mRNA_P-wetherbeei_contig20797.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20797.1.1
Unique NamemRNA_P-wetherbeei_contig20797.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20797.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20797contigP-wetherbeei_contig20797:440..1198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons1
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.7371395-CDS-P-wetherbeei_contig20797:439..11921683186208.7371395-CDS-P-wetherbeei_contig20797:439..1192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20797 440..1192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.7527595-UTR-P-wetherbeei_contig20797:1192..11981683186208.7527595-UTR-P-wetherbeei_contig20797:1192..1198Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20797 1193..1198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20797.1.1prot_P-wetherbeei_contig20797.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20797 440..1192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20797.1.1

>prot_P-wetherbeei_contig20797.1.1 ID=prot_P-wetherbeei_contig20797.1.1|Name=mRNA_P-wetherbeei_contig20797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MVWGEAGNDTVDGGSGNDQLWGGDGNDVMKGGEGNDRLEGEAGNDTLSGG
KGNDLLLGGDGNDVIDAGSGNDDIAGGLGNDVIKAGSGNDYVWVEGGNDT
VSGGEGFDTIDFGGMKGPLTIDLSKGTATVDGFKMEVKTFEQVFGTAGDD
VIRGAKTSDSLYGGNGNDWIRSGLGSDKVVGGAGADTFEFTKTDAADGTY
DLVSDFEVGVDHLDLSNFGRGKVQAVDTEAGTMVQGMINGAYQDIALLMN
V
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mRNA from alignment at P-wetherbeei_contig20797:440..1198-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20797.1.1 ID=mRNA_P-wetherbeei_contig20797.1.1|Name=mRNA_P-wetherbeei_contig20797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig20797:440..1198- (Phaeothamnion wetherbeei SAG_119_79)
GACGACATGGTCTGGGGCGAGGCCGGCAACGACACCGTCGATGGCGGCTC
GGGCAACGACCAGCTCTGGGGTGGCGACGGCAACGACGTCATGAAGGGCG
GCGAAGGCAACGATCGTCTCGAAGGCGAAGCGGGCAACGACACGCTCTCC
GGCGGCAAGGGCAATGACCTTCTGCTCGGCGGCGACGGCAACGATGTGAT
CGACGCGGGTTCGGGCAACGACGACATCGCCGGTGGCCTGGGCAACGACG
TCATCAAGGCCGGCTCGGGCAACGACTATGTCTGGGTCGAAGGCGGCAAC
GACACGGTCTCGGGCGGCGAAGGCTTCGACACCATCGACTTCGGCGGCAT
GAAGGGGCCGCTGACGATCGACCTCAGCAAGGGCACCGCGACCGTCGACG
GCTTCAAGATGGAAGTGAAGACGTTCGAGCAGGTCTTCGGCACGGCCGGT
GACGACGTGATCCGCGGCGCCAAGACGAGCGACAGCCTCTACGGCGGCAA
CGGCAACGATTGGATCCGCTCGGGTCTGGGCAGCGACAAGGTTGTCGGCG
GAGCGGGAGCAGATACGTTCGAGTTCACCAAGACCGATGCGGCCGACGGC
ACCTATGACCTCGTTTCCGACTTCGAAGTGGGCGTCGATCACCTCGATCT
GTCGAATTTCGGACGCGGCAAGGTGCAAGCCGTCGATACGGAAGCCGGTA
CGATGGTGCAGGGGATGATCAACGGCGCCTACCAGGACATCGCCTTGCTC
ATGAACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20797:440..1198-

>mRNA_P-wetherbeei_contig20797.1.1 ID=mRNA_P-wetherbeei_contig20797.1.1|Name=mRNA_P-wetherbeei_contig20797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig20797:440..1198- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGGGGCGAGGCCGGCAACGACACCGTCGATGGCGGCTCGGGCAA
CGACCAGCTCTGGGGTGGCGACGGCAACGACGTCATGAAGGGCGGCGAAG
GCAACGATCGTCTCGAAGGCGAAGCGGGCAACGACACGCTCTCCGGCGGC
AAGGGCAATGACCTTCTGCTCGGCGGCGACGGCAACGATGTGATCGACGC
GGGTTCGGGCAACGACGACATCGCCGGTGGCCTGGGCAACGACGTCATCA
AGGCCGGCTCGGGCAACGACTATGTCTGGGTCGAAGGCGGCAACGACACG
GTCTCGGGCGGCGAAGGCTTCGACACCATCGACTTCGGCGGCATGAAGGG
GCCGCTGACGATCGACCTCAGCAAGGGCACCGCGACCGTCGACGGCTTCA
AGATGGAAGTGAAGACGTTCGAGCAGGTCTTCGGCACGGCCGGTGACGAC
GTGATCCGCGGCGCCAAGACGAGCGACAGCCTCTACGGCGGCAACGGCAA
CGATTGGATCCGCTCGGGTCTGGGCAGCGACAAGGTTGTCGGCGGAGCGG
GAGCAGATACGTTCGAGTTCACCAAGACCGATGCGGCCGACGGCACCTAT
GACCTCGTTTCCGACTTCGAAGTGGGCGTCGATCACCTCGATCTGTCGAA
TTTCGGACGCGGCAAGGTGCAAGCCGTCGATACGGAAGCCGGTACGATGG
TGCAGGGGATGATCAACGGCGCCTACCAGGACATCGCCTTGCTCATGAAC
GTC
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