mRNA_P-wetherbeei_contig20843.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20843.1.1
Unique NamemRNA_P-wetherbeei_contig20843.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A6H5JNY5_9PHAE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.680e-27
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:   10 MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            MK KVLFFAS RE+AG   T +ELPG++SS + LR  + +++P L P+AAT+TLA+N EYL  E+DAPLK+GDEVA IPPISGG
Sbjct:    1 MKVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVKKLPGLQPVAATVTLALNQEYLDPEQDAPLKEGDEVAFIPPISGG 84
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: D8LMR2_ECTSI (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.870e-26
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 SPVMKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            SP  + KVLFFAS RE+AG   T +ELPG++SS + LR  + E++P L P+AAT+TLA+N EYL  E+DA LK+GDEVA IPPISGG
Sbjct:   20 SPAQQVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVEKLPGLQPVAATVTLALNQEYLDPEQDATLKEGDEVAFIPPISGG 106
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A835YXW6_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.570e-23
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   10 MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            MK KVLFFAS RELAG     V L G  +ST ALR++L E +PAL P+A  ITLAVNHEY    ++  LKDGDEVALIPPISGG
Sbjct:    1 MKVKVLFFASCRELAGTKEIAVTLEGAENSTEALRKKLVELLPALEPVAWGITLAVNHEYTDPGQNVQLKDGDEVALIPPISGG 84
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A2T7F7T6_9POAL (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7F7T6_9POAL)

HSP 1 Score: 77.0 bits (188), Expect = 2.360e-14
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 SPVMKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            +P +K KVLFFA AREL GV+ + VE+P  A++   L R LAE  P L  I  ++ LA+N EY P  + A + DGDE+A+IPPISGG
Sbjct:   24 APAVKVKVLFFARARELTGVAESSVEVPAGATAGECLARVLAE-FPKLEEIRGSMVLALNEEYAP--DSAKVADGDELAVIPPISGG 107
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A5J4XEY5_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEY5_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 2.630e-14
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   22 VLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            VLFFA  RELAGVS   V+L  +A+ T  L + +  + P L+ I A+  L++N EYL V++  PLKDGDEVA+IPP+SGG
Sbjct:    8 VLFFARGRELAGVSQIAVKLQ-DAADTKQLLKYVLSKYPKLSEIVASTVLSLNQEYLDVDKSVPLKDGDEVAVIPPVSGG 86
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: K0RDW2_THAOC (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDW2_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 3.880e-14
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   19 KVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAA---TITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            +VLFFASARE AG +ST VEL  +A+ T ALR +LA   P LA +      ITLA+N EY+ + E   LK+GD VALIPPISGG
Sbjct:    6 RVLFFASAREAAGTTSTTVELD-DAADTEALREKLAALYPRLAGLVKDEDNITLALNEEYVQMGEAPRLKNGDTVALIPPISGG 88
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A7S4NCV9_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCV9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.040e-13
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   19 KVLFFASARELAGVSSTEVELPGE---ASSTSALRRRLAEQIPALAPIAA---TITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            KVL FASARE AG  ST   + G+    S T+ +RR LAE+ P LAP+     ++TLA+N EY+P  E  PLK GD VALIPPISGG
Sbjct:   14 KVLLFASAREAAGNVSTVECILGKDNGGSDTAVIRRVLAEKYPKLAPLVLDEDSLTLALNEEYVPTGEVLPLKTGDTVALIPPISGG 100
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: L8H968_ACACA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H968_ACACA)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   10 MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            M+ K LFFA++R++ GV   E+    + + T AL   L EQ P L PI  +  LAVN EY+  E    LKDGDE+A+IPPISGG
Sbjct:    1 MRVKCLFFAASRDVTGVQEKELTY-ADGTKTDALIANLIEQFPGLGPIFQSAVLAVNQEYIDPESPIELKDGDEIAVIPPISGG 83
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BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: I0Z8E1_COCSC (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8E1_COCSC)

HSP 1 Score: 73.9 bits (180), Expect = 1.800e-13
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   10 MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            MK   LFFA +RELAG  + +VEL   AS+  AL+  L ++ P L+ I     LA+N EY+  +   PLKDGDEVALIPPISGG
Sbjct:    1 MKISFLFFARSRELAGTDTYDVELADGASTQDALQAVL-KKFPGLSEIEGRCVLALNQEYVDSDSVKPLKDGDEVALIPPISGG 83
[Close]
BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Match: A0A2P6VR71_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR71_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 3.490e-13
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   10 MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAATITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG 261
            M  +VLFFA +RELAG S   + L    S+T+AL  RL EQ P LA +  +  L++N EYL   E+  LK GDEVA+IPPISGG
Sbjct:    1 MDVRVLFFARSRELAGTSEATLALEA-GSTTAALLPRLMEQYPWLAELGGSFVLSLNQEYLAPGEEQVLKAGDEVAVIPPISGG 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20843.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNY5_9PHAE7.680e-2763.10Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
D8LMR2_ECTSI2.870e-2660.92Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A835YXW6_9STRA5.570e-2364.29Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A2T7F7T6_9POAL2.360e-1451.72Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A5J4XEY5_9CHLO2.630e-1452.50Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
K0RDW2_THAOC3.880e-1457.14Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A7S4NCV9_9STRA1.040e-1355.17Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
L8H968_ACACA1.290e-1348.81Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
I0Z8E1_COCSC1.800e-1352.38Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A2P6VR71_9CHLO3.490e-1352.38Molybdopterin synthase sulfur carrier subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20843contigP-wetherbeei_contig20843:104..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMR2
Preferred nameMOCS2
PFAMsThiS
Model size799
Max annot lvl2759|Eukaryota
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019720,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue4.6e-28
EggNOG OGsKOG3474@1|root,KOG3474@2759|Eukaryota
EC2.8.1.12
DescriptionMo-molybdopterin cofactor metabolic process
Cds size255
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.072092-UTR-P-wetherbeei_contig20843:103..6381683186210.072092-UTR-P-wetherbeei_contig20843:103..638Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20843 104..638 -
1683186210.0898955-UTR-P-wetherbeei_contig20843:893..9021683186210.0898955-UTR-P-wetherbeei_contig20843:893..902Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20843 894..902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186210.0820334-CDS-P-wetherbeei_contig20843:638..8931683186210.0820334-CDS-P-wetherbeei_contig20843:638..893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20843 639..893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20843.1.1prot_P-wetherbeei_contig20843.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20843 639..893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20843.1.1

>prot_P-wetherbeei_contig20843.1.1 ID=prot_P-wetherbeei_contig20843.1.1|Name=mRNA_P-wetherbeei_contig20843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MKAKVLFFASARELAGVSSTEVELPGEASSTSALRRRLAEQIPALAPIAA
TITLAVNHEYLPVEEDAPLKDGDEVALIPPISGG*
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mRNA from alignment at P-wetherbeei_contig20843:104..902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20843.1.1 ID=mRNA_P-wetherbeei_contig20843.1.1|Name=mRNA_P-wetherbeei_contig20843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=799bp|location=Sequence derived from alignment at P-wetherbeei_contig20843:104..902- (Phaeothamnion wetherbeei SAG_119_79)
TCTCCAGTAATGAAGGCGAAGGTACTTTTTTTTGCTTCGGCGAGAGAGCT
CGCCGGCGTGTCGAGCACTGAAGTGGAGCTCCCGGGCGAGGCGTCGAGCA
CGTCTGCGCTGCGGCGGCGGCTCGCGGAGCAGATCCCGGCGCTGGCTCCC
ATCGCGGCGACAATCACACTGGCCGTCAACCACGAGTACTTGCCGGTGGA
GGAGGACGCTCCTCTAAAAGACGGCGACGAAGTGGCGCTCATTCCACCCA
TCAGCGGGGGCTGACGACGCACGGGCTGGGTTCTGTCGCTTGCCTTTCGG
ACAGAAATGCTGAAACCTTGGGCGGCGGCGATGGGAGGCACCACCACGAC
CGGCGACGTAGCGAAAGGGAGCGGGAAGACTTTGCGCCAGAAACTGCTTC
AGGACGCCGCTTTCCGGAATTCGACGGCCAGCCTGGCTGAGGTGACTGCT
CGCCTTTTGCTCGGCCGATATGAGTCCTCATCGCTGTGGCGGTTCCAGCC
AGTGCATGGCAGCGAGGTACGATCCAGAAGGCTTGTCACCTGGATTGAGG
ACATTGCCTCCCCCCTTGCCGACGGCGCCGCCGCAGCCGTTGCCGTCGTC
GCCACCGCCGCCGCTGCGGCCGAAAATGGCCATGAAGCCGGCCAGCCGGC
GGCTTGACACGGCCGGCCGCTGGTCCCAAGGCGACCTAGAGCCTCCTGGC
TGCCGCGGCGGCGAGGCAACGAGCAACACTTTCGTTTGAGGAAGCTGTAT
ATGATATACTTACACGCTTTTCTCTCACGGTATTTTTGGTTGTTGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20843:104..902-

>mRNA_P-wetherbeei_contig20843.1.1 ID=mRNA_P-wetherbeei_contig20843.1.1|Name=mRNA_P-wetherbeei_contig20843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig20843:104..902- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGAAGGTACTTTTTTTTGCTTCGGCGAGAGAGCTCGCCGGCGT
GTCGAGCACTGAAGTGGAGCTCCCGGGCGAGGCGTCGAGCACGTCTGCGC
TGCGGCGGCGGCTCGCGGAGCAGATCCCGGCGCTGGCTCCCATCGCGGCG
ACAATCACACTGGCCGTCAACCACGAGTACTTGCCGGTGGAGGAGGACGC
TCCTCTAAAAGACGGCGACGAAGTGGCGCTCATTCCACCCATCAGCGGGG
GCTGA
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