mRNA_P-wetherbeei_contig20799.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20799.2.1
Unique NamemRNA_P-wetherbeei_contig20799.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A2E2BCN4_9GAMM (Sec-independent protein translocase protein TatA n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2BCN4_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 1.060e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQVIEGEARTERE 207
            MGF I+ LVVLL+IV L+FGTKKIK VG+DVGGWIRDFKKAM+E+  +    K +A Q IE E  +E+E
Sbjct:    1 MGFGIKELVVLLVIVALVFGTKKIKGVGSDVGGWIRDFKKAMKEEPTETDPLKGEA-QTIEAEVTSEKE 68          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A3D5DCD1_9GAMM (Sec-independent protein translocase protein TatA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCD1_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMRE--DTPDETVAKNDAKQVIEGEA 192
            M F I+ L+V+L+IV+L+FGTKKI+NVG DVGGWIRDFK+A+++  D PD+   K D  +VIEG++
Sbjct:    1 MSFGIKELIVILVIVMLVFGTKKIRNVGTDVGGWIRDFKRALKDGQDAPDDAAKKTDPGRVIEGDS 66          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A523P079_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P079_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 1.480e-13
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPD----ETVAKNDAKQVIEGE-ARTEREH 210
            M F I+ L+V+L+IV+L+FGTKKI++VG DVG WIRDFKKA+++   D    + V +  + +VIEGE A  E+E+
Sbjct:    1 MSFGIKELIVILVIVMLVFGTKKIRSVGTDVGSWIRDFKKALKDGEDDADADDVVVETKSSRVIEGETAPVEKEN 75          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A1J4ZFM8_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Gallionellaceae bacterium CG1_02_60_948 TaxID=1805163 RepID=A0A1J4ZFM8_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 7.730e-13
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 GFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAK-NDAKQVIEGEARTEREH 210
             FSI H +++L++VIL+FGTKK++N+G+D+GG ++ FK  MR D  DE+  K  D  QVIEGEA+ + +H
Sbjct:    3 SFSIWHWLIVLLVVILIFGTKKLRNIGSDLGGAVKGFKDGMRSD--DESAKKVRDGDQVIEGEAKDKTQH 70          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A257N4V2_9GAMM (Sec-independent protein translocase protein TatA n=3 Tax=unclassified Methylococcaceae TaxID=51352 RepID=A0A257N4V2_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 4.350e-12
Identity = 33/68 (48.53%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQVIEGEARTER 204
            MG  I+ L+V+L+IVI+LFGTKK++NVGAD+GG I+ F+ A++E   D+T A+N+  + I+GE  +++
Sbjct:    1 MGIGIKELLVILVIVIVLFGTKKLRNVGADLGGAIKSFRSAVKEGEEDKTHAENEG-ETIDGEVTSKK 67          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: UPI001C0E3FBA (Sec-independent protein translocase subunit TatA n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI001C0E3FBA)

HSP 1 Score: 64.3 bits (155), Expect = 4.350e-12
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    4 GFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQV 177
            G SI H+++  I+VILLFGT K+KN+G DVGG ++DFKK+MRED   +T A N++K +
Sbjct:    3 GLSIWHVIIFAIVVILLFGTSKLKNIGKDVGGAVKDFKKSMRED---DTAALNNSKTI 57          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: F0KM53_ACICP (Sec-independent protein translocase protein TatA n=23 Tax=Acinetobacter TaxID=469 RepID=F0KM53_ACICP)

HSP 1 Score: 64.3 bits (155), Expect = 4.460e-12
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 GFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQVIEGEART 198
            G SI H+V+  I+VILLFGT K+KN+G DVGG ++DFKK++RED  DET A N  +  I+ + +T
Sbjct:    3 GLSIWHVVIFAIVVILLFGTSKLKNIGKDVGGAVKDFKKSVRED--DETTALNTPR-TIDAQVKT 64          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A177MBC4_METMH (Sec-independent protein translocase protein TatA n=6 Tax=Methylomonas TaxID=416 RepID=A0A177MBC4_METMH)

HSP 1 Score: 63.9 bits (154), Expect = 6.170e-12
Identity = 32/63 (50.79%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQVIEGE 189
            MG SI HL+V+L+IVIL+FGTK++KN+G+D+G  IR F+ A++E + D+T+A+ + ++ +EGE
Sbjct:    1 MGLSIPHLLVVLVIVILVFGTKRLKNIGSDLGEAIRGFRSAVKEGSEDKTIARKE-EEPLEGE 62          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A1F4CVU7_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CVU7_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 6.820e-12
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 GFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMRE--DTPDETVAKNDAKQVIEGEARTEREH 210
             FSI H +++L+IV+L+FGTKK++N+GAD+GG +R FK  MRE  + P E  A  +  + +EGE + + EH
Sbjct:    3 SFSIWHWLIVLVIVMLIFGTKKLRNMGADLGGAVRGFKDGMREGAEKPAEGAAPQETGKTVEGEVKGKTEH 73          
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Match: A0A4R3XXU4_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3XXU4_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 8.760e-12
Identity = 29/64 (45.31%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 GFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDETVAKNDAKQVIEGEAR 195
             FSI H +++L+IV+++FGTKK++N+G DVGG ++ FK AMRE+     +  ++A Q I+GE +
Sbjct:    3 SFSIWHWLIVLVIVLVIFGTKKLRNMGGDVGGAVKSFKDAMREEEKSSKIGTSEAGQTIDGEVK 66          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20799.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2BCN4_9GAMM1.060e-1762.32Sec-independent protein translocase protein TatA n... [more]
A0A3D5DCD1_9GAMM2.200e-1757.58Sec-independent protein translocase protein TatA n... [more]
A0A523P079_9PROT1.480e-1350.67Sec-independent protein translocase protein TatA n... [more]
A0A1J4ZFM8_9PROT7.730e-1350.00Sec-independent protein translocase protein TatA n... [more]
A0A257N4V2_9GAMM4.350e-1248.53Sec-independent protein translocase protein TatA n... [more]
UPI001C0E3FBA4.350e-1255.17Sec-independent protein translocase subunit TatA n... [more]
F0KM53_ACICP4.460e-1253.85Sec-independent protein translocase protein TatA n... [more]
A0A177MBC4_METMH6.170e-1250.79Sec-independent protein translocase protein TatA n... [more]
A0A1F4CVU7_9PROT6.820e-1246.48Sec-independent protein translocase protein TatA n... [more]
A0A4R3XXU4_9PROT8.760e-1245.31Sec-independent protein translocase protein TatA n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20799contigP-wetherbeei_contig20799:580..795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog871585.BDGL_003379
Preferred nametatA
PFAMsMttA_Hcf106
Model size216
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03116,ko:K03425
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categorysignal anchor
GOsGO:0002790,GO:0003674,GO:0005215,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705
Exons1
Evalue7.31e-13
EggNOG OGsCOG1826@1|root,COG1826@2|Bacteria,1N6S4@1224|Proteobacteria,1SCC7@1236|Gammaproteobacteria,3NPBJ@468|Moraxellaceae
DescriptionPart of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system
Cds size216
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.8272417-CDS-P-wetherbeei_contig20799:579..7951683186208.8272417-CDS-P-wetherbeei_contig20799:579..795Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20799 580..795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20799.2.1prot_P-wetherbeei_contig20799.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20799 580..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20799.2.1

>prot_P-wetherbeei_contig20799.2.1 ID=prot_P-wetherbeei_contig20799.2.1|Name=mRNA_P-wetherbeei_contig20799.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MGFSIQHLVVLLIIVILLFGTKKIKNVGADVGGWIRDFKKAMREDTPDET
VAKNDAKQVIEGEARTEREHV*
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mRNA from alignment at P-wetherbeei_contig20799:580..795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20799.2.1 ID=mRNA_P-wetherbeei_contig20799.2.1|Name=mRNA_P-wetherbeei_contig20799.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig20799:580..795+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTTTTCAATTCAACATCTGGTCGTCTTGCTGATCATCGTGATCCT GTTGTTCGGCACCAAGAAGATCAAAAACGTTGGCGCCGATGTCGGCGGCT GGATCCGTGATTTCAAGAAGGCCATGCGCGAAGACACACCGGACGAGACG GTAGCCAAGAACGACGCCAAGCAGGTCATCGAAGGCGAAGCCCGCACTGA ACGCGAACACGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20799:580..795+

>mRNA_P-wetherbeei_contig20799.2.1 ID=mRNA_P-wetherbeei_contig20799.2.1|Name=mRNA_P-wetherbeei_contig20799.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig20799:580..795+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTTTTCAATTCAACATCTGGTCGTCTTGCTGATCATCGTGATCCT
GTTGTTCGGCACCAAGAAGATCAAAAACGTTGGCGCCGATGTCGGCGGCT
GGATCCGTGATTTCAAGAAGGCCATGCGCGAAGACACACCGGACGAGACG
GTAGCCAAGAACGACGCCAAGCAGGTCATCGAAGGCGAAGCCCGCACTGA
ACGCGAACACGTCTGA
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