mRNA_P-wetherbeei_contig20846.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20846.1.1
Unique NamemRNA_P-wetherbeei_contig20846.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A7S0GHA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHA4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.100e-24
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   10 RSRFSMAAKPVT-VGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            R    MAA  V  V   ++KKV+VLGGDGFCGWPT LHLSD GHDVV+VDNLSRR ID+ELGC SL
Sbjct:   36 RGSLYMAADGVNGVNGDEKKKVIVLGGDGFCGWPTSLHLSDKGHDVVIVDNLSRRNIDIELGCDSL 101
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: K0TNT9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNT9_THAOC)

HSP 1 Score: 95.1 bits (235), Expect = 1.980e-23
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 HASRSRFSMAAKPVTVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            H+S + F  AA  V  G  K KKV+VLGGDGFCGWPT L+LSD GHDVV+VDNLSRR ID ELGC SL
Sbjct:   62 HSSSALFEAAADGVANGTDK-KKVIVLGGDGFCGWPTSLYLSDQGHDVVIVDNLSRRNIDTELGCDSL 128
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A7S2AZ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZ97_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.130e-23
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   16 RFSMAAKP-VTVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            R + A +P V + A K+KKVVVLGGDGFCGWPT LHLSDAGH+V++VDNLSRR ID+ELGC SL
Sbjct:   53 RPAAARQPAVIMAAEKKKKVVVLGGDGFCGWPTTLHLSDAGHEVIMVDNLSRRNIDIELGCSSL 116
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A6H5KES1_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KES1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.460e-22
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   13 SRFSMAAKPVTVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            S  +++A  + +     K +VVLGGDGFCGWPTCLHLSDAGHDV++VDNLSRRRIDLELGC+SL
Sbjct:   71 SSAAVSAGGLCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESL 134
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A7S2RTH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTH5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.630e-22
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    4 ASRSRF-SMAAKPVTVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            ASR+R  S  A  V++ A   KKV+VLGGDGFCGWPT LHLSD GHDVV+VDNLSRR ID ELGC SL
Sbjct:   33 ASRTRLASRRAAAVSMAAESPKKVLVLGGDGFCGWPTALHLSDEGHDVVIVDNLSRRNIDTELGCDSL 100
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A7S3V8N9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8N9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.590e-21
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   58 KRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            ++K +++LGGDGFCGWPTCLHLSDAGHDVV+VDNLSRR ID ELGC SL
Sbjct:   95 EKKTIIILGGDGFCGWPTCLHLSDAGHDVVMVDNLSRRNIDTELGCSSL 143
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A835Z939_9STRA (UDP-sulfoquinovose synthase plastid n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z939_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.770e-21
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   22 SMAAKPVTVGAPKR--------KKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            S   +P T   P R        KK +VLGGDGFCGWPT LHLSDAGH+VV+VDNLSRR IDLELGC+SL
Sbjct:   29 SHGVRPATAAGPLRMASANGSAKKALVLGGDGFCGWPTALHLSDAGHEVVIVDNLSRRNIDLELGCESL 97
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A7S2R5Y0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5Y0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-21
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   49 GAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            G  ++KK++VLGGDGFCGWPT LHLSD GHDVV+VDNLSRR ID+ELGC+SL
Sbjct:   87 GDAEKKKIIVLGGDGFCGWPTSLHLSDGGHDVVVVDNLSRRNIDVELGCESL 138
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A1X6PDC9_PORUM (Epimerase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDC9_PORUM)

HSP 1 Score: 92.8 bits (229), Expect = 1.550e-20
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   28 AAKPV--TVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            AA P   T+  P RK V+VLGGDGFCGWPT LHLS+AGHDV++VDNLSRR+IDLEL C SL
Sbjct:   13 AAPPAEPTMADPGRKTVLVLGGDGFCGWPTALHLSEAGHDVIIVDNLSRRKIDLELECASL 73
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BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Match: A0A1E7FH02_9STRA (Putative plastid UDP-sulfoquinovose synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH02_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.060e-20
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   49 GAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRRIDLELGCKSL 204
            G+ ++KKV++LGGDGFCGWPT L+LSD GHDVV+VDNLSRR+IDL+LGC SL
Sbjct:   43 GSAEKKKVIILGGDGFCGWPTSLYLSDQGHDVVIVDNLSRRKIDLDLGCDSL 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0GHA4_9STRA8.100e-2469.70Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K0TNT9_THAOC1.980e-2369.12Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2AZ97_9STRA8.130e-2371.88Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6H5KES1_9PHAE1.460e-2268.75Epimerase domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2RTH5_9STRA8.630e-2270.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3V8N9_9STRA3.590e-2179.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835Z939_9STRA5.770e-2165.22UDP-sulfoquinovose synthase plastid n=1 Tax=Tribon... [more]
A0A7S2R5Y0_9STRA9.100e-2176.92Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1X6PDC9_PORUM1.550e-2072.13Epimerase domain-containing protein n=1 Tax=Porphy... [more]
A0A1E7FH02_9STRA2.060e-2075.00Putative plastid UDP-sulfoquinovose synthase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20846contigP-wetherbeei_contig20846:1..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSQ1
Preferred nameSQD1
PFAMsAldose_epim,Epimerase
Model size204
Max annot lvl2759|Eukaryota
KEGG rclassRC00563,RC01469
KEGG koko:K01785,ko:K06118
KEGG ReactionR01602,R05775,R10619
KEGG Pathwayko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG ModuleM00632
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Exons1
Evalue1.73e-23
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
Ec32 ortholog descriptionUDP-sulfoquinovose synthase, plastid precursor
Ec32 orthologEc-15_003040.1
EC3.13.1.1,5.1.3.3
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
Cds size180
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.1471884-CDS-P-wetherbeei_contig20846:0..1801683186210.1471884-CDS-P-wetherbeei_contig20846:0..180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20846 1..180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.1572623-UTR-P-wetherbeei_contig20846:180..2041683186210.1572623-UTR-P-wetherbeei_contig20846:180..204Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20846 181..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20846.1.1prot_P-wetherbeei_contig20846.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20846 1..180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20846.1.1

>prot_P-wetherbeei_contig20846.1.1 ID=prot_P-wetherbeei_contig20846.1.1|Name=mRNA_P-wetherbeei_contig20846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MAAKPVTVGAPKRKKVVVLGGDGFCGWPTCLHLSDAGHDVVLVDNLSRRR
IDLELGCKSL
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mRNA from alignment at P-wetherbeei_contig20846:1..204-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20846.1.1 ID=mRNA_P-wetherbeei_contig20846.1.1|Name=mRNA_P-wetherbeei_contig20846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig20846:1..204- (Phaeothamnion wetherbeei SAG_119_79)
CATGCGAGCCGCAGCCGATTTTCCATGGCCGCTAAACCGGTGACGGTGGG
CGCGCCGAAGCGGAAGAAGGTGGTGGTGCTGGGCGGCGACGGCTTCTGCG
GCTGGCCGACGTGTCTGCACTTGTCGGACGCCGGCCATGACGTCGTGCTG
GTCGACAACTTGTCGCGGCGGCGCATCGACCTGGAGCTGGGCTGCAAGTC
GCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20846:1..204-

>mRNA_P-wetherbeei_contig20846.1.1 ID=mRNA_P-wetherbeei_contig20846.1.1|Name=mRNA_P-wetherbeei_contig20846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig20846:1..204- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTAAACCGGTGACGGTGGGCGCGCCGAAGCGGAAGAAGGTGGT
GGTGCTGGGCGGCGACGGCTTCTGCGGCTGGCCGACGTGTCTGCACTTGT
CGGACGCCGGCCATGACGTCGTGCTGGTCGACAACTTGTCGCGGCGGCGC
ATCGACCTGGAGCTGGGCTGCAAGTCGCTG
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