCTTCAAGGGAGA ATACCCCGAAGTTTCCGCGATGTTCGTGCCTATGCTCTGTCAGCAGTGCG GCACGGCTCCGTGCGAATCGGTATGTCCGGTGTTCGCCTCGGTAGGCACC CACGACGGCCTCAACGGACAGATTTACAACCGCTGCATCGGCACCCGCCT GTGCGCGAATAACTGTCCCTATCACGTTCGTATGTATAACTTTGTTCAGC CCAAGTGGCCCACCCCGATGACAAAGATGCTCAATCCAGACGTCTCCGTT CGTAACGAAGGCATCATGGAGAAATGCTCGATGTGCGTTCAGCGAATCCG TCGGGCCGAGCAGGACGAAAAGGTTAACAAGGATTCGACGAATCCGACCC CTCTCATCGATGGAACCTTACGTCCCGCTTGCGTGCAGGCTTGCGCTTCC GACTCCCTGATTTTCGGGGACTGGAACGATCCTCACAGCACGGTCAACAA GCTGGCGGAGCGGGATTCTTCCCGCACTTTCCGAGTCGGCGAAGAGAGCC ACACGAAACCCAACGTGGTTTATCTTCGACCCAATAAAAATTCTGAAGCG CTCGACCCGTTGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20856:236..1000+

>mRNA_P-wetherbeei_contig20856.1.1 ID=mRNA_P-wetherbeei_contig20856.1.1|Name=mRNA_P-wetherbeei_contig20856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig20856:236..1000+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATCCGGAAAGACCTAAGCCCCCGTGGGGCGTAGTTCAGTGGGG
GATGGTGGTCGACGTCGATCGCTGCACGGGATGCAAAGCCTGTGTCATCG
CCTGCCGCTCCGAGAATAACGTGGCCACCGTTGGTGCCGAAGCCTGTGCA
ATGGGCCGCATCATGGACTGGATCCGTATCGAGCGAATCTTCAAGGGAGA
ATACCCCGAAGTTTCCGCGATGTTCGTGCCTATGCTCTGTCAGCAGTGCG
GCACGGCTCCGTGCGAATCGGTATGTCCGGTGTTCGCCTCGGTAGGCACC
CACGACGGCCTCAACGGACAGATTTACAACCGCTGCATCGGCACCCGCCT
GTGCGCGAATAACTGTCCCTATCACGTTCGTATGTATAACTTTGTTCAGC
CCAAGTGGCCCACCCCGATGACAAAGATGCTCAATCCAGACGTCTCCGTT
CGTAACGAAGGCATCATGGAGAAATGCTCGATGTGCGTTCAGCGAATCCG
TCGGGCCGAGCAGGACGAAAAGGTTAACAAGGATTCGACGAATCCGACCC
CTCTCATCGATGGAACCTTACGTCCCGCTTGCGTGCAGGCTTGCGCTTCC
GACTCCCTGATTTTCGGGGACTGGAACGATCCTCACAGCACGGTCAACAA
GCTGGCGGAGCGGGATTCTTCCCGCACTTTCCGAGTCGGCGAAGAGAGCC
ACACGAAACCCAACGTGGTTTATCTTCGACCCAATAAAAATTCTGAAGCG
CTCGACCCGTTGTAG
back to top