mRNA_P-wetherbeei_contig20780.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20780.3.1
Unique NamemRNA_P-wetherbeei_contig20780.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A7I8EET8_9CHLR (Hydrolase n=1 Tax=Ktedonobacteria bacterium brp13 TaxID=2717365 RepID=A0A7I8EET8_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 6.040e-7
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGGQ----AMDSYAQRVWKEDL-GPTGLFNRGDHLGGYDSGHGFQMIDQAGLTQVYALQNWPKDK 225
            FN+I+F+NLL +  V+  Q    AM +YA +VW+      TGLF    H  G  S    QMI+QA +TQ+YA+ +W  ++
Sbjct:  309 FNSIFFKNLLLLQSVDHNQRYVRAMQNYADQVWQTSRDSATGLF----HFNGSSS---TQMIEQAAMTQIYAVLSWSPEQ 381          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: D6U5Z8_9CHLR (Glycoside hydrolase family 76 n=4 Tax=Ktedonobacter TaxID=363276 RepID=D6U5Z8_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 8.260e-7
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGGQ----AMDSYAQRVWKEDL-GPTGLFNRGDHLGGYDSGHGFQMIDQAGLTQVYALQNW 213
            FN+I+F+NLL +  V   Q    AM +YA R W+ +    TGLF    H  G  S    QMI+QA +TQ+YA+ +W
Sbjct:  308 FNSIFFKNLLLLQSVNHNQDYVKAMQAYADRAWENNRDAATGLF----HFNGSQS---TQMIEQAAMTQIYAVLSW 376          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A420XTM5_9ACTN (Glycosyl hydrolase family 76 n=1 Tax=Motilibacter peucedani TaxID=598650 RepID=A0A420XTM5_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 8.290e-7
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGG----QAMDSYAQRVWKEDLGP-TGLFNRGDHLGGYDSGHGFQMIDQAGLTQVYALQNWPK 219
            FN+I+F+NLL +  V+      +A+ +YA R+W +   P TGLF  GD  G        QMI+QA +TQV+A+  W +
Sbjct:  319 FNSIFFKNLLLLSSVKSDSAVREALVAYADRLWTQHRDPATGLFRFGDAAG-------TQMIEQAAVTQVFAVLAWSR 389          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A401ZT25_9CHLR (Hydrolase n=1 Tax=Dictyobacter aurantiacus TaxID=1936993 RepID=A0A401ZT25_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 1.550e-6
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGG----QAMDSYAQRVWKEDL-GPTGLFNRGDHLGGYDSGHGFQMIDQAGLTQVYALQNW 213
            FN+I+F+NLL +  V+      +AM SYA +VW+      TGLF    H G   S    QMI+QA +TQ+YA+ +W
Sbjct:  309 FNSIFFKNLLLLQSVDHDTRYVKAMQSYADQVWQTSRDATTGLF----HFGNSSS---TQMIEQAAMTQIYAVLSW 377          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A4P6JLB6_9CHLR (Glycosyl hydrolase n=2 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JLB6_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 3.990e-6
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGGQ----AMDSYAQRVW-KEDLGPTGLFNRGDHLGGYDSGHGF-QMIDQAGLTQVYALQNWPKDK 225
            FNAI+F+NLL +  V   Q    AM +YA  VW K     TGLF        +DS     QMIDQA +TQ+YA+  WP  +
Sbjct:  352 FNAIFFKNLLLLHSVNHNQSYVQAMQTYADTVWSKYRDAATGLFR-------FDSTKPTTQMIDQAAMTQIYAVLCWPPSR 425          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: UPI001BA79E6C (glycosyl hydrolase n=1 Tax=Agromyces salentinus TaxID=269421 RepID=UPI001BA79E6C)

HSP 1 Score: 52.4 bits (124), Expect = 5.430e-6
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGGQ----AMDSYAQRVWKEDLG-PTGLFN-RGDHLGGYDSGHGFQMIDQAGLTQVYALQNW 213
            FN+I+F+NLL +    GG     AM  YA RVW E     TGLF   G+H          Q+++QA +TQ+YA+  W
Sbjct:  328 FNSIFFKNLLLLESETGGSTYRTAMQDYADRVWAEQRDRSTGLFVFEGEHT---------QLLEQAAMTQIYAVLAW 395          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A1H2N1F5_9ACTN (Predicted alpha-1,6-mannanase, GH76 family n=1 Tax=Microlunatus sagamiharensis TaxID=546874 RepID=A0A1H2N1F5_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 7.430e-6
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGG----QAMDSYAQRVWKEDLGP-TGLFNRGDHLGGYDSGHGF-QMIDQAGLTQVYALQNWPKDK 225
            FN+IYF+NLL +    G     +AM+++A  VW+      TGLF     L   ++  G  QMI QA +TQVYA+  WP+ +
Sbjct:  330 FNSIYFKNLLLLDAARGRSTYRKAMEAWADHVWRHQRDDATGLF-----LFDQETAPGTTQMIQQAAMTQVYAVLAWPRSR 405          
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Match: A0A1H5XVG2_9ACTN (Glycosyl hydrolase family 76 n=1 Tax=Streptomyces yanglinensis TaxID=310779 RepID=A0A1H5XVG2_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 3.550e-5
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:    1 FNAIYFRNLLQVPGVEGG----QAMDSYAQRVWKEDLGP-TGLFNRGDHLGGYDSGHGFQMIDQAGLTQVYALQNWPKDK 225
            FN+I+F+NLL +  V GG    +A  +YA  VW     P TGL         +D+G   Q I QA   Q++A+  WP+ K
Sbjct:  328 FNSIFFKNLLLLESVTGGDTYQKATAAYADWVWTSARDPKTGLVR-------FDTGGTTQSIQQAASAQIFAVLAWPRSK 400          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20780.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7I8EET8_9CHLR6.040e-740.00Hydrolase n=1 Tax=Ktedonobacteria bacterium brp13 ... [more]
D6U5Z8_9CHLR8.260e-742.11Glycoside hydrolase family 76 n=4 Tax=Ktedonobacte... [more]
A0A420XTM5_9ACTN8.290e-739.74Glycosyl hydrolase family 76 n=1 Tax=Motilibacter ... [more]
A0A401ZT25_9CHLR1.550e-642.11Hydrolase n=1 Tax=Dictyobacter aurantiacus TaxID=1... [more]
A0A4P6JLB6_9CHLR3.990e-643.21Glycosyl hydrolase n=2 Tax=Ktedonosporobacter rubr... [more]
UPI001BA79E6C5.430e-640.26glycosyl hydrolase n=1 Tax=Agromyces salentinus Ta... [more]
A0A1H2N1F5_9ACTN7.430e-639.51Predicted alpha-1,6-mannanase, GH76 family n=1 Tax... [more]
A0A1H5XVG2_9ACTN3.550e-537.50Glycosyl hydrolase family 76 n=1 Tax=Streptomyces ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20780contigP-wetherbeei_contig20780:958..1200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog926564.KI911641_gene2278
PFAMsGlyco_hydro_76
Model size243
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.82e-08
EggNOG OGsCOG4833@1|root,COG4833@2|Bacteria,2I4KC@201174|Actinobacteria
DescriptionGlycosyl hydrolase family 76
Cds size243
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.432718-CDS-P-wetherbeei_contig20780:957..12001683186208.432718-CDS-P-wetherbeei_contig20780:957..1200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20780 958..1200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20780.3.1prot_P-wetherbeei_contig20780.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20780 958..1200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20780.3.1

>prot_P-wetherbeei_contig20780.3.1 ID=prot_P-wetherbeei_contig20780.3.1|Name=mRNA_P-wetherbeei_contig20780.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
FNAIYFRNLLQVPGVEGGQAMDSYAQRVWKEDLGPTGLFNRGDHLGGYDS
GHGFQMIDQAGLTQVYALQNWPKDKLDKIS*
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mRNA from alignment at P-wetherbeei_contig20780:958..1200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20780.3.1 ID=mRNA_P-wetherbeei_contig20780.3.1|Name=mRNA_P-wetherbeei_contig20780.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig20780:958..1200- (Phaeothamnion wetherbeei SAG_119_79)
TTTAACGCTATCTATTTCCGCAATCTACTGCAGGTTCCCGGGGTCGAGGG CGGCCAGGCCATGGACAGCTACGCGCAGCGGGTCTGGAAAGAGGATCTCG GGCCCACCGGGCTCTTCAATCGAGGCGATCATCTGGGCGGCTATGACAGC GGACACGGCTTCCAGATGATTGATCAGGCCGGGCTGACGCAAGTCTACGC CTTACAGAACTGGCCCAAGGACAAGCTGGATAAAATCAGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20780:958..1200-

>mRNA_P-wetherbeei_contig20780.3.1 ID=mRNA_P-wetherbeei_contig20780.3.1|Name=mRNA_P-wetherbeei_contig20780.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig20780:958..1200- (Phaeothamnion wetherbeei SAG_119_79)
TTTAACGCTATCTATTTCCGCAATCTACTGCAGGTTCCCGGGGTCGAGGG
CGGCCAGGCCATGGACAGCTACGCGCAGCGGGTCTGGAAAGAGGATCTCG
GGCCCACCGGGCTCTTCAATCGAGGCGATCATCTGGGCGGCTATGACAGC
GGACACGGCTTCCAGATGATTGATCAGGCCGGGCTGACGCAAGTCTACGC
CTTACAGAACTGGCCCAAGGACAAGCTGGATAAAATCAGCTAG
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