mRNA_P-wetherbeei_contig2084.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2084.2.1
Unique NamemRNA_P-wetherbeei_contig2084.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: D7FJH9_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.940e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEIR 177
            Q+QEAE+++K  R  +FEEGRRLKQ+  +ERAKLE  RD MV DME +G NPKYL+E++
Sbjct:  446 QVQEAEAKRKADRAAKFEEGRRLKQEYTMERAKLEAMRDKMVEDMEKRGINPKYLTEMK 504          
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: A0A835YY84_9STRA (Tumor suppressor, Mitostatin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY84_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.420e-12
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEIR 177
            Q+Q+AE+R++  R  +FEEGRRL+Q+ A ERA+LE  RD MV DM  KGFNPKYLSE+R
Sbjct:  440 QVQDAEARRRAERCHKFEEGRRLQQEAAGERARLEAMRDRMVHDMAEKGFNPKYLSEMR 498          
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: A0A7S2V0X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0X2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-10
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEIR 177
            QI EAE+++   +  +FEEGR+L Q+   ERAKLE  RD MV+D+E KG NPKYL+E++
Sbjct:  220 QINEAEAKRSQEQNAKFEEGRKLNQEFLSERAKLEAIRDKMVSDLEKKGINPKYLAEMK 278          
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: A0A7S2L9P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L9P2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.940e-7
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEI 174
            QI+E ++ K    + +F+EG R+KQ+ A ERAKLE  RD MVADM+AKG N +Y  E+
Sbjct:   71 QIEENKATKAARDRQKFQEGGRIKQELAEERAKLEGIRDKMVADMKAKGINERYYGEM 128          
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: A0A8J2SPE8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPE8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.130e-6
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   28 KNGRQDRFE----EGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEIR 177
            + GR D+F+    EGR ++ + A+ERAKLE  RD M+ DM  +G+NP YL+EIR
Sbjct:  410 RRGRTDKFQQAQDEGRAMRNEFAMERAKLEAIRDAMIEDMLKRGYNPNYLNEIR 463          
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Match: A0A812Z6W8_SYMMI (CFAP45 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z6W8_SYMMI)

HSP 1 Score: 48.1 bits (113), Expect = 3.510e-5
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGFNPKYLSEIR 177
            QI EAE +++  R  +++EG   + +   ++A+LE  R+ MV D+E KG NPKY+SE++
Sbjct:   98 QIDEAEEKRRRDRMAKYDEGSGNRDKFIQDQARLEAIREKMVRDLEEKGVNPKYMSEMK 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2084.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJH9_ECTSI6.940e-1361.02TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YY84_9STRA2.420e-1262.71Tumor suppressor, Mitostatin-domain-containing pro... [more]
A0A7S2V0X2_9STRA4.970e-1054.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2L9P2_9STRA3.940e-751.72Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8J2SPE8_9STRA3.130e-650.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A812Z6W8_SYMMI3.510e-540.68CFAP45 protein n=1 Tax=Symbiodinium microadriaticu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2084contigP-wetherbeei_contig2084:5816..5992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size177
Hectar predicted targeting categoryother localisation
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.9821286-CDS-P-wetherbeei_contig2084:5815..59921683186209.9821286-CDS-P-wetherbeei_contig2084:5815..5992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2084 5816..5992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2084.2.1prot_P-wetherbeei_contig2084.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2084 5816..5992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2084.2.1

>prot_P-wetherbeei_contig2084.2.1 ID=prot_P-wetherbeei_contig2084.2.1|Name=mRNA_P-wetherbeei_contig2084.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
QIQEAESRKKNGRQDRFEEGRRLKQQGALERAKLEQARDDMVADMEAKGF
NPKYLSEIR
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mRNA from alignment at P-wetherbeei_contig2084:5816..5992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2084.2.1 ID=mRNA_P-wetherbeei_contig2084.2.1|Name=mRNA_P-wetherbeei_contig2084.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig2084:5816..5992- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCCAGGAGGCCGAATCCCGCAAGAAGAACGGGCGGCAGGACCGGTT CGAGGAGGGGCGGCGGCTCAAGCAGCAGGGCGCCCTCGAGCGCGCCAAGC TTGAGCAGGCGCGAGACGACATGGTGGCCGACATGGAGGCCAAGGGCTTC AACCCCAAGTACCTCTCGGAGATCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2084:5816..5992-

>mRNA_P-wetherbeei_contig2084.2.1 ID=mRNA_P-wetherbeei_contig2084.2.1|Name=mRNA_P-wetherbeei_contig2084.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig2084:5816..5992- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCCAGGAGGCCGAATCCCGCAAGAAGAACGGGCGGCAGGACCGGTT
CGAGGAGGGGCGGCGGCTCAAGCAGCAGGGCGCCCTCGAGCGCGCCAAGC
TTGAGCAGGCGCGAGACGACATGGTGGCCGACATGGAGGCCAAGGGCTTC
AACCCCAAGTACCTCTCGGAGATCCGC
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