mRNA_P-wetherbeei_contig20802.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20802.3.1
Unique NamemRNA_P-wetherbeei_contig20802.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: D7FJ20_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ20_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.730e-34
Identity = 73/171 (42.69%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   13 PVAVFCRQCGDAFCKPCFDASHARGRRREHALIDATPIPMCGVCSYQHAARLCET---SSKPKGFFCDVCFFNAHPDIE-ANRRELQGVELCVSSSPAKKQATAFTADGAGGSGGAAHKSKALVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYY 513
            PV   C  C D++C+ CF A H RG+RR H    A  I MC VC YQHA R+CET    +     +CDVCFFN HP ++  ++ E   +E           A A+    A    G  H+   LVV CV C+ YAARW CDDC +V+C  C+A +H HG    H  E LPYY
Sbjct: 1046 PVRRMCTSCRDSYCEECFQALHGRGKRRAHV---APVIHMCCVCKYQHATRICETCTFKTSTTSAYCDVCFFNKHPGLDNLSKAEAAAIEE-GRGXXXXXXAKAWALTAARKQEGWNHRWTPLVVTCVECRRYAARWLCDDCEEVYCVGCYAFVHRHGTKVNHGAEKLPYY 1212          
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: A0A6H5KGW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.940e-33
Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   13 PVAVFCRQCGDAFCKPCFDASHARGRRREHALIDATPIPMCGVCSYQHAARLCETSS---KPKGFFCDVCFFNAHPDIE-ANRRELQGVELCVSSSPAKKQATAFTADGAGGSG---------GAAHKSKA---LVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYY 513
            PV   C  C D++C+ CF A H RG+RR H    A  I +C VC YQHA R+CET +        +CDVCFFN HP ++  ++ E   +E                 +G GG G          AA K +    LVV CV C+ YAARW CDDC +V+C  C+A +H HG    H  E LPYY
Sbjct:  244 PVRRMCTSCRDSYCEECFQALHGRGKRRAHV---APVIHVCCVCKYQHATRICETCTFKVSTTSAYCDVCFFNKHPGLDNLSKAEAAAIE-----------------EGRGGGGVGRAKAWSLTAAKKQEGWTPLVVTCVECRRYAARWLCDDCEEVYCVGCYAFVHKHGTKVNHGAEKLPYY 406          
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: F0WT96_9STRA (Uncharacterized protein AlNc14C247G9581 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WT96_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.320e-13
Identity = 50/166 (30.12%), Postives = 68/166 (40.96%), Query Frame = 1
Query:   22 VFCRQCGDAFCKPCFDASHARGRRREHALIDATPIPMCGVCSYQHAARLCETSSKPKGFFCDVCFFNAHPDIEANRRELQGVELCVSSSPAKKQATAFTADGAGGSGGAAHKSKALVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYYTV 519
            V+C QC D  CK CF   H  G R          + +C  C  Q A R C   +  K  FCD CF   H  +++     +G E   + S  K++                H  +  VV CV C     +W+CDDC D++C+RC    H       HSV  + Y  V
Sbjct: 1085 VYCLQCEDVMCKACFRRDH--GTRIAFNHHQPKMLKLCCNCENQIATRECLICADGKTSFCDTCFCFLHTSLKSAH---EGAE---NRSDTKQK----------------HPFRGYVVMCVECGERTGQWKCDDCDDLYCKRCLTVSHGKLYRLDHSVHQVNYVAV 1226          
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: A0A7S2W5Q8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5Q8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.810e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  352 HKSKALVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYYT 516
            HK + LV+PCV CK  AARWRCDDC DV+C++C+  +H  G  Q H  + L +YT
Sbjct:    3 HKWEWLVMPCVECKELAARWRCDDCHDVYCKQCYGFIHLKGARQSHRAQALSWYT 57          
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: A0A7S2NSB5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSB5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.950e-10
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  352 HKSKALVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYYT 516
            HK   L++ C  C   AA+WRC++C D++C RCF  LH  G+   H  +PLPYYT
Sbjct:   63 HKFSYLMMQCSECSQCAAQWRCNNCDDIYCSRCFVKLHQRGHRIKHEGQPLPYYT 117          
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Match: A0A7S1UFF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFF4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.770e-9
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  367 LVVPCVSCKSYAARWRCDDCADVFCRRCFAALHAHGNSQLHSVEPLPYYT 516
            LV+ C  C  YAARWRC +C ++FC +C + LH  G+   H+ E LPYYT
Sbjct:   44 LVISCSECGFYAARWRCQECVEIFCTKCLSYLHNKGHRLNHTCEALPYYT 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20802.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJ20_ECTSI2.730e-3442.69Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
A0A6H5KGW1_9PHAE9.940e-3340.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WT96_9STRA2.320e-1330.12Uncharacterized protein AlNc14C247G9581 n=1 Tax=Al... [more]
A0A7S2W5Q8_9STRA3.810e-1252.73Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2NSB5_9STRA3.950e-1047.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UFF4_9STRA7.770e-950.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20802contigP-wetherbeei_contig20802:26..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJ20
PFAMsIQ,p25-alpha
Model size519
Max annot lvl2759|Eukaryota
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.48e-35
EggNOG OGs2C7AG@1|root,2RKVS@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size519
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.1492531-CDS-P-wetherbeei_contig20802:25..3681683186209.1492531-CDS-P-wetherbeei_contig20802:25..368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20802 26..368 -
1683186209.1585376-CDS-P-wetherbeei_contig20802:485..6611683186209.1585376-CDS-P-wetherbeei_contig20802:485..661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20802 486..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20802.3.1prot_P-wetherbeei_contig20802.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20802 26..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20802.3.1

>prot_P-wetherbeei_contig20802.3.1 ID=prot_P-wetherbeei_contig20802.3.1|Name=mRNA_P-wetherbeei_contig20802.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
ALAAPVAVFCRQCGDAFCKPCFDASHARGRRREHALIDATPIPMCGVCSY
QHAARLCETSSKPKGFFCDVCFFNAHPDIEANRRELQGVELCVSSSPAKK
QATAFTADGAGGSGGAAHKSKALVVPCVSCKSYAARWRCDDCADVFCRRC
FAALHAHGNSQLHSVEPLPYYTV
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mRNA from alignment at P-wetherbeei_contig20802:26..661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20802.3.1 ID=mRNA_P-wetherbeei_contig20802.3.1|Name=mRNA_P-wetherbeei_contig20802.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig20802:26..661- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCCGCCCCTGTGGCAGTGTTCTGCCGGCAGTGCGGCGACGCCTT TTGCAAGCCGTGCTTCGACGCATCGCACGCGCGGGGGCGGCGGCGCGAAC ACGCGCTGATAGACGCTACTCCCATACCGATGTGCGGCGTCTGTTCCTAC CAGCACGCAGCACGGCTTTGCGAGACGTGCTGTGTCAGCAGCCTCGGCAG TGGGAGCGACGGCAGAGGCAGGAGTAGAAATGGTAGTAGAAGCGGTAGTA GACGCAGCGTCGGCGGCAGCGGCGGTAGTGGTGTCGGCAGGAGCAGCAGC AAACCCAAGGGCTTCTTCTGCGATGTTTGCTTTTTCAACGCTCACCCCGA CATAGAAGCGAATCGGAGGGAGCTTCAAGGCGTCGAGCTGTGCGTTTCTT CTTCTCCAGCAAAAAAGCAAGCCACCGCTTTTACCGCTGACGGCGCGGGC GGCAGCGGTGGCGCTGCCCACAAGTCCAAGGCCCTTGTGGTTCCCTGCGT GTCCTGCAAGAGCTACGCCGCGCGGTGGCGCTGCGACGACTGCGCGGACG TCTTCTGCCGCCGCTGCTTCGCCGCACTGCACGCCCATGGTAACTCGCAG CTGCACAGCGTCGAGCCGCTCCCCTACTACACCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20802:26..661-

>mRNA_P-wetherbeei_contig20802.3.1 ID=mRNA_P-wetherbeei_contig20802.3.1|Name=mRNA_P-wetherbeei_contig20802.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig20802:26..661- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCCGCCCCTGTGGCAGTGTTCTGCCGGCAGTGCGGCGACGCCTT
TTGCAAGCCGTGCTTCGACGCATCGCACGCGCGGGGGCGGCGGCGCGAAC
ACGCGCTGATAGACGCTACTCCCATACCGATGTGCGGCGTCTGTTCCTAC
CAGCACGCAGCACGGCTTTGCGAGACCAGCAGCAAACCCAAGGGCTTCTT
CTGCGATGTTTGCTTTTTCAACGCTCACCCCGACATAGAAGCGAATCGGA
GGGAGCTTCAAGGCGTCGAGCTGTGCGTTTCTTCTTCTCCAGCAAAAAAG
CAAGCCACCGCTTTTACCGCTGACGGCGCGGGCGGCAGCGGTGGCGCTGC
CCACAAGTCCAAGGCCCTTGTGGTTCCCTGCGTGTCCTGCAAGAGCTACG
CCGCGCGGTGGCGCTGCGACGACTGCGCGGACGTCTTCTGCCGCCGCTGC
TTCGCCGCACTGCACGCCCATGGTAACTCGCAGCTGCACAGCGTCGAGCC
GCTCCCCTACTACACCGTC
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