mRNA_P-wetherbeei_contig20799.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20799.3.1
Unique NamemRNA_P-wetherbeei_contig20799.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A2E2BE41_9GAMM (Twin-arginine translocase subunit TatB n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2BE41_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 5.180e-28
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFKALNAEFLAEDRRLKELARMP 240
            MFD+GFWEL +IF+VAL+VVGPE+MP LI+  GQW+G++QR+ R  R E EREA T E+K LN +FL EDR+LK+LAR P
Sbjct:    1 MFDIGFWELGVIFIVALLVVGPEKMPALIKGAGQWIGQLQRMIRSARYEIEREAQTDEYKQLNKDFLEEDRKLKDLAREP 80          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A7C6RV15_9GAMM (Sec-independent protein translocase protein TatB n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6RV15_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-17
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MF++GFWELALI VVAL+VVGPER+PGL RT G WLG+ +R+  E++AE +RE H +E K
Sbjct:    1 MFEIGFWELALIGVVALIVVGPERLPGLARTAGLWLGKARRMVAEVKAEVDRELHLEEIK 60          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A2E5NIR8_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5NIR8_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 6.950e-17
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFKALNAE 195
            MFDVGFWE++LIFVVAL+VVGPE++PGL RT G ++G+ +R A  +R E +RE H+ E K L  E
Sbjct:    1 MFDVGFWEVSLIFVVALLVVGPEKLPGLARTVGLYVGKARRYAEHVRREIDREVHSAEMKELEKE 65          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A846T781_9CYAN (Sec-independent protein translocase protein TatB homolog n=1 Tax=Synechococcaceae cyanobacterium SM1_2_3 TaxID=2720456 RepID=A0A846T781_9CYAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-16
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MFD+ FWELA+I VVAL+VVGPER+PGL RTTG+WLG+ +R+  E++AE +RE    E K
Sbjct:    1 MFDISFWELAMIGVVALIVVGPERLPGLARTTGRWLGKARRMVAEVKAEVDRELQLDELK 60          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A3D5DCH3_9GAMM (Twin-arginine translocase subunit TatB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCH3_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 1.150e-16
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFKALNAEFLAE 207
            M D+GFWE ALI +VALVVVGPER PG+ RT GQ +GR +R  RELR E ER+   +E   +N  FL E
Sbjct:    1 MLDIGFWEFALIGIVALVVVGPERFPGMARTAGQLIGRAKRAMRELRYELERDLEVEETDGVNDAFLDE 69          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A3D0SJX9_9GAMM (Sec-independent protein translocase protein TatB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0SJX9_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 1.260e-16
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MF++GFWELALI VVA++VVGPER+PGL RT G WLG+ +R+  +++AE +RE H +E K
Sbjct:    1 MFEIGFWELALIGVVAMIVVGPERLPGLARTAGLWLGKARRMVADIKAEVDRELHLEEIK 60          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A3S0VXX8_9GAMM (Sec-independent protein translocase protein TatB n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0VXX8_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 3.470e-16
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MF++GFWEL ++ VVAL+VVGPER+PGL RT G WLG+ +R+  E++AE +RE H +E K
Sbjct:    1 MFEIGFWELVMVGVVALIVVGPERLPGLARTAGLWLGKARRIFAEVKAEVDRELHLEELK 60          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A3B8X4B0_9GAMM (Sec-independent protein translocase protein TatB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3B8X4B0_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 4.860e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MFD+GFWEL +I VVAL+VVGPER+P L R+ G W+GR++RVA   R + ERE H +E K
Sbjct:    1 MFDIGFWELGVIGVVALLVVGPERLPALARSAGLWIGRLRRVANGFREDLERELHAEELK 60          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A523P068_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P068_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 8.990e-16
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFKALNAEF 198
            MFDVGFWE++LI +VALVVVGP+R+PG++RT GQ +GR +R  REL+ + EREA  +E   L   F
Sbjct:    1 MFDVGFWEISLIAIVALVVVGPDRLPGMMRTAGQLIGRAKRTMRELKFDLEREAEFEEVGRLARNF 66          
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Match: A0A3S1BW59_9GAMM (Sec-independent protein translocase protein TatB n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S1BW59_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-15
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEFEREAHTQEFK 180
            MF++GFWEL L+ VVAL+VVGPE++PGL RT G WLGR +R+  E++A+ +RE H +E K
Sbjct:    1 MFEIGFWELVLVGVVALLVVGPEKLPGLARTAGLWLGRARRMIAEVKADVDRELHLEELK 60          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20799.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2BE41_9GAMM5.180e-2863.75Twin-arginine translocase subunit TatB n=2 Tax=Gam... [more]
A0A7C6RV15_9GAMM2.410e-1763.33Sec-independent protein translocase protein TatB n... [more]
A0A2E5NIR8_9PROT6.950e-1758.46Sec-independent protein translocase protein TatB n... [more]
A0A846T781_9CYAN1.040e-1661.67Sec-independent protein translocase protein TatB h... [more]
A0A3D5DCH3_9GAMM1.150e-1657.97Twin-arginine translocase subunit TatB n=1 Tax=Gam... [more]
A0A3D0SJX9_9GAMM1.260e-1660.00Sec-independent protein translocase protein TatB n... [more]
A0A3S0VXX8_9GAMM3.470e-1658.33Sec-independent protein translocase protein TatB n... [more]
A0A3B8X4B0_9GAMM4.860e-1660.00Sec-independent protein translocase protein TatB n... [more]
A0A523P068_9PROT8.990e-1657.58Sec-independent protein translocase protein TatB n... [more]
A0A3S1BW59_9GAMM1.060e-1558.33Sec-independent protein translocase protein TatB n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20799contigP-wetherbeei_contig20799:805..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog765914.ThisiDRAFT_0558
Preferred nametatB
PFAMsMttA_Hcf106
Model size240
Max annot lvl135613|Chromatiales
KEGG koko:K03117
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.27e-15
EggNOG OGsCOG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,1SD9K@1236|Gammaproteobacteria,1WZ88@135613|Chromatiales
DescriptionPart of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation
Cds size240
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.8687148-CDS-P-wetherbeei_contig20799:804..10441683186208.8687148-CDS-P-wetherbeei_contig20799:804..1044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20799 805..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20799.3.1prot_P-wetherbeei_contig20799.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20799 805..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20799.3.1

>prot_P-wetherbeei_contig20799.3.1 ID=prot_P-wetherbeei_contig20799.3.1|Name=mRNA_P-wetherbeei_contig20799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MFDVGFWELALIFVVALVVVGPERMPGLIRTTGQWLGRMQRVARELRAEF
EREAHTQEFKALNAEFLAEDRRLKELARMP
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mRNA from alignment at P-wetherbeei_contig20799:805..1044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20799.3.1 ID=mRNA_P-wetherbeei_contig20799.3.1|Name=mRNA_P-wetherbeei_contig20799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig20799:805..1044+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGACGTCGGCTTCTGGGAGCTCGCGCTGATCTTCGTGGTTGCGCT GGTGGTGGTCGGCCCCGAGCGCATGCCGGGCTTGATCCGCACCACCGGGC AATGGTTGGGACGCATGCAGCGCGTCGCGCGCGAACTGCGCGCCGAGTTC GAACGCGAAGCCCACACCCAGGAATTCAAGGCCCTCAACGCTGAGTTTCT CGCGGAAGACCGGCGCTTGAAGGAGCTCGCACGCATGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20799:805..1044+

>mRNA_P-wetherbeei_contig20799.3.1 ID=mRNA_P-wetherbeei_contig20799.3.1|Name=mRNA_P-wetherbeei_contig20799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig20799:805..1044+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGACGTCGGCTTCTGGGAGCTCGCGCTGATCTTCGTGGTTGCGCT
GGTGGTGGTCGGCCCCGAGCGCATGCCGGGCTTGATCCGCACCACCGGGC
AATGGTTGGGACGCATGCAGCGCGTCGCGCGCGAACTGCGCGCCGAGTTC
GAACGCGAAGCCCACACCCAGGAATTCAAGGCCCTCAACGCTGAGTTTCT
CGCGGAAGACCGGCGCTTGAAGGAGCTCGCACGCATGCCT
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