mRNA_P-wetherbeei_contig20794.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20794.1.1
Unique NamemRNA_P-wetherbeei_contig20794.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20794contigP-wetherbeei_contig20794:646..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size559
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.6091144-UTR-P-wetherbeei_contig20794:645..6721683186208.6091144-UTR-P-wetherbeei_contig20794:645..672Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20794 646..672 -
1683186208.6295934-UTR-P-wetherbeei_contig20794:1197..12041683186208.6295934-UTR-P-wetherbeei_contig20794:1197..1204Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20794 1198..1204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.6196227-CDS-P-wetherbeei_contig20794:672..11971683186208.6196227-CDS-P-wetherbeei_contig20794:672..1197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20794 673..1197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20794.1.1prot_P-wetherbeei_contig20794.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20794 673..1197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20794.1.1

>prot_P-wetherbeei_contig20794.1.1 ID=prot_P-wetherbeei_contig20794.1.1|Name=mRNA_P-wetherbeei_contig20794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MAATGIVVAAAGTAELMLAPPPPGAAAASVSAAEAATTGGALDSALAGAT
GDIDTAMSLTAARGKRAEGPAAGQEATAITGATMAQPAAARSGGGGGVFG
NGGGGGGGGGGGGGGGGGDGNGNGVGALAFGAVRGEESYVDAVAAAINEA
LLWQRLHAALVSCCSAPAGAPARA*
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mRNA from alignment at P-wetherbeei_contig20794:646..1204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20794.1.1 ID=mRNA_P-wetherbeei_contig20794.1.1|Name=mRNA_P-wetherbeei_contig20794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=559bp|location=Sequence derived from alignment at P-wetherbeei_contig20794:646..1204- (Phaeothamnion wetherbeei SAG_119_79)
GGCCACGATGGCGGCGACGGGCATAGTTGTGGCTGCGGCCGGAACGGCCG
AGCTAATGCTGGCCCCGCCACCGCCCGGTGCGGCGGCGGCGTCGGTGTCG
GCGGCGGAGGCCGCGACGACTGGGGGTGCTTTGGACAGTGCTTTAGCCGG
GGCGACGGGCGACATCGACACAGCAATGTCCCTGACGGCGGCCCGAGGAA
AACGAGCCGAGGGACCGGCAGCGGGACAGGAAGCCACAGCAATCACGGGC
GCAACGATGGCGCAGCCGGCAGCCGCTCGCAGCGGCGGTGGTGGCGGTGT
CTTCGGAAATGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGCG
GCGGTGGCGGCGACGGGAACGGAAACGGGGTTGGCGCTCTCGCATTTGGA
GCGGTAAGAGGAGAAGAGAGCTATGTGGACGCCGTCGCCGCAGCCATCAA
CGAGGCCCTCCTCTGGCAGCGGCTGCACGCCGCGCTCGTCTCGTGCTGTA
GCGCCCCCGCTGGGGCCCCAGCGAGGGCTTGACAACGTAATAAGATTCTT
TCTCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20794:646..1204-

>mRNA_P-wetherbeei_contig20794.1.1 ID=mRNA_P-wetherbeei_contig20794.1.1|Name=mRNA_P-wetherbeei_contig20794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig20794:646..1204- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGACGGGCATAGTTGTGGCTGCGGCCGGAACGGCCGAGCTAAT
GCTGGCCCCGCCACCGCCCGGTGCGGCGGCGGCGTCGGTGTCGGCGGCGG
AGGCCGCGACGACTGGGGGTGCTTTGGACAGTGCTTTAGCCGGGGCGACG
GGCGACATCGACACAGCAATGTCCCTGACGGCGGCCCGAGGAAAACGAGC
CGAGGGACCGGCAGCGGGACAGGAAGCCACAGCAATCACGGGCGCAACGA
TGGCGCAGCCGGCAGCCGCTCGCAGCGGCGGTGGTGGCGGTGTCTTCGGA
AATGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGGCGGTGG
CGGCGACGGGAACGGAAACGGGGTTGGCGCTCTCGCATTTGGAGCGGTAA
GAGGAGAAGAGAGCTATGTGGACGCCGTCGCCGCAGCCATCAACGAGGCC
CTCCTCTGGCAGCGGCTGCACGCCGCGCTCGTCTCGTGCTGTAGCGCCCC
CGCTGGGGCCCCAGCGAGGGCTTGA
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