mRNA_P-wetherbeei_contig2083.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2083.2.1
Unique NamemRNA_P-wetherbeei_contig2083.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: W7T921_9STRA (Mfs monosaccharide transporter n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T921_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.780e-30
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKELWS 917
            YQ+E AP KVRG++V++ QL IT GILLA  LN+G   W +GWR SYG  GFF+  L LLMI LPE+PRWLV  G+ E A+  LGR     EVE     IE A+  E+ ++ G WK+L S
Sbjct:  218 YQSETAPPKVRGLVVSIQQLSITAGILLAGGLNVGLQHWDEGWRISYGGKGFFSLLLMLLMICLPESPRWLVAQGKSEAAKASLGRIRQEEEVEGELAGIEEAVEAEAQMEKGAWKDLVS 337          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A4D9CY86_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY86_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.990e-28
Identity = 63/127 (49.61%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  558 YQAEMAPEKV-------RGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKELWS 917
            YQ+E AP KV       RG++V++ QL IT GILLA  LN+G   W +GWR SYG  GFF+  L LLMI LPE+PRWLV  G+ E A+  LGR     EVE     IE A+  E+ ++ G WK+L S
Sbjct:  171 YQSETAPPKVADFPFDVRGLVVSIQQLSITAGILLAGGLNVGLQHWDEGWRISYGGKGFFSLLLMLLMICLPESPRWLVAQGKSEAAKASLGRIRQEEEVEGELAGIEEAVEAEAQMEKGAWKDLVS 297          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A836C7Y4_9STRA (General substrate transporter n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.860e-24
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVE 839
            YQ+E+APE +RG+LV L QL ITFGI LAA  N+G   WS+GWR SY  NGF + AL +LM+  PE+PRWL + G+ E+AR VL +    YEV+
Sbjct:  158 YQSEIAPESIRGLLVALQQLSITFGIFLAALANVGLKTWSEGWRLSYCGNGFLSFALIILMMFCPESPRWLYKVGKVEQARAVLHKVRQDYEVD 251          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A4D9CNV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNV7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.290e-20
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  585 VRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAI 869
            VRG++V++ +L IT GILLA  LN+G   W +GWR SYG  GFF+  L LLM+ LPE+P WLV  G+ E A+  LG      EVE     +EAA+
Sbjct:   12 VRGLVVSIKKLSITAGILLAGGLNVGLQHWDEGWRISYGDKGFFSLLLMLLMLCLPESPCWLVAQGKSETAKAFLGGIRQGDEVEGELAGMEAAV 106          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A6I6S0U3_9ACTN (Sugar porter family MFS transporter n=3 Tax=Streptomyces TaxID=1883 RepID=A0A6I6S0U3_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 5.830e-18
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKEL 911
            Y +E+AP  +RG LV+ N L I  G LLA  +N     W + WR+  GL    A ALFL ++ LP+TPRW +  GRP+EA  VL RT  + +V A   +I+ A + E+D   G W+EL
Sbjct:  161 YLSEIAPPHIRGRLVSFNSLMIVSGQLLAYLINAVLAHW-EAWRWMLGLAALPAVALFLGVLFLPDTPRWYISRGRPDEAAAVLHRTLPADDVPAELGRIDRARSLEADAQRGAWREL 277          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A166SQL3_9EURY (MFS transporter n=1 Tax=Haladaptatus sp. R4 TaxID=1679489 RepID=A0A166SQL3_9EURY)

HSP 1 Score: 93.6 bits (231), Expect = 9.810e-18
Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKELW 914
            Y +E+AP K+RG LV+LNQL +T GILLA  +N  F     GWR+  G     AAAL L M+ +PE+PRWLV+NGR +EAR VL RT     +E   + IE     E + DA    E W
Sbjct:  128 YNSEIAPPKIRGSLVSLNQLAVTSGILLAYLVNYVFKG-PGGWRWMLGSGVVPAAALALGMLFMPESPRWLVENGRLDEARSVLSRTRSEDRIEEEIQNIEETAKVEEN-DASTLLESW 244          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: UPI001FF39A2C (sugar porter family MFS transporter n=1 Tax=Halovarius sp. SQT-29-1 TaxID=2931975 RepID=UPI001FF39A2C)

HSP 1 Score: 92.4 bits (228), Expect = 2.460e-17
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEES 881
            Y +E++P K+RG LV+LNQL IT GIL+A  +N  F++  + WR+  GL    AA LFL M+ +PE+PRWL + GR   AR VL RT    +V+A  R+I   I  ES
Sbjct:  138 YISEISPPKIRGSLVSLNQLTITSGILIAYLVNFAFSDGGE-WRWMLGLGMVPAAVLFLGMVFMPESPRWLYEQGRESAARDVLSRTRAEAKVDAELREIRETIRTES 244          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A839DY93_9PSEU (Sugar porter (SP) family MFS transporter n=2 Tax=Halosaccharopolyspora lacisalsi TaxID=1000566 RepID=A0A839DY93_9PSEU)

HSP 1 Score: 91.7 bits (226), Expect = 4.350e-17
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKELWS 917
            Y AE++P ++RG L +LNQL IT GILLA  ++     W + WR+  GL    A ALF+ M+ +PETPRWL    R +EAR VL RT    E++    +IEAA  +  + +AG W++L S
Sbjct:  132 YIAEISPTRIRGTLTSLNQLLITTGILLAYVVDYALAPW-EAWRWMLGLGVIPAVALFVGMLFMPETPRWLASRNRMDEAREVLERTRAPEEIDEAFEEIEAAERQARE-EAG-WRDLTS 248          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A4R6S795_9PSEU (Sugar porter (SP) family MFS transporter n=1 Tax=Labedaea rhizosphaerae TaxID=598644 RepID=A0A4R6S795_9PSEU)

HSP 1 Score: 91.7 bits (226), Expect = 4.350e-17
Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  528 SSARPTNERRYQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEESDIDAGKWKELWS 917
            SS  PT    Y AE+AP K RG +  LNQ+FI  GIL+A  ++ G    S  WR  +      A  LF  +++LPETPRWL++NGR EEAR VL  TH + +VE    +I   I  +++   G+ ++LW+
Sbjct:  121 SSTVPT----YMAELAPAKWRGAMGALNQIFIVLGILIAFLVSYGLGS-SSNWRLMFAGAIVPAVVLFFGLMLLPETPRWLLKNGREEEARAVLQSTHRAGDVEGEITQIREVIRLDTE-QKGRVRDLWA 244          
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Match: A0A5P9P1V8_9EURY (Sugar porter family MFS transporter n=1 Tax=Natronorubrum aibiense TaxID=348826 RepID=A0A5P9P1V8_9EURY)

HSP 1 Score: 91.3 bits (225), Expect = 6.140e-17
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  558 YQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQGWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSYEVEATARKIEAAIAEES 881
            Y +E++P K+RG LV+LNQL IT GIL+A  +N  F+   + WR+  GL    AA LF+ M+ +PE+PRWL + GR  +AR VL RT     V+   R+I+  I  ES
Sbjct:  140 YISEISPPKIRGSLVSLNQLTITSGILIAYLVNYAFSSGGE-WRWMLGLGMIPAAVLFVGMVFMPESPRWLYEQGRESDARAVLSRTRTESRVDEELREIKTTIKTES 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T921_9STRA3.780e-3052.50Mfs monosaccharide transporter n=1 Tax=Nannochloro... [more]
A0A4D9CY86_9STRA3.990e-2849.61MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A836C7Y4_9STRA4.860e-2455.32General substrate transporter n=4 Tax=Tribonema mi... [more]
A0A4D9CNV7_9STRA4.290e-2049.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6I6S0U3_9ACTN5.830e-1843.22Sugar porter family MFS transporter n=3 Tax=Strept... [more]
A0A166SQL3_9EURY9.810e-1847.06MFS transporter n=1 Tax=Haladaptatus sp. R4 TaxID=... [more]
UPI001FF39A2C2.460e-1747.22sugar porter family MFS transporter n=1 Tax=Halova... [more]
A0A839DY93_9PSEU4.350e-1744.17Sugar porter (SP) family MFS transporter n=2 Tax=H... [more]
A0A4R6S795_9PSEU4.350e-1741.54Sugar porter (SP) family MFS transporter n=1 Tax=L... [more]
A0A5P9P1V8_9EURY6.140e-1745.37Sugar porter family MFS transporter n=1 Tax=Natron... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2083contigP-wetherbeei_contig2083:1145..2328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog66373.JOFQ01000001_gene1939
PFAMsSugar_tr
Model size919
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.13e-19
EggNOG OGsCOG0477@1|root,COG0477@2|Bacteria,2HC9X@201174|Actinobacteria
DescriptionBelongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Cds size687
COG categoryEGP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.777595-UTR-P-wetherbeei_contig2083:1144..13741683186209.777595-UTR-P-wetherbeei_contig2083:1144..1374Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2083 1145..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.7883909-CDS-P-wetherbeei_contig2083:1374..19771683186209.7883909-CDS-P-wetherbeei_contig2083:1374..1977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2083 1375..1977 +
1683186209.7990744-CDS-P-wetherbeei_contig2083:2244..23281683186209.7990744-CDS-P-wetherbeei_contig2083:2244..2328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2083 2245..2328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2083.2.1prot_P-wetherbeei_contig2083.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2083 1375..2328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2083.2.1

>prot_P-wetherbeei_contig2083.2.1 ID=prot_P-wetherbeei_contig2083.2.1|Name=mRNA_P-wetherbeei_contig2083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
MCRPSARSSSRWIFRCCTSAASSAASASAASAWSPQCELPRLHCFFLLAL
SQPVVTLMPGLVLSHSRPCRKRSFPLPTFVLLDVALFPLTSLHPVSSHRS
SARPTNERRYQAEMAPEKVRGMLVTLNQLFITFGILLAAALNIGFNEWSQ
GWRFSYGLNGFFAAALFLLMIVLPETPRWLVQNGRPEEARVVLGRTHHSY
EVEATARKIEAAIAEESDIDAGKWKELWS
back to top

mRNA from alignment at P-wetherbeei_contig2083:1145..2328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2083.2.1 ID=mRNA_P-wetherbeei_contig2083.2.1|Name=mRNA_P-wetherbeei_contig2083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1184bp|location=Sequence derived from alignment at P-wetherbeei_contig2083:1145..2328+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCGTCTTCATAGTCGGCGCCATCATCCAGGTACACAAAACGTGGCCTA CAGAGAGATCTTTTTTCGTGTGTTGGGGAAAGAACTTCATTTTTGATTGG CGGGCTGGCGGTAGCGAACGAGTCGCAACGACTGGCCGGATACGAGCAAA AGAAGTCGTCCAGTCCAACCCAACGCCGTTTCCCGCTTGCCATCTCACCA GCTTGTCATCTCGCCCGCTTGCCCGCTGTCATGTGCCGTCCGTCTGCTCG CAGTTCATCGCGGTGGATCTTTCGATGCTGTACGTCGGCCGCTTCATCGG CGGCCTCGGCGTCGGCGGCCTCAGCATGGTCTCCCCAATGTGAGCTGCCT CGCCTCCACTGTTTTTTTCTCCTCGCTCTGTCGCAACCCGTCGTCACGCT AATGCCGGGCCTTGTTCTTTCCCACTCTAGACCGTGCCGGAAGCGTTCTT TCCCACTGCCCACCTTCGTTCTTCTCGACGTCGCTCTGTTCCCTCTCACT TCGCTTCACCCTGTCTCATCTCATCGATCGTCCGCTCGGCCAACAAATGA ACGCAGGTACCAGGCGGAGATGGCCCCCGAGAAGGTCCGTGGCATGCTTG TGACGCTCAACCAGCTCTTCATCACCTTCGGAATCCTCCTGGCGGCCGCC CTCAACATCGGTTTCAACGAATGGTCCCAGGGTTGGCGATTCTCGTACGG CCTCAATGGCTTCTTCGCGGCCGCCCTCTTCTTGCTCATGATTGTCCTGC CCGAGACGCCCCGCTGGCTGGTCCAGAACGGCCGCCCTGAAGAGGCGCGC GTCGTTCTCGGCCGCACCCATCATTCTTACGAGGTCCGTCGCTTGTGCCG GGGATATCAGCTCCCTCTATGGGAAGATTGTTTCTTGGCTCGCATCGTTT TCGAGTCCGGGTCGGGATTATCTCCACCATAATCACACTTGTTCCTGCAA AGTTCTACTCGTCCTAACAACTCTGCTTTTATCTTTATTCTGCCGCCGCC GCTTCCGCCCGACCGCTGCCACCTGATCGTTGTTGCTGTCGCCGTGTCGC CGCCGCCGCCGCCGCCGGCTGACCGCCGCCGCTGCTGGTACCCACCGTAG GTGGAAGCGACGGCCCGCAAGATAGAGGCGGCGATCGCTGAGGAGTCGGA CATCGACGCCGGCAAATGGAAGGAACTGTGGAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2083:1145..2328+

>mRNA_P-wetherbeei_contig2083.2.1 ID=mRNA_P-wetherbeei_contig2083.2.1|Name=mRNA_P-wetherbeei_contig2083.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig2083:1145..2328+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCCGTCCGTCTGCTCGCAGTTCATCGCGGTGGATCTTTCGATGCTG
TACGTCGGCCGCTTCATCGGCGGCCTCGGCGTCGGCGGCCTCAGCATGGT
CTCCCCAATGTGAGCTGCCTCGCCTCCACTGTTTTTTTCTCCTCGCTCTG
TCGCAACCCGTCGTCACGCTAATGCCGGGCCTTGTTCTTTCCCACTCTAG
ACCGTGCCGGAAGCGTTCTTTCCCACTGCCCACCTTCGTTCTTCTCGACG
TCGCTCTGTTCCCTCTCACTTCGCTTCACCCTGTCTCATCTCATCGATCG
TCCGCTCGGCCAACAAATGAACGCAGGTACCAGGCGGAGATGGCCCCCGA
GAAGGTCCGTGGCATGCTTGTGACGCTCAACCAGCTCTTCATCACCTTCG
GAATCCTCCTGGCGGCCGCCCTCAACATCGGTTTCAACGAATGGTCCCAG
GGTTGGCGATTCTCGTACGGCCTCAATGGCTTCTTCGCGGCCGCCCTCTT
CTTGCTCATGATTGTCCTGCCCGAGACGCCCCGCTGGCTGGTCCAGAACG
GCCGCCCTGAAGAGGCGCGCGTCGTTCTCGGCCGCACCCATCATTCTTAC
GAGGTGGAAGCGACGGCCCGCAAGATAGAGGCGGCGATCGCTGAGGAGTC
GGACATCGACGCCGGCAAATGGAAGGAACTGTGGAGC
back to top