mRNA_P-wetherbeei_contig20796.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20796.1.1
Unique NamemRNA_P-wetherbeei_contig20796.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20796.1.1 vs. uniprot
Match: UPI001E2F5250 (porin family protein n=1 Tax=Rhizobium sp. C4 TaxID=1349800 RepID=UPI001E2F5250)

HSP 1 Score: 60.5 bits (145), Expect = 1.750e-8
Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:   31 NVPPNQRSESEIMTADIGLMLPLAEGLTMRTGLTLNHTVSQTVLPGGVPALDNNWLAGSVGLTYKINKSFEVNAGYSGWLNSNKNEYSRASVGLGYRF 324
            N P      S +    +G+     + L + + +  NH + QTV  G  P L  NW    VG+ Y I  ++EVNA    W+ ++   Y+RASVG+ Y+F
Sbjct:  213 NTPARAAWGSTLALVQLGVSYQATDQLRLSSAVVFNHFIVQTVA-GNEPKLSPNWFTLQVGVNYDITPNWEVNAKALTWVGNSSMNYTRASVGVAYKF 309
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E2F52501.750e-832.65porin family protein n=1 Tax=Rhizobium sp. C4 TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20796contigP-wetherbeei_contig20796:717..1043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.699054-CDS-P-wetherbeei_contig20796:716..10431683186208.699054-CDS-P-wetherbeei_contig20796:716..1043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20796 717..1043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20796.1.1prot_P-wetherbeei_contig20796.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20796 717..1043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20796.1.1

>prot_P-wetherbeei_contig20796.1.1 ID=prot_P-wetherbeei_contig20796.1.1|Name=mRNA_P-wetherbeei_contig20796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
KSNQDFSFANNVPPNQRSESEIMTADIGLMLPLAEGLTMRTGLTLNHTVS
QTVLPGGVPALDNNWLAGSVGLTYKINKSFEVNAGYSGWLNSNKNEYSRA
SVGLGYRF*
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mRNA from alignment at P-wetherbeei_contig20796:717..1043-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20796.1.1 ID=mRNA_P-wetherbeei_contig20796.1.1|Name=mRNA_P-wetherbeei_contig20796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20796:717..1043- (Phaeothamnion wetherbeei SAG_119_79)
AAGAGCAACCAGGATTTTTCGTTCGCCAACAACGTGCCCCCCAACCAGCG
CTCGGAATCCGAGATCATGACGGCGGATATAGGCCTGATGCTGCCGCTGG
CAGAGGGCCTGACCATGCGTACCGGCCTTACGCTGAACCACACCGTAAGC
CAGACCGTGCTGCCCGGCGGTGTCCCGGCCCTGGACAACAACTGGCTGGC
CGGCTCCGTCGGCCTCACCTACAAGATCAACAAGTCATTCGAGGTGAATG
CCGGTTACTCCGGATGGCTGAACAGCAACAAGAACGAGTACTCCCGGGCG
AGCGTTGGCCTGGGATACCGGTTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20796:717..1043-

>mRNA_P-wetherbeei_contig20796.1.1 ID=mRNA_P-wetherbeei_contig20796.1.1|Name=mRNA_P-wetherbeei_contig20796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20796:717..1043- (Phaeothamnion wetherbeei SAG_119_79)
AAGAGCAACCAGGATTTTTCGTTCGCCAACAACGTGCCCCCCAACCAGCG
CTCGGAATCCGAGATCATGACGGCGGATATAGGCCTGATGCTGCCGCTGG
CAGAGGGCCTGACCATGCGTACCGGCCTTACGCTGAACCACACCGTAAGC
CAGACCGTGCTGCCCGGCGGTGTCCCGGCCCTGGACAACAACTGGCTGGC
CGGCTCCGTCGGCCTCACCTACAAGATCAACAAGTCATTCGAGGTGAATG
CCGGTTACTCCGGATGGCTGAACAGCAACAAGAACGAGTACTCCCGGGCG
AGCGTTGGCCTGGGATACCGGTTCTAG
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