mRNA_P-wetherbeei_contig2077.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2077.1.1
Unique NamemRNA_P-wetherbeei_contig2077.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.220e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:  584 LGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            LGKRV +VR+VVREVAGLMPYEKRILDMIKVGG SAEKRMYK+AKKR+
Sbjct:   29 LGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRL 76
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 9.660e-16
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:  584 LGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            LGKRVK+VREVVREVAGLMPYEKRILDMIK GG SAEKR+YK+AK+R+
Sbjct:   36 LGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRL 83
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: M4BXW6_HYAAE (60S ribosomal protein L36 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BXW6_HYAAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.040e-13
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:  551 RGATRLGKQQLLGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            R A+R G+    GK+ KLVRE+VREV GLMPYEKRILDMIK GG SAEKR+YK++KKR+
Sbjct:   24 RPASRKGRA---GKKTKLVREIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRL 79
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: H3G707_PHYRM (60S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4762 RepID=H3G707_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 2.120e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:  551 RGATRLGKQQLLGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            R A+R G+    GK+ KLVR++VREV GLMPYEKRILDMIK GG SAEKR+YK++KKR+
Sbjct:   21 RPASRKGRA---GKKTKLVRDIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRL 76
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: A0A5D6XYW5_9STRA (60S ribosomal protein L36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.270e-13
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:  551 RGATRLGKQQLLGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            R A+R G+    GK++KLVR VVREV GLMPYEKRILDMIK GG SAEKR+YK++KKR+
Sbjct:   57 RPASRKGRA---GKKIKLVRSVVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRL 112
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: F0WSK9_9STRA (60S ribosomal protein L36 n=2 Tax=Albugo TaxID=65356 RepID=F0WSK9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.600e-13
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  587 GKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            GK+ KLVR++VREV GLMPYEKRILDMIK GG SAEKR+YK++KKR+
Sbjct:   33 GKKTKLVRQIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRL 79
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: A0A0P1B1R0_PLAHL (60S ribosomal protein L36 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1R0_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 9.910e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:  551 RGATRLGKQQLLGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            R A+R G+    GK+ KLVR++VREV GLMPYEKRILDMIK GG SAEKR+YK++KKR+
Sbjct:   76 RPASRKGRA---GKKTKLVRDIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRL 131
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:  584 LGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            L  R K+VREVVREVAGL+PYEKRILDMIK GG S+EKRMYK+AK R+
Sbjct:   22 LSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRL 69
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: K8YZ07_NANGC (60S ribosomal protein L36 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ07_NANGC)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-12
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  569 GKQQLLGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            G++  L K+VKLVREVVR+V GLMPYEKRILD+IK GG  AEK++YK+AK+R+
Sbjct:   27 GRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRL 79
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BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Match: A0A7S2ICR1_9STRA (60S ribosomal protein L36 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ICR1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.390e-12
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:  584 LGKRVKLVREVVREVAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRV 727
            LGKRV L RE+ REVAGL PYE+RILDMIK GG +A+KR+YK+AKKR+
Sbjct:   32 LGKRVSLCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKKRL 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2077.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YST3_9STRA4.220e-1687.5060S ribosomal protein L36 n=1 Tax=Tribonema minus ... [more]
B7ZGM7_9PHAE9.660e-1685.4260S ribosomal protein L36 (Fragment) n=3 Tax=Phaeo... [more]
M4BXW6_HYAAE1.040e-1369.4960S ribosomal protein L36 n=21 Tax=Peronosporaceae... [more]
H3G707_PHYRM2.120e-1367.8060S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4... [more]
A0A5D6XYW5_9STRA3.270e-1369.4960S ribosomal protein L36 n=1 Tax=Pythium brassicu... [more]
F0WSK9_9STRA3.600e-1376.6060S ribosomal protein L36 n=2 Tax=Albugo TaxID=653... [more]
A0A0P1B1R0_PLAHL9.910e-1367.8060S ribosomal protein L36 n=1 Tax=Plasmopara halst... [more]
F0YH51_AURAN1.000e-1277.0860S ribosomal protein L36 n=1 Tax=Aureococcus anop... [more]
K8YZ07_NANGC1.270e-1267.9260S ribosomal protein L36 n=3 Tax=Monodopsidaceae ... [more]
A0A7S2ICR1_9STRA2.390e-1272.9260S ribosomal protein L36 n=1 Tax=Helicotheca tame... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2077contigP-wetherbeei_contig2077:241..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQH6
Preferred nameRPL36
PFAMsRibosomal_L36e
Model size1238
Max annot lvl2759|Eukaryota
KEGG koko:K02920,ko:K03115,ko:K14566,ko:K17973
KEGG Pathwayko03008,ko03010,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map03010,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG ModuleM00177
Hectar predicted targeting categorymitochondrion
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons1
Evalue2.16e-17
EggNOG OGsCOG5051@1|root,KOG3452@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L36e
Ec32 orthologEc-22_003050.1
Descriptioncytoplasmic translation
Cds size558
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.0649824-UTR-P-wetherbeei_contig2077:240..4151683186208.0649824-UTR-P-wetherbeei_contig2077:240..415Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2077 241..415 +
1683186208.0866294-UTR-P-wetherbeei_contig2077:973..14781683186208.0866294-UTR-P-wetherbeei_contig2077:973..1478Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2077 974..1478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.0778918-CDS-P-wetherbeei_contig2077:415..9731683186208.0778918-CDS-P-wetherbeei_contig2077:415..973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2077 416..973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2077.1.1prot_P-wetherbeei_contig2077.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2077 416..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2077.1.1

>prot_P-wetherbeei_contig2077.1.1 ID=prot_P-wetherbeei_contig2077.1.1|Name=mRNA_P-wetherbeei_contig2077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MFFARRSIFLFVSGNKLLRALVSRPRRCCLVIKRDCAHFHLSIWHRTSVD
CAGGTCIGVPIVSTFLMTHFPVHLADNKNHAGFLGYPTAPATLPSITDTA
KPLGGGVDRSADQQWNRRLIGSALRRGATRLGKQQLLGKRVKLVREVVRE
VAGLMPYEKRILDMIKVGGGSAEKRMYKYAKKRVS*
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mRNA from alignment at P-wetherbeei_contig2077:241..1478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2077.1.1 ID=mRNA_P-wetherbeei_contig2077.1.1|Name=mRNA_P-wetherbeei_contig2077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1238bp|location=Sequence derived from alignment at P-wetherbeei_contig2077:241..1478+ (Phaeothamnion wetherbeei SAG_119_79)
GACAGAGGAAGGAATCGCCGTAGGGCTTCACAAGGGCCACGTGGTGCAGA
AGAGGGAGCGGAAACCCCGCCCAGCGCACCGCAAAGGGGTGAGTTCGACA
AATGGCTGCAACGAGACGTTGGAACGGGCCCCAGGGCGCAGAGGAAAATT
GTAGTCCTGTGTCTTCGGCATCTATATGTTCTTCGCGCGCCGCTCTATTT
TCTTGTTCGTTTCCGGAAACAAGCTACTTCGCGCGCTAGTATCTCGCCCT
CGAAGATGCTGCCTCGTTATCAAAAGAGACTGCGCTCACTTCCATCTTAG
CATTTGGCATCGAACTAGCGTTGACTGCGCAGGCGGAACGTGCATCGGAG
TACCAATTGTATCTACCTTTCTCATGACTCACTTTCCCGTCCATCTTGCC
GACAACAAAAACCACGCTGGCTTCTTGGGCTACCCTACCGCACCTGCGAC
ACTTCCTTCGATTACCGACACCGCAAAACCTCTGGGCGGTGGCGTCGATC
GTTCCGCTGATCAACAATGGAACCGGCGATTGATTGGTTCGGCGCTCCGG
CGCGGCGCGACACGACTTGGCAAACAACAGCTGCTGGGCAAGCGGGTGAA
GCTGGTGCGGGAGGTGGTGCGCGAGGTGGCGGGGTTGATGCCCTACGAGA
AGCGGATCCTCGACATGATCAAGGTCGGCGGCGGCAGCGCTGAGAAGCGC
ATGTACAAGTACGCCAAGAAGCGGGTGAGTTAGTTGCGCACGACGCCGCC
CGCCCGCCTCCGGTTTCTCTTTCTCTCTTTCGTCCTTTTATCTCTTTGCT
GGCTGAGAGTGCGTGGGAAGTCTTCTCCCGTCATATGCTTGAGGGAATGG
AGGTCTCGCGTTCTTTGTATTTCGCGTGTTTGTTTCCTCCCCTCCGTGCG
GAGGCGGTTGTTGTCGGTATGTTCAGCGTGTCGTCTTCCCTGCTGCTGTT
TGCACGTGAGTCCGGTTCTGTGTGTGCTCTGCTATGGTAGAACGACTTTC
CGAGGAGAGAAGATTTCGCTGTTTTTGTTTTGTTTTGTTTTTTCTACGTC
TCTCTTCTCCCCGTGCTGCGCCCCTTCCCTGATTCTGCAACGCCTTTGTT
TGCGTTGCCGCTCGCCTTTCCCTGTTTTTGTGTCCTTGCCGGTGTGCGCA
GCTCGGAACCCACAAGCGGGCGCTGAAGAAGCGCGAGGACATCAAGGCGT
ACTACAGCCGCATCCGCGCCCGGCAAGCCCTCGGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2077:241..1478+

>mRNA_P-wetherbeei_contig2077.1.1 ID=mRNA_P-wetherbeei_contig2077.1.1|Name=mRNA_P-wetherbeei_contig2077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig2077:241..1478+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTTCGCGCGCCGCTCTATTTTCTTGTTCGTTTCCGGAAACAAGCT
ACTTCGCGCGCTAGTATCTCGCCCTCGAAGATGCTGCCTCGTTATCAAAA
GAGACTGCGCTCACTTCCATCTTAGCATTTGGCATCGAACTAGCGTTGAC
TGCGCAGGCGGAACGTGCATCGGAGTACCAATTGTATCTACCTTTCTCAT
GACTCACTTTCCCGTCCATCTTGCCGACAACAAAAACCACGCTGGCTTCT
TGGGCTACCCTACCGCACCTGCGACACTTCCTTCGATTACCGACACCGCA
AAACCTCTGGGCGGTGGCGTCGATCGTTCCGCTGATCAACAATGGAACCG
GCGATTGATTGGTTCGGCGCTCCGGCGCGGCGCGACACGACTTGGCAAAC
AACAGCTGCTGGGCAAGCGGGTGAAGCTGGTGCGGGAGGTGGTGCGCGAG
GTGGCGGGGTTGATGCCCTACGAGAAGCGGATCCTCGACATGATCAAGGT
CGGCGGCGGCAGCGCTGAGAAGCGCATGTACAAGTACGCCAAGAAGCGGG
TGAGTTAG
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